BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472973
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27690.1 | Symbols: | Protein of unknown function (DUF620) ... 2473 0.0
> AT1G27690.1 | Symbols: | Protein of unknown function (DUF620)
| chr1:9636594-9638577 FORWARD LENGTH=1659
Length=1659
Score = 2473 bits (1339), Expect = 0.0
Identities = 1488/1560 (95%), Gaps = 10/1560 (1%)
Strand=Plus/Plus
Query 1 CACCAAACCTTCATCTTCTCTCT--CAC-ACTAACAACA----CTTCTTCTTCTTCCGAC 53
|||||||||| | |||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 27 CACCAAACCTGCGTCTTCTCTCTCACACTACTAACAACACTTCCTTCTTCTTCTTCCGAC 86
Query 54 TATGGATAAGAAGCACGGCTTGTTCTCCAAGTCTAATTCCCGGCGATCACGATCCAAGAG 113
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 87 TATGGATAAGAAGCACGGCTTGTTCTCCAAGTCTAATTCCCGGCGACCACGATCCAAGAG 146
Query 114 TCCTGTCCGAAGCGTCTCTCCGATCATCATCCGTCGCCGCAAAGGTCGTTACGTCTCCCA 173
||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||| | ||
Sbjct 147 TCCAGTCAGAAGCGTCTCTCCGATCATCATCCGTCGCCGGAAAGGCCGTTACGTCACACA 206
Query 174 ACCGGACCGGCACATGTCTGAGATGCTTGCTCCGGTTAGAGAAGGTCCTGATCCAGACGG 233
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 207 ACCGGACCGGCACATGTCTGAGATGCTTGCTCCGGTTATAGAAGGTCCTGATCCAGACGC 266
Query 234 TGAAGACTCCGGAAGTAGTGGTGATTACTCTAGGTTCGAGAGACGCTGGTACAATTGGAT 293
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 267 TGAAGACTCCGGAAGCAGTGGTGATTACTCTAGGTTCGAGAGACGTTGGTACAATTGGAT 326
Query 294 GAAATGTCAGCTTCCGGTGGCTCCGCCGTCAGTATCGTCGTCTTCGGATTTCAAACGAAC 353
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 327 GAAATGTCAGCTTCCGGTGGCTCCGCCGTCAGTATCGTCCTCTTCGGATTTCAAACGAAC 386
Query 354 GGATCTGAGGCTTTTGCTCGGTGTTCTTGGCGCACCTTTAGGTCCTGTGCACGTTAGTGC 413
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 387 GGATCTGAGGCTTCTCCTCGGTGTTCTTGGCGCACCTTTAGGTCCTGTGCACGTTAGCGC 446
Query 414 TCTGGATCTCCTTCCACACCTCAGTATTAAAAATACACCTATGGAGACCTCCTCTGCTCA 473
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 447 TCTGGATCTCCTTCCACACCTCAGTATCAAGAATACACCTATGGAGACTTCCTCTGCTCA 506
Query 474 GTACATACTTCAGCAGTATACGGCTGCATCAGGTGGTCAAAAGCTTCATAGTTCTGTGCA 533
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 507 GTACATACTTCAGCAGTATACGGCTGCATCAGGAGGTCAAAAGCTTCATAGTTCTGTGCA 566
Query 534 AAATGGTTATGTTATGGGAAGAATCAGGACGATGGCCTCGGAGTTTGAGACAGGCTCAAA 593
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 567 AAATGGATATGTTATGGGAAGAATCAGGACGATGGCTTCAGAGTTTGAGACAGGCTCAAA 626
Query 594 AGGTTCAAAGAGCAAGAATAATTCGTCAAAATCTGTCGAGTCTGGAGGATTTGTGTTGTG 653
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 627 AGGTTCAAAGAGCAAGAATAATTCGTCAAAAGCTGTTGAGTCTGGAGGATTTGTGTTGTG 686
Query 654 GCATATGAATCCTGACATGTGGTACATGGAGCTTGTTCTTGGTGGGAGCAAGGTTCTTGC 713
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GCATATGAATCCTGATATGTGGTACATGGAGCTTGTTCTTGGTGGGAGCAAGGTTCTTGC 746
Query 714 GGGTTGTGACGGAAAGCTTGTGTGGAGGCACACACCATGGCTTGGGCCTCATGCTGCAAA 773
