BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472974

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27695.1 | Symbols:  | glycine-rich protein | chr1:9639024-9...   621    2e-177


> AT1G27695.1 | Symbols:  | glycine-rich protein | chr1:9639024-9640151 
FORWARD LENGTH=530
Length=530

 Score =  621 bits (336),  Expect = 2e-177
 Identities = 391/417 (94%), Gaps = 5/417 (1%)
 Strand=Plus/Plus

Query  22   TAGAGAGAGCAATCTACCAGATTCACCGATTACCACCAACAAACAAGATCATTATGGTGC  81
            ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct  53   TAGAGAGAGCAATCTACCAGATTCACCGATTACCAACAACAAACAAGATCACTATGGTGC  112

Query  82   TCTCTGACTTCACTGGAGTCGGTGTTGGATTTGGATTCGGTGTTGGTTGTGGATTTGGCG  141
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  113  TCTCTGACTTCACTGGAGTCGGTGTTGGATTTGGGTTCGGTGTTGGTTGTGGATTTGGCG  172

Query  142  TTGGATGGGGTTTTGGAGGAATGCCTTTGAACATTTTAGGTGTTGGAGCAGGTGGCGGTT  201
            |||||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||
Sbjct  173  TTGGATGGGGTTTTGGAGGAATGCCTATGAACATCTTAGGTGTTGGTGCTGGTGGCGGTT  232

Query  202  GCGGTGTGGGTTTGGGCCTCGGGTGGGGTTTCGGGACTGCCTTTGGGAGTCACTACCGTT  261
            |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  233  GCGGGGTGGGTTTGGGCCTCGGGTGGGGTTTCGGGACTGCGTTTGGGAGTCACTATCGTT  292

Query  262  CATCTAGACTTACTTTTCAAGGCATCGAGTTAGAGACTACCGATAAACGGGAGGAGAAGG  321
            ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  ||
Sbjct  293  CATCTAGACTTACATTTCAAGGCATCGAGTTAGAGACTGCCGATAAACGGGAGGAGGTGG  352

Query  322  TGGCTAACATGTCCTAAAACACCACTTAAGCAGCCGTG--CTTCAATACTCTGCTAGGAT  379
            |||||||||||||| ||||| |||||||||||| ||||  ||||||||||||||| ||||
Sbjct  353  TGGCTAACATGTCCAAAAACTCCACTTAAGCAGTCGTGTGCTTCAATACTCTGCTCGGAT  412

Query  380  TGATTGTAAACA-AAGTCTGACATCTTTTCTTATATTCTCAATGAAACGATTACTTC  435
            |||||||||| | || ||||||| |||||||||| |||||||||||||| |||||||
Sbjct  413  TGATTGTAAA-AGAATTCTGACACCTTTTCTTAT-TTCTCAATGAAACGGTTACTTC  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5