BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472983
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27760.3 | Symbols: SAT32, ATSAT32 | interferon-related deve... 2479 0.0
> AT1G27760.3 | Symbols: SAT32, ATSAT32 | interferon-related developmental
regulator family protein / IFRD protein family |
chr1:9668584-9671616 FORWARD LENGTH=1931
Length=1931
Score = 2479 bits (1342), Expect = 0.0
Identities = 1678/1828 (92%), Gaps = 71/1828 (4%)
Strand=Plus/Plus
Query 1 GTTTCTTCCTTTGGCATAGACGAAAGTCTG-AAActcttctctcttgacctctttctctc 59
||||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1 GTTTCTTCCTTTGGCATCGACGAAAGTCTGAAAACTCTTTTCTCTCCACCTCTTTCTCTC 60
Query 60 tcGATACCCTAAAC-CAAAATCGCCTCTTTAATGGATAAATCGCCTCTCCGATCTCA--- 115
| ||||| |||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 61 T---TACCCCAAACACAAAATCTCCTCTTTAATGGATATATCGCCTCTCCGATCTCATTC 117
Query 116 -T--TC-------T-T-CCAAACTTTTATTG--C-TCTTCTTTTGTAGTTTTCGTG---C 157
| || | | ||||||| |||||| | ||||||||||||||||||||| |
Sbjct 118 TTCCTCGTTTTTATCTGCCAAACTCTTATTGCTCTTCTTCTTTTGTAGTTTTCGTGCTTC 177
Query 158 TTCGA-TTC--CTTCTTCAGTTATTTCCCATCGTTGTAATCCTTCTA-CTTTTCAGTTTC 213
||||| ||| ||||||||||| ||||||||||| |||||||||||| | |||| |||||
Sbjct 178 TTCGATTTCTTCTTCTTCAGTTGTTTCCCATCGTCGTAATCCTTCTAGC-TTTCGGTTTC 236
Query 214 TCTT-ATAATTCCCTTTGAA-TC---AAT-TTC--C--GCAA-AT----AATTGAATCAG 258
| || ||||||||||||||| || | ||| | ||| | || | ||||||
Sbjct 237 T-TTGATAATTCCCTTTGAATTCGTTTTTCTTCTTCTTTCAATTTCCGCAAAT-AATCAG 294
Query 259 CCGCCGATAAGACAAAATCATGGGGAGGAAATCTCAGCGTAAGAACGCGACAATGTTTGA 318
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CCGCCGATAAG--ATAATCATGGGGAGGAAATCTCAGCGTAAGAACGCGACAATGTTTGA 352
Query 319 TAGTGATGATGATACAAGTAGTGTAAGCTCTTCCTCCACCATGCCATCTGAGAGGGTGTT 378
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 353 TAGTGATGATGATACAAGTAGTGTAAGCTCTTCCTCCACCATGCCATCTGAGAGATTGTT 412
Query 379 GAATCCCGGTATGGATGAAGTTACGGTTCACAAAGATGCTTTGTTGGATCAATCCCTTGA 438
|||||| ||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||
Sbjct 413 GAATCCTGGTATGGATGAAGTTACTