BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472970
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27660.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2665 0.0
> AT1G27660.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:9621570-9626004 FORWARD LENGTH=1831
Length=1831
Score = 2665 bits (1443), Expect = 0.0
Identities = 1687/1800 (94%), Gaps = 36/1800 (2%)
Strand=Plus/Plus
Query 1 TCATCTTTCTTTacacacacacacacat--atacac----a-gatacagagatcagatat 53
||||||||||||||||||| |||||||| | |||| | ||||||||||||| |||
Sbjct 29 TCATCTTTCTTTACACACAAACACACATACACACACATATATAATACAGAGATCAGGTAT 88
Query 54 actacaaatacctatatatatatatCATCATCATATCTCTCATACGTACATGGACTCTGC 113
| | ||||| || |||||||||| |||||||| | ||||||||| || |||||||||||
Sbjct 89 A--ATAAATA-CT-TATATATATAGCATCATCA-A-CTCTCATACATATATGGACTCTGC 142
Query 114 TAATCTCCATCAGCTTCAAGATCAATTACAGCTTGTGGGGTCTTCTTCATCTTCTTCTTC 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 TAATCTCCATCAGCTTCAAGATCAATTACAGCTTGTGGGGTCTTCTTCATCTTCTTCTTC 202
Query 174 CTTAGATAATAACTCTGATCCTTCTTGCTATGGAGCTTCCTCTGCTCATCAATGGAGCCC 233
|||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 203 CTTAGACAATAACTCTGACCCTTCTTGCTATGGAGCTTCATCTGCCCATCAATGGAGCCC 262
Query 234 AGGAGGTATTTCTTTGAATAGTGTGAGCTTGAGTCATAACTATAACAATGAGATGTTAAA 293
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 263 AGGAGGTATTTCTTTGAATAGTGTGAGCTTGAGTCATAATTATAACAATGAGATGTTAAA 322
Query 294 CACAAGAG-----------ATC-ACAACAACAACACAAGTGAGTGTATGAGTCTCTCCAC 341
|||||||| | | ||||||||||||||||||| ||||||||||||||||
Sbjct 323 CACAAGAGCTCACAACAACAACAACAACAACAACACAAGTGAATGTATGAGTCTCTCCAG 382
Query 342 CATCCACAATCACTCCTTGATCCAACAGCAAGACTTTCCTTTACAATGGCCTCATGACCA 401
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 383 CATCCACAATCACTCCTTGATCCAACAACAAGACTTTCCTTTACAATGGCCTCATGACCA 442
Query 402 ATCTTCATATCATCATCATGAAGGACTTCTCAAGATCAAAGAAGAGCTTTCCTCATCAGC 461
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 443 ATCTTCATATCAACATCATGAAGGACTTCTCAAGATCAAAGAAGAGCTTTCCTCATCAAC 502
Query 462 TATCTCAGACCATCAAGAAGGCATATCCAAGTTCACAGACATGTTAAACAGTCCAGTGAT 521
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 503 TATCTCAGACCATCAAGAAGGCATATCCAAGTTCACAGACATGTTAAATAGTCCAGTGAT 562
Query 522 CACAAACTATTTGAAGATCAATGAACATAAGGACTACACAGAGAAGCTTCTTCTAAAGAG 581
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 563 AACAAACTATTTGAAGATCAATGAACATAAGGACTACACTGAGAAGCTTCTTCTCAAGAG 622
Query 582 TATGTCTTCTGGTTTCCCCATCAGTGGAGATTATTGTAGCAGCCTTCCCTCTTCTTCTTC 641
|||||||||||| ||||| |||| |||||| ||| |||||||||||||||||||||||||
Sbjct 623 TATGTCTTCTGGATTCCCGATCAATGGAGACTATGGTAGCAGCCTTCCCTCTTCTTCTTC 682
Query 642 TTCCTCTTCGCCTTCGTCTCAGTCTCATAGAGGCAATTTCAGTCAGATTTACCCAAGCGT 701
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 683 TTCCTCTTCACCTTCGTCTCAGTCGCATAGAGGCAACTTCAGTCAGATTTACCCAAGCGT 742
Query 702 AAACATATCGAGCTTGAGCGAGTCTCGGAAGATGAGCATGGACGACATGAGTAACATCCC 761
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 743 AAACATATCGAGTTTGAGCGAATCTCGGAAGATGAGCATGGACGACATGAGTAACATCTC 802
Query 762 AAGACCATTTGATATGAACATGCAGGTTTTTGATGGAAGATTGTTTGAAGGGAATGTCTT 821
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 803 AAGACCATTTGATATAAACATGCAGGTTTTTGATGGAAGATTGTTTGAAGGAAATGTATT 862
Query 822 AGTTCCTCCTTTGAATTCTCAAGAGATTAGCAATCTTGGGATGAGCAGAGGAAGCTTTCC 881
