BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472976
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27700.1 | Symbols: | Syntaxin/t-SNARE family protein | chr... 1724 0.0
> AT1G27700.1 | Symbols: | Syntaxin/t-SNARE family protein | chr1:9640198-9641901
REVERSE LENGTH=1239
Length=1239
Score = 1724 bits (933), Expect = 0.0
Identities = 1029/1075 (96%), Gaps = 8/1075 (1%)
Strand=Plus/Plus
Query 83 ATCTGCTCAAGTGATGACGACGAGTTTGGATCGGTGGGAGAAAGATCCTTTCTTTCCCGC 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 ATCTGCTCAAGTGATGACGACGAGTTTGGATCGGTGGGAGAAAGATCCTTTCTTTCCCGC 196
Query 143 TGCTGAAGAAGTTCAGGAATCTGCCGACAGGATGGAGTCAGCGTACAGGACATGGATCAA 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 197 TGCTGAAGAAGTTCAGGAATCTGCCGACAGGATGGAGTCAGCGTACAGGACATGGCTCAA 256
Query 203 TGGGAAACGAGACTCTTCAAATGTATGGGACTCTGATCAGCTTCACAGAGATCTTCACGC 262
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 257 TGGGAAACGAGACTCTTCAAAAGTATGGGACTCTGAGCAGCTTCATAGAGATCTTCACGC 316
Query 263 AGCTCTTGGAACCACCAAATGGCAGTTAGATGAATTCCAAAAAGCTGTCAAATCTAGCTA 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 AGCTCTTGGAACCACCAAATGGCAGTTAGATGAATTCCAAAAAGCTGTCAAATCTAGCTA 376
Query 323 TGACAATCGTTTGAGTGGTGAAACTAGAGATAGGCATCGTGAGTTTACTTTCGCAATGGA 382
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 377 TGACAATCGTTTGAGTGATGAAACTAGAGATAGGCATCGTGAGTTTACTTTCGTAATGGA 436
Query 383 AGCTCAGGTGTCGAAAATCGA-AAAGTCTCTCAAGGAAGCGGCGCAATCTGATGGCAAAG 441
|||||| |||||||||||||| ||| |||||||||||||| |||||||| ||||| ||||
Sbjct 437 AGCTCAAGTGTCGAAAATCGAGAAA-TCTCTCAAGGAAGCTGCGCAATCCGATGGGAAAG 495
Query 442 GAACTCCGAGATGGGTCCGTTTGGATGAAGATGATCGTAATGAGCTTGCCCTTTTCTTGA 501
|||| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 496 GAACACCGAGATGGGTTCGTTTGGATGAAGATGATCGTAATGAGCTTGCTCTCTTCTTGA 555
Query 502 CTGGACCATCTGAATCTG-TCAAAGTAAATCCGAATGGACATAGAAGGACGGCAAGTGCT 560
|||| ||||||||||||| | |||| |||||| ||||||||||||||||| |||||||||
Sbjct 556 CTGGTCCATCTGAATCTGCT-AAAGCAAATCCTAATGGACATAGAAGGACTGCAAGTGCT 614
Query 561 GCTGAATTCAGTGCTTGGAACATTGCGGTTTCTGATGATGGTTTAGTGAAGAAATCTTCT 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 615 GCTGAATTCAGTGCTTGGAACATTGCGGTTTCTGATGATGGTTTAGTGAAGAAATCTTGT 674
Query 621 GATGAGCCAGTGGTTCGACCTCCGAGGAAAGTACCTAGCTTCTCTGGGTTCTTAAATTAT 680
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 675 GATGAGCCAGTGGTTCGACCTCCGAGGAAAGTACCTAGCTTCTCTGGATTCTTGAATTAT 734
Query 681 ATGGATCCTGGGTCCAACCATTGCAATAGAAAGTGGAAGGCTTTAGATCGTCAAGGAGAC 740
|||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 735 ATGGATCCTGTGTCCAAGCATTGCAATAGAAAGTGGAAGGGTTTAGATCGTCAAGGAGAC 794
Query 741 TCCGATGCTGCCTTATTACCTATCCAAGCTAACCAACAAGTTATGAATGGAAGT-CTAGA 799
|| |||||||| |||||||||||||||||||||||||||| |||||||||| || | |||
Sbjct 795 TCTGATGCTGCTTTATTACCTATCCAAGCTAACCAACAAGATATGAATGGATGTTC-AGA 853
Query 800 GAAGGGCAAGAGTTGTATGGAGTGTGAGGAGGACTGTTATGAAAAGCAGCTTCACGGTTG 859
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 854 GAGGGGCAAGAGTTGTATGGAGTGTGAGGAGGACTGTTATGAAAAGCAGCTTCATGGTTG 913
Query 860 GTATGGAGCTCTACAGAGGCAACTTCAACGGTCTCAGTATCGAATGCGATATAGTAAATC 919
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 914 GTATGGAGCTCTACAGAGGCAACTCCAACGGTCTCAGTATCGAATGCGATATAGTAAATC 973
Query 920 GGTTCACGCTGCAATTTGGATTATTCTTTTAGTTTTTCTTATTGTGGTAGTCGCAGTGCA 979
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 974 GGTTCACGCTGCAATTTGGATTATTCTTTTAGTTTTTCTTATTGTGGTAGTTGCAGTGCA 1033
Query 980 TTCAATGTAGAAGACAGGTTTGGAATAGCAGGGTTCGAGTTCATTCATCTTATGTGTAAC 1039
|||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1034 TTCAATGTAGAAGAGAGGTTTGGAATAGCAAGGTTCGAGTTCATTCATCTTCTGTGTAAC 1093
Query 1040 GGCGAAAGAGACGAATTTGGGAATCCACATTTTTACTGTACAGTAAATTCCA-CTGTTTT 1098
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1094 AGCGAAAGAGACGAATTTGGCAATCCACATTTTTACTGTACAGTAAATTCCAACTGTTTT 1153
Query 1099 TTGTTGTTTGTAATATAGAAATGCATTTTTT-GGTTCGATTATTTGAAACGGGTT 1152
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1154 TGGTTGTTTGTAATATAGAAATGCATTTTTTTGGTTCGATTATTTGAAACGGGTT 1208
Score = 87.9 bits (47), Expect = 2e-16
Identities = 82/96 (85%), Gaps = 13/96 (14%)
Strand=Plus/Plus
Query 1 GAACGTTCCCTCTCTTCTCTGAAATCTTTCTCG--------A-----TCCATTTTCCTCC 47
||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 22 GAACGTTCCCTCTCTTCTCTGAAATCTTTCTCGATCCATCCATCTTCTCCATTTTCCTCC 81
Query 48 ATTTCTGGGTTTCTTCTCGTCTTCCAAGGATTAGGA 83
|||||||||||||||||| |||||||||||||||||
Sbjct 82 ATTTCTGGGTTTCTTCTCATCTTCCAAGGATTAGGA 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5