||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 747 AGGTTGTGACGGGAAGCTTGTGTGGAGACACACACCATGGCTTGGACCTCATGCTGCAAA 806
Query 774 AGGACCGGTTAGACCATTACGGCGTGCTCTTCAGGGCCTTGACCCGAGAACCACAGCGTA 833
||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||
Sbjct 807 AGGACCGGTTAGACCATTACGACGTGCTCTGCAGGGACTTGACCCGAGGACCACAGCGTA 866
Query 834 TATGTTTGCAAATGCAAGATGCATAGGAGaaaaaaaGATTGATGGAGAGGACTGTTTCAT 893
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 867 TATGTTTGCAAATGCAAGGTGCATAGGAGAAAAAAAGATCGATGGAGAAGACTGTTTCAT 926
Query 894 TCTCAAGCTATGCGCAGACCCAGCAACACTCAAAGCTAGAAGCGAAGGGGCATCAGAGAC 953
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 927 TCTCAAGCTATGTGCAGACCCGGCAACACTCAAAGCTAGAAGCGAAGGGGCATCAGAGAC 986
Query 954 CATAAGGCATACTTTGTTTGGTTACTTCAGCCAAAAAACCGGTCTTCTTGTTCACTTAGA 1013
|||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 987 CATAAGACATACGTTGTTCGGTTACTTCAGCCAAAAAACCGGTCTGCTTGTTCACTTAGA 1046
Query 1014 AGACTCCCAGCTAACCCGAATCCAAAACAATGGAGGTGAAGCGGTTTACTGGGAGACAAC 1073
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1047 AGACTCCCAGCTAACCCGAATCCAAAACAATGGAGGCGAAGCGGTTTACTGGGAGACGAC 1106
Query 1074 CATCAATTCATACCTAGAAGACTACAAACCCGTCGAAGGCATCATGATAGCTCACTCTGG 1133
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1107 CATCAACTCATACCTAGAAGACTACAAACCTGTCGAAGGTATCATGATAGCTCACTCTGG 1166
Query 1134 TAGATCCGTGGCTACGCTTTTAAGGTTTGGAGATATGTCATCAGGACATAACACTAAGAC 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 TAGATCCGTGGCTACGCTTTTAAGGTTTGGAGATATGTCATCAGGACATAACACTAAGAC 1226
Query 1194 CACAATGCAAGAAGCATGGGTCATCGATGAAATCGCGTTCAATGTCCCTGGCTTGTCTAT 1253
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1227 CACAATGCAAGAAGCATGGGTCATCGATGAAATCTCGTTCAATGTCCCTGGCTTGTCTAT 1286
Query 1254 AGATTGCTTCATTCCACCTTCTGAACTCAGATTTGATTCCCACGTTGAAGACTTATCTCA 1313
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1287 AGATTGCTTCATTCCACCTTCAGAACTCAGATTTGATTCCCACGTTGAAGACTTATCTCA 1346
Query 1314 AGGCCCCAAAATTAGGACATTGCACGGCCATAAAAATGGTTGATGTGAAGAAGCAGGAGA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 AGGCCCCAAAATTAGGACATTGCACGGCCATAAAAATGGTTGATGTGAAGAAGCAGGAGA 1406
Query 1374 TCAATGTGTATAACTCATTCAAAAACAAATCCTAGATCGTTTAATTCTACATTTGCTATC 1433
||||||||||||||||||||||||||||| |||||| || ||| || ||| ||||||||
Sbjct 1407 TCAATGTGTATAACTCATTCAAAAACAAACCCTAGACCGGTTATTT-TACTTTTGCTATT 1465
Query 1434 GTCTAAGCTAAAATTCTTGTAGGGAGTTTCGTTGAAGATGTAAATAGACAGCAGGAGAAT 1493
||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1466 GTCGAAGCTAAAATTCTTGTAGGAAGTTTCGTTGAAGTTGTAAATAGACAGCAGGAGAAG 1525
Query 1494 TTAGTTCTTTTTGCCGCATAATGTTAGGAATGTGTATAGTCTTAGTAAGGTCAGTCCAAT 1553
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1526 TTCGTTCTTTTTGCCGCATAATGTTAGGAATGTGTA--GTCTTAGTAAGGTCAGTCCAAT 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76656232215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5