BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472977
Length=2145
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27720.1 | Symbols: TAF4, TAF4B | TBP-associated factor 4B |... 2909 0.0
> AT1G27720.1 | Symbols: TAF4, TAF4B | TBP-associated factor 4B
| chr1:9643351-9647376 REVERSE LENGTH=2163
Length=2163
Score = 2909 bits (1575), Expect = 0.0
Identities = 1992/2185 (91%), Gaps = 62/2185 (3%)
Strand=Plus/Plus
Query 1 ATGGATCTCTCCATTGTCAAGCTCCTCGAAGAAGACGATGAGGTTGACTCTAAGCATTCG 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGATCTCTCCATTGTCAAGCTCCTCGAAGAAGACGAAGAGGTTGACTCTAAGCATTCG 60
Query 61 GAATATGACTTG-AAAGTGTTTCAGGACGCTCTGATTCGAGATATT----GAAG-----T 110
||| |||||||| ||| ||||||||||| ||||||||||||||||| |||| |
Sbjct 61 GAAGATGACTTGCAAA-TGTTTCAGGACTCTCTGATTCGAGATATTGAAGGAAGTAACTT 119
Query 111 GGTGTCTATAAACAATCCTATTGGTGATGAATCAGAAAGGCCGCAACCTCAGTATATGAA 170
| ||||||||||||| ||| |||| |||||||||||| |||||||||| |||||||||
Sbjct 120 GAAGTCTATAAACAATACTACTGGTAATGAATCAGAAAAACCGCAACCTCGGTATATGAA 179
Query 171 ACTGCAGAAGATGAGTAGCCAACAGGCTCATGGGGTGGAACAGACTGTTGACCCCGTGAA 230
||||||||||||||||||| || || ||| | |||||||| ||||||||||||| |||||
Sbjct 180 ACTGCAGAAGATGAGTAGCAAAGAGACTCCTTGGGTGGAAAAGACTGTTGACCCTGTGAA 239
Query 231 TCATGGTGTTACAGTAGCACGAGTGT-GTGATTTGCTTCGTATCTTGGAAGACCACCACC 289
|||| | ||| | |||||||||| | |||||||||||||| | ||| || ||||||
Sbjct 240 TCATAATCTTAGATTAGCACGAGT-TACTGATTTGCTTCGTACCGTGGTAG---ACCACC 295
Query 290 AACCCGACAAAGTTATACAGATGCGTTGTCTTACCCTGTATTATAAAGTCAAGAGAAAAG 349
|||||| | || | | ||| || |||||||| |||| |||||||| ||||||||||||
Sbjct 296 AACCCGGC-AA---A-A-AGACGCATTGTCTTAACCTGCATTATAAACTCAAGAGAAAAG 349
Query 350 AACTTTCAATACAAGAGTTCATGCAACAACTGAAAGATGTCGTAGGTGATCGGATAACCA 409
||||| |||| |||||||||||| |||||||| |||| | |||||||||| ||||| ||
Sbjct 350 AACTTACAATGGAAGAGTTCATGCGACAACTGAGAGATCTTGTAGGTGATCAGATAATCA 409
Query 410 GATCGCTAATTAGCCAACTGCATCAGTCAAAACAGGGAAATATGGGGATCAAAGTACCCG 469
||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||| |
Sbjct 410 GATCGGTAATTAGCCAACTGCCTCAGTTAAAACCGGGAAATATGGGGATCAAAGTACCTG 469
Query 470 GACGCCCAAACCATGACAAAGTGTCTAAATCTGCTGAAATAATTGCTCAAGAATCTGACC 529
||||| |||||||||||||||||||||||||||||||| | | ||||||||||||||| |
Sbjct 470 GACGCTCAAACCATGACAAAGTGTCTAAATCTGCTGAATTCACTGCTCAAGAATCTGATC 529
Query 530 CTTGTGAAGTTCATATTAACCAACTGCCTTCTACAAATTCAGGCACCTTAAGCAGTTCAG 589
|| ||||||||||| ||||||||||| ||||||||| |||||||||||||| |||||||
Sbjct 530 CTCGTGAAGTTCATGTTAACCAACTGTCTTCTACAACTTCAGGCACCTTAAACAGTTCAA 589
Query 590 CTACTGCGCAGGGATTAAATAAGCATCCCGAG-ATACACATGCAGCTTCCATCAAGTTCT 648
|||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 590 CTACTGTGCAGGGATTAAATAAGCATCCCGAGCA-ACACATGCAGCTTCCATCAAGTTCT 648
