BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472972
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27680.1 | Symbols: APL2 | ADPGLC-PPase large subunit | chr1... 2765 0.0
> AT1G27680.1 | Symbols: APL2 | ADPGLC-PPase large subunit | chr1:9631285-9634597
FORWARD LENGTH=2049
Length=2049
Score = 2765 bits (1497), Expect = 0.0
Identities = 1664/1743 (95%), Gaps = 17/1743 (1%)
Strand=Plus/Plus
Query 195 TATCTTTTTAGAATCTGATCTACCTCTTCTACTTCATTCCCCTTGTGTCTTTTTTAA-AA 253
|||||||||||||||||||||| ||||||||||||||| |||||| | |||||||| ||
Sbjct 257 TATCTTTTTAGAATCTGATCTATCTCTTCTACTTCATTTCCCTTGCAT-TTTTTTAATAA 315
Query 254 GTTGTAGAATCTGTGTCTTGTTCT-GAAAAATATGAAGGCTTGCTGTCCAATCATG-AGT 311
||||||||||| ||||||||||| |||||||||| || |||||| ||| |||| ||
Sbjct 316 GTTGTAGAATC--TGTCTTGTTCTGGAAAAATATGGAGTCTTGCTTTCCTGCCATGAAG- 372
Query 312 CAGTGTA-C-GAGTCCCTTTGGTCTCAACAACGAAATTGTCTCTGAGAGAGTTAGTGCCT 369
| || | | | || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 373 C--TGAATCAGTGTACCTTTGGTCTCAACAACGAAATTGTCTCTGAGAGAGTTAGTGCGT 430
Query 370 TCTGGGGAACCCAAGTTGTCAAGGCCAATAATCTGACGAC-ACAGAAAATTAGGAGTGCA 428
||||||||||||||||||||||| ||||| || ||| ||| || |||| |||||||||||
Sbjct 431 TCTGGGGAACCCAAGTTGTCAAGCCCAATCATTTGAGGACAAC-GAAACTTAGGAGTGCA 489
Query 429 CCTCAGAAGAAGATTCAGACGAACCTCATTCGCTCCGTTCTTACTCCATTTGTTGATCAA 488
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 490 CCTCAGAAGAAGATTCAGACAAACCTCATTCGCTCCGTTCTTACTCCATTTGTTGATCAA 549
Query 489 GACTCTCATGAACCTCTGCTGCGAACTCAAAATGCAGACCCAAAGAATGTAGCGTCTATC 548
|| ||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct 550 GAGTCTCATGAACCTCTGTTGAGAACTCAAAATGCAGACCCTAAGAATGTAGCGTCTATC 609
Query 549 ATACTAGGTGGCGGTGCTGGGACTCGCCTGTTCCCTCTTACAAGCAAGAGAGCTAAACCT 608
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 610 ATACTAGGTGGTGGTGCTGGGACTCGCTTGTTCCCTCTTACAAGCAAGAGAGCTAAACCT 669
Query 609 GCGGTGCCAATTGGAGGGTGTTACAGGCTGATAGATATACCGATGAGCAATTGCATCAAC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GCGGTGCCAATTGGAGGGTGTTACAGGCTGATAGATATACCGATGAGCAATTGCATCAAC 729
Query 669 AGTGGTATTAGAAAGATCTTCATCTTAACTCAGTTCAACTCCTTTTCTCTCAATCGCCAC 728
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 730 AGTGGTATTAGAAAGATCTTCATCTTAACTCAGTTCAACTCATTTTCTCTCAATCGCCAC 789
Query 729 CTT-TCTTGTACTTACAACTTCGGGAATGGAGTCAACTTTGGTGATGGGTTTGTTGAGGT 787
|| ||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 790 -TTGTCTCGTACTTACAACTTTGGCAATGGAGTCAATTTTGGTGATGGGTTTGTTGAGGT 848
Query 788 TCTTGCTGCAACCCAAACTTCCGGAGATGCAGGAAAGAAATGGTTTCAGGGAACTGCTGA 847
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 CCTTGCTGCAACCCAAACTTCCGGAGATGCAGGAAAGAAATGGTTTCAGGGAACTGCTGA 908
Query 848 TGCCGTCAGGCAATTTATATGGGTCTTTGAGGATGCTAAGACAAAGAATGTGGAACATGT 907
||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 909 TGCTGTTAGGCAGTTTATATGGGTCTTTGAGGATGCCAAGACAAAGAATGTGGAACATGT 968
Query 908 CTTGATCTTGTCTGGGGATCATCTCTATCGGATGGATTACATGAACTTTGTGCAGAAGCA 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 CTTGATCTTGTCTGGGGATCATCTCTATCGGATGGATTACATGAACTTTGTGCAGAAGCA 1028
Query 968 CATTGAGTCAAATGCTGATATCACAGTTTCTTGTCTTCCCATGGATGAGAGCCGTGCTTC 1027
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 CATTGAGTCCAATGCTGATATCACAGTTTCTTGTCTTCCCATGGATGAGAGCCGTGCTTC 1088
Query 1028 GGATTTTGGGCTGCTTAAAATTGACCAGTCTGGAAAAATCATTCAATTCTCGGAAAAACC 1087
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1089 GGACTTTGGGCTGCTTAAAATTGACCAGTCTGGTAAAATCATTCAATTCTCGGAAAAACC 1148
Query 1088 AAAGGGAGATGACTTAAAGGCAATGCAAGTTGACACTTCCATTCTTGGGTTACCAACGAA 1147
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1149 AAAGGGAGATGACTTAAAGGCAATGCAAGTTGACACTTCCATTCTTGGTTTACCACCGAA 1208