|||||||||||| || ||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 863 AGTTCCTCCTTTTAACGCTCAAGAGATTAGTAGTCTTGGGATGAGCAGAGGAAGCCTTCC 922
Query 882 TCCTTTTGGCCTCCCTTTTCATCATCATCTGCAGCAAACACTTCCCCACCCTTCTTCTTC 941
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 923 TTCTTTTGGCCTCCCTTTTCATCATCATCTGCAGCAAACACTTCCCCACCTTTCTTCTTC 982
Query 942 CCCTACTCATCAAATGGAAATGTTCAGCAATGAATCTCAAACAAGTGAAGGGAAGAGACA 1001
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 983 CCCTACTCATCAAATGGAAATGTTCAGCAATGAACCTCAAACAAGTGAAGGGAAGAGGCA 1042
Query 1002 TAACTTCTTGATGGCAACAAAGGCAGGCGAAAATGCTTCCAAGAAACCGCGCGTGGAATC 1061
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1043 TAACTTCTTGATGGCAACAAAAGCAGGAGAAAATGCTTCCAAGAAACCGCGCGTGGAATC 1102
Query 1062 ACGCTCCTCTTGCCCACCCTTCAAGGTGAGGAAAGAGAAGTTAGGAGACAGAATAGCAGC 1121
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1103 ACGCTCCTCTTGCCCACCCTTCAAGGTGAGGAAAGAAAAGTTAGGAGACAGAATAGCAGC 1162
Query 1122 TCTGCAGCAGTTGGTTTCACCCTTTGGAAAGACAGATACAGCATCTGTGTTAATGGAGGC 1181
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1163 TCTGCAGCAGTTGGTTTCACCCTTTGGGAAGACAGATACAGCATCTGTGTTAATGGAAGC 1222
Query 1182 AATTGGATACATCAAATTCCTACAGAGCCAGATTGAGACTTTAAGCGTCCCCTACATGAG 1241
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1223 AATTGGATACATCAAATTCCTACAGAGCCAGATCGAGACTTTAAGCGTCCCCTACATGAG 1282
Query 1242 AGCATCTAGGAACCGAACCGGAAAAGCCTCCCAGCTGGGCTCACAATCACAAGAAGGGGA 1301
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1283 AGCATCTAGGAACCGACCCGGAAAAGCCTCCCAGCTGGTCTCACAATCACAAGAAGGGGA 1342
Query 1302 TGAAGAAGAGACGAGGGATCTAAGAAGCCGTGGGCTGTGTCTAGTGCCGTTATCATGCAT 1361
||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1343 TGAGGAAGAGACGAGAGATCTTAGAAGCCGTGGGCTATGTCTAGTGCCGTTATCATGCAT 1402
Query 1362 GACTTATGTTACCGGAGATGGTGGGGACGGAGGAGGCGGTGTTGGTAGTGGGTTTTGGCC 1421
||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 1403 GACTTATGTTACCGGAGATGGTGGGGATGGAGGAGGCGGTGTTGGTACTGGTTTTTGGCC 1462
Query 1422 AACGCCACCTGGTTTTGGTGGCGGAACTTAGCCGTGGACTTAACAAACCGTAGGACTATG 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 AACGCCACCTGGTTTTGGTGGCGGAACTTAGCCGTGGACTTAACAAACCGTAGGACTATG 1522
Query 1482 CATGAGTACATTTATGGGATTTGGAGGTAGAGAA-AGGGAAGAAATATTGAAGGCGGAGT 1540
|||||||||||||| ||| |||||||||||||| | | ||||||| || |||| |||||
Sbjct 1523 -ATGAGTACATTTATCGGACTTGGAGGTAGAGAATAAG-AAGAAATGTTAAAGGTGGAGT 1580
Query 1541 ATTAGTTCTTTAATTTCTTT-G-TTTTGGTTTATTAATTGAA-TGTTTCGGTTTTGATAG 1597
|||||||||||||| ||||| | ||||||||||||||||||| | |||||||||||||||
Sbjct 1581 ATTAGTTCTTTAATCTCTTTTGGTTTTGGTTTATTAATTGAAAT-TTTCGGTTTTGATAG 1639
Query 1598 TGGAGCAAAGTTGGTCGTCCTGATTAGAAAGAAGAATTACAGGATAGACCAGCTTTGATC 1657
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1640 TGGAGCAAAGTTGGTCGTCCTGATTAGAAAGAAGTGTTACAGGATAGACCAGCTTTGATC 1699
Query 1658 CATTTATGATTAGTAATGAGTGAGACTTGACGATATGTTTCTACTTACATGAAGGGCCGT 1717
|||||| |||||||| | |||||||||||||||||||||||||||||||| |||| ||
Sbjct 1700 CATTTAAGATTAGTA--G--TGAGACTTGACGATATGTTTCTACTTACATGATGGGCTGT 1755
Query 1718 GGGAGCTAAATAAAATATCAAATAGCTTTGTATTATTTTGTTAAATCTCTTTTGTAGATA 1777
||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1756 GGGGGCTACATAAAATATCAAATAGCTTTGGATTATTTTGTTAAATCTCTTTTGTAGATA 1815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87901154295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5