Query 649 TTTCATATGTATACCAACTCTGGAAGTCTGAATCCATACCCAGGGACAAATGTCACTTCT 708
||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 649 TTTCATATGGATACCAAATCTGGAAGTCTTAATCCATACCCAGGGACAAATGTCACTTCT 708
Query 709 CCTGGTTCATCATCGAGAGCAAAGCTTCCTGATTTCCAGCACATGGAAAACAATCAGAAT 768
|||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 709 CCTGGTTCATCATCGAGAGCAAAGCTCCCTGATTTCCAGCATAGGGAAAACAATCAGAAT 768
Query 769 GCGGGACCAGCCAGTGTTGGAGGACCGACCAAGTCTACAGTAAACATGACGACAGTA--- 825
| |||| |||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 769 GTGGGAATAGCCAGTGTTGGAGGACCAACCAAGTCTACAATAAACATGACGACAGTACCC 828
Query 826 AA-T--G-GT--CCAA-----GTA---GG-----GT----T-CAGGATGGTCCTATATCT 861
|| | | | |||| ||| || || | |||||||||||||||||
Sbjct 829 AAGTTTGAGAGGCCAACTTTTGTAAATGGTCCAAGTAGGGTTCAGGATGGTCCTATATCC 888
Query 862 GACTTCCAAAAGAACTCATCCTTGCCTCTATACTCTGCTCCTTGGCGAGGATCAGTCACC 921
||||||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 889 GACTTCCCAAAGAACTCATCCTTTCCTCTATATTCTGCTCCTTGGCAAGGATCAGTCACC 948
Query 922 AAGGACCATACAGTGGGCCCTTCTTCATCAGTGATCCATGTGGAGCATAAATTGATTGAT 981
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AAGGACCATACAGTGGGACCTTCTTCATCAGTGATCCATGTGGAGCATAAATTGATTGAT 1008
Query 982 CAAATTTTTGAACAGGCACAGAAGCCTCGTTCTTTGGTGCAGCATGGCGTGACTAATGTT 1041
|||| ||||||||||||||| || ||||||| |||||||||||| |||||||||||||||
Sbjct 1009 CAAAGTTTTGAACAGGCACATAAACCTCGTTATTTGGTGCAGCAAGGCGTGACTAATGTT 1068
Query 1042 CCACTGAAACAGAACAACGCTATTTTAATTAGTTCAAATGATGACTTGGAGAAGCAGTCT 1101
|||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1069 CCACTGAAACAGAAGAATGCTATTCCAATTAGTTCAAATGATGACTTGGAGAAGCAGTCT 1128
Query 1102 TCTAAAATGGGTTTATTCAAATCAACCACCTT-TGCCAGCTCTGTTTCTCCTTCAATGAC 1160
||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||
Sbjct 1129 TCTAAAATGGGTTTATTCACATCAACCAC-TTCTGCCAGCTCTGTTTTTCCTTCAATGAC 1187
Query 1161 AACACAGCTGGACTCTAGCACGATGGTTAATTTACCTGCCCCATCTGAGACCATTCCCAA 1220
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1188 AACACAGCTGGACTCTAGCACGATGGTTAATATGCCTGCCCCATCTGAGACCATTCCCAA 1247
Query 1221 GATTGCTGATGTTACGGTGACACCCAAAATGCCTTCTGTTGGTCAGAAGAAACCTCTTGA 1280
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GATTGCTAATGTTACGGTGACACCCAAAATGCCTTCTGTTGGTCAGAAGAAACCTCTTGA 1307
Query 1281 GGCACTAGGTTCTTCGCTGCCACCATCAAGAAAGAGGCAAAAACTATGTGAGACTTCTTC 1340
||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 1308 GGCACTAGGTTCTTCGCTGCCACCATCAAGAAAGAAGCAAAAAATATGTGGGACTTCTTC 1367
Query 1341 AGATGAAAGTATTGAAAAGTTTAATGATGTCACTGCAGTCAGTGGCATTAATCTCAGGGA 1400
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1368 AGATGAAAGTATTGAAAAGTTTAATGATGTCACTGCAGTCAGTGGCATCAATCTCAGGGA 1427
