BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472979
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | ch... 1661 0.0
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 100 2e-20
> AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
chr1:9654688-9656089 FORWARD LENGTH=1125
Length=1125
Score = 1661 bits (899), Expect = 0.0
Identities = 1020/1076 (95%), Gaps = 18/1076 (2%)
Strand=Plus/Plus
Query 1 GTTAGAGCGATGGACGTTTTTGTTGATGGTGAATTGGAGTCTCTCTTGGGGATGTTCAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 GTTAGAGCGATGGACGTTTTTGTTGATGGTGAATTGGAGTCTCTCTTGGGGATGTTCAAC 116
Query 61 TTTGATCAATGTTCATCATCTAAGGAGGATAGACCGCGAGACGAGATGCTTGGCCTCTCT 120
||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct 117 TTTGATCAATGTTCATCATCTAAAGAGGAGAGACCGCGAGACGAGTTGCTTGGCCTCTCT 176
Query 121 AGCCTCTACAATGGTCATATTCATCAACATCAACACCATAACAATGTCTTATCTTCTGAT 180
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AGCCTTTACAATGGTCATCTTCATCAACATCAACACCATAACAATGTCTTATCTTCTGAT 236
Query 181 CATCATGCTCTCTTGCTTCCTGACATGTTCCCATTTGGTGCAATGCCGGGAGGAAATCTT 240
||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 237 CATCATGCTTTCTTGCTCCCTGATATGTTCCCATTTGGTGCAATGCCGGGAGGAAATCTT 296
Query 241 CCGGCTATGCTTGATTCTTGGGATCAATA-TCATCACCTCCAAGAAACGCCCTCTCTTAA 299
||||| ||||||||||||||||||||| | ||||||||||||||||||| | ||||||||
Sbjct 297 CCGGCCATGCTTGATTCTTGGGATCAA-AGTCATCACCTCCAAGAAACGTCTTCTCTTAA 355
Query 300 GAGGAAACTACTTGACGTGGAGAATCTATGCAAAACTAACTCTAACTGTGACGTCACAAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGGAAACTACTTGACGTGGAGAATCTATGCAAAACTAACTCTAACTGTGACGTCACAAG 415
Query 360 ACAAGAGCTTGCGAAATCCAAGAAAAAACAGAGGGTAAGCCCGGAAAGCAATACAGTTGA 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 416 ACAAGAGCTTGCGAAATCCAAGAAAAAACAGAGGGTAAGCTCGGAAAGCAATACAGTTGA 475
Query 420 CGAAAGCAACACTAATTGGATAGATGGTCAGAGTTTAAGCAACAGTTCAGATGATGAGAA 479
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CGAGAGCAACACTAATTGGGTAGATGGTCAGAGTTTAAGCAACAGTTCAGATGATGAGAA 535
Query 480 AGCTTCGGTCACAAGTGTTAAAGGCAAAACTAGAGCCACCAAAGGGACAGCCACTGATCC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGCTTCGGTCACAAGTGTTAAAGGCAAAACTAGAGCCACCAAAGGGACAGCCACTGATCC 595
Query 540 TCAAAGCCTTTATGCTCGGAAACGAAGAGAGAAGATTAACGAAAGGCTCAAGACACTGCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 596 TCAAAGCCTTTATGCTCGGAAACGAAGAGAGAAGATTAACGAAAGGCTCAAGACACTACA 655
Query 600 AAACCTTGTGCCAAACGGGACAAAAGTTGATATAAGCACGATGCTTGAAGAAGCGGTCCA 659
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 656 AAACCTTGTGCCAAACGGGACAAAAGTCGATATAAGCACGATGCTTGAAGAAGCGGTCCA 715
Query 660 TTACGTCAAGTTCTTGCAGCTTCAGATTAAGTTGTTAAGCTCGGATGATCTATGGATGTA 719
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 716 TTACGTGAAGTTCTTGCAGCTTCAGATTAAGTTGTTGAGCTCGGATGATCTATGGATGTA 775
Query 720 CGCACCATTGGCTTACAATGGACTCGACATGGGGTTCCATCACAACCTTTTATCTCGGCT 779
|||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||
Sbjct 776 CGCACCATTGGCTTACAACGGCCTGGACATGGGGTTCCATCACAACCTTTTGTCTCGGCT 835
Query 780 TATGTGAAGGACTTACAAGTTAAAATATGTCATTGTAAAGAAACCGAATTTAGAACATAT 839
|||||||||||||||||||||| ||| |||| |||||||||||| | ||||||||||||
Sbjct 836 TATGTGAAGGACTTACAAGTTACAAT--GTCAATGTAAAGAAACCCA-TTTAGAACATAT 892
Query 840 ATATCCATATTTGGGCCAA-CTGAAGAGATCTACCCTAAGATCTTACCAtttttttttCT 898
|||||| |||||| ||||| || ||||||||||| |||||||| ||||||||| || ||
Sbjct 893 ATATCCCTATTTGAGCCAAACTAAAGAGATCTACGCTAAGATCCTACCATTTTCTT--CT 950
Query 899 TGTTGTTCATTCTGATATTTTTCTTATTCTTAATTAACATCTTTTGTCTCTTTCCTCATT 958
|||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||
Sbjct 951 TGTTGTTCATTCTGATATTTTTATTATTCTTAACT----TCTTTTGTCTCTTTCGTCATT 1006
Query 959 ATGGTTCTAAGAACTTTTGGTActctctctct---ctTTTTTGTAATAATATTTTTAAAT 1015
|||||||||||||||||||||||||| | ||| |||||||||||| ||||||||||||
Sbjct 1007 ATGGTTCTAAGAACTTTTGGTACTCTTTTTCTTTTCTTTTTTGTAATTATATTTTTAAAT 1066
Query 1016 TATGAAAAAGTCAACTAAGACTAATTAAATAACA-T--TCTTTCCTTTTGCAATTT 1068
|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 1067 TATGAAAAAGTCAACTCAGACTAATTAAATAACAATCGTCTTTCCTTTTGCAATTT 1122
> AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:17334121-17335234 FORWARD
LENGTH=812
Length=812
Score = 100 bits (54), Expect = 2e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 18 TTTTGTTGATGGTGAATTGGAGTCTCTCTTGGGGATGTTCAACTTTGATCAATGTTCATC 77
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 155 TTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAACTTTGATCAATGTTCATC 214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5