Query 1148 AGAAGCTGCGGAGTCCCCATACATTGCATCGATGGGTGTTTACGTATTTAGAAAAGAGGT 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 AGAAGCTGCGGAGTCCCCATACATTGCATCGATGGGTGTTTACGTATTTAGAAAAGAGGT 1268
Query 1208 TTTGTTAAAGCTTCTAAGGTCAAGTTATCCTACATCCAATGACTTTGGTTCTGAAATTAT 1267
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 TTTGCTAAAGCTTCTAAGGTCAAGTTATCCTACATCCAATGACTTTGGTTCTGAAATTAT 1328
Query 1268 CCCGTTGGCCGTAAGGGAGCATAATGTTCAGGCATTTTTGTTCAATGACTATTGGGAGGA 1327
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 CCCGTTGGCCGTAGGGGAGCATAATGTTCAGGCATTTTTGTTCAATGACTATTGGGAGGA 1388
Query 1328 TATTGGAACCATAGGATCATTCTTTGATGCCAATTTAGCCCTCACAGAACAGCCTCCTAA 1387
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1389 TATTGGAACCATAGGATCATTCTTTGATGCCAATTTAGCCCTCACGGAACAGCCTCCTAA 1448
Query 1388 ATTCCAATTCTACGATCCAAAAACACCCTTCTTCACTTCTCCAAGATTCCTGCCACCTAC 1447
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1449 ATTCCAATTCTACGATCAAAAAACACCCTTCTTCACTTCTCCAAGATTCTTGCCACCTAC 1508
Query 1448 CAAAGTTGATAAATGCAGGATACTTGATTCCATAGTTTCACATGGATGCTTCTTGAGAGA 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 CAAAGTTGATAAATGCAGGATACTTGATTCCATAGTTTCACATGGATGCTTCTTGAGAGA 1568
Query 1508 ATGCAGTGTGCAGCACTCTATCGTTGGCATACGATCACGTATAGAGTCTGGAGTAGAGCT 1567
|||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 1569 ATGCAGTGTGCAGCACTCAATCGTTGGCATACGATCACGTCTCGAGTCTGGAGTAGAGCT 1628
Query 1568 TCAGGATACGATGATGATGGGAGCTGATTTCTACCAGACAGAAGCTGAAATCGCGTCTCT 1627
||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1629 TCAGGATACAATGATGATGGGAGCTGATTTCTACCAAACGGAAGCTGAGATCGCGTCTCT 1688
Query 1628 TTTGGCGGAAGGGAAAGTTCCGGTAGGGGTCGGCCAGAACACCAAAATCAGGAACTGTAT 1687
|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 1689 TTTGGCGGAAGGGAAAGTTCCGGTAGGGGTTGGCCAGAACACAAAAATCAAGAACTGTAT 1748
Query 1688 CATTGACAAGAACGCCAAGATCGGGAAGAACGTGATCATAGCGAATGCAGATGGCGTGGA 1747
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1749 CATTGACAAGAACGCCAAGATCGGGAAGAACGTGGTCATAGCGAATGCAGATGGCGTGGA 1808
Query 1748 AGAAGGAGATAGGCCAGAGGAAGGGTTTCACATAAGATCAGGGATCACCGTTGTGCTGAA 1807
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1809 AGAAGGCGATAGACCAGAGGAAGGGTTTCACATAAGATCAGGCATCACCGTTGTGCTGAA 1868
Query 1808 GAACGCCACCATTAGAGATGGTCTGCATATTTA-GCTTTTAAACCTCTCTT-AGGAGCAG 1865
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1869 GAACGCCACCATTAGAGATGGTCTGCATATTTAAGCTTTTAAACCTCTCTTTAGGAGCAG 1928
Query 1866 TGTATGTCGCTTCTTGTGATTTTGTAACGAGACTAGGTACGTTCGATTAATAATTTAATA 1925
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1929 TGTATGTGGCTTCTTGTGATTTTGTAACGAGACTAGTTACGTTCGATTAATAATTTAATA 1988
Query 1926 AAA 1928
|||
Sbjct 1989 AAA 1991
Score = 230 bits (124), Expect = 5e-59
Identities = 186/213 (87%), Gaps = 16/213 (8%)
Strand=Plus/Plus
Query 1 ATCACGAGGATCATCACATTAAACTCTGTTTTGTTGAtctctctctctctTCCGTTTCTC 60
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1 ATCACGAGGATCATCACATTAAACTCTGTTTTGTTGATCTCTCTTTCTGTTCCGTTTCTC 60
Query 61 TTTCCACTGCGAAAAGTTAAAGCTCACTCCCTCACTCACTC------TCATTTCTCACCA 114
|||||||||| |||||||||||||| ||| |||||||| || ||||||||||| |
Sbjct 61 TTTCCACTGCCAAAAGTTAAAGCTCTCTCTCTCACTCAATCACACACTCATTTCTCACTA 120
Query 115 CTTGACAACTTCCTTGTGGACAAAATTAGTCGACTTCTC----C-----AACTCTGTTTC 165
|| ||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 121 TTTCACAACTTCCTTGTGGACAAAATTAGTCGACTTCTCTGTTCTCTCCAACACTGTTTC 180
Query 166 GTTTTCACTCCCCAAAAT-CGAATCTGGGTTAT 197
||||||||| |||||||| ||||||||||||||
Sbjct 181 GTTTTCACTACCCAAAATTCGAATCTGGGTTAT 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97087854030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5