Query 1401 AGAGGAAAAACGATTATTAGGTTCTGGTCCTAAAAAGAACGGTGGTGTTTCTAAAGCATG 1460
||||||||||| |||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 1428 AGAGGAAAAACAATTATTAGATTCTGGTCCTAAAAAGAACGATCGTGTTTCTAAAGCATA 1487
Query 1461 TCGAAGAATTGTGCATGAAGAGGAGGAAAGAACGATTTTGCAGAAAATTCTACTGAAGAG 1520
||||||| ||||||||| |||||| ||||||||| ||||||||||||||| |||| ||||
Sbjct 1488 TCGAAGACTTGTGCATGGAGAGGAAGAAAGAACGCTTTTGCAGAAAATTCCACTGCAGAG 1547
Query 1521 AAAGCTGACAGAAATTATGGCAACAAGTGATTTAAAGCATATAGACCATGATGTAGAGCG 1580
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1548 AAAGCTGACAGAAATTATGGGAAAAAGTGGTTTAAAGCATATAGACCATGATGTAGAGCG 1607
Query 1581 GTGCTTGTCTCTGTGCGTAGAGGAGAGGATGCGAGGACTATTGTCTAATATAATACGAAT 1640
||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1608 GTGCTTGTCTCTGTGTGTGGAGGAGAGGATGCGAGGACTACTGTTTAATATAATACGAAT 1667
Query 1641 ATCAAAGCAGCGGACTGATGCCGAGAAGTGTAGAAATCGGACTTTTATCACGTCTGATAT 1700
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1668 ATCAAAGCAGCGGACTGATGCAGAGAAGTGTAGAAATCGGACTTTTATCACATCTGATAT 1727
Query 1701 CCGGAGAGAAATTAATGAAATGAATCAGAAGGTGAAAGAGGAATGGGAAAAGAAACATGC 1760
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1728 CCGGAAAGAAATTAATGAAATGAATCAGAAGGTGAAAGAGGAATGGGAAAAGAAACATTC 1787
Query 1761 TGGAGAAGATAAGAACGAAGAAAATGATACTGAAAAAGAAGACCAACGTTCAAAAGAAGT 1820
||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1788 TGGAGAAGAAAAGAACAAAGAAAATGATACTGAAAAAGAAGACCAACGTTCAAACGAAGT 1847
Query 1821 GAAGGCAAATAAGAAGGACGAAGATAAAAAGAGAGCTAAGGCTGCAAATGTTGCTGTTCA 1880
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1848 GAAGGCAAATAAGAAGGACGAAGATAAAGAGAGAGCCAAGGCTGCAAATGTTGCTGTTCG 1907
Query 1881 TGCAGCCGTTGGAGGAGATGATAGGTTTTCAAAATGGAAACTTATGGCTGAAGCACGTCA 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 TGCAGCCGTTGGAGGAGATGATAGGTTTTCAAAATGGAAACTTATGGCTGAAGCACGTCA 1967
Query 1941 GAGATCTTCTCCAGGGCCAGGAAGAAACTCCAAGAAACTTTCTGGTGAAATTGGTGGTAC 2000
||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1968 GAGATCTTCTCCAGGGCCAGGAAGAAACTCCAAGAAACTTTCTGGTG-----G-T---AC 2018
Query 2001 ACAATTTGGGAAGAACCAAGGTTTACCAAAACTAGTCCGGTCAATTTCTGTGAAGGATGT 2060
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 2019 ACAATTTGGGAAGAACCAAGGTTTACCAAAAGTAGTCCGGTCAATCTCTGTGAAGGATGT 2078
Query 2061 GATTGCTGTGGTGGAAATGGAGCCTCAGATGTCAAGATCAACGCTATTGTATTGCTTATA 2120
||| ||||||||||||| ||||||||||||||||||||| |||||||||||| || ||||
Sbjct 2079 GATCGCTGTGGTGGAAAAGGAGCCTCAGATGTCAAGATCGACGCTATTGTATCGCGTATA 2138
Query 2121 CAATAGAATCTGCTCGGCTGTTTGA 2145
||||||||||||||||| |||||||
Sbjct 2139 CAATAGAATCTGCTCGGATGTTTGA 2163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106374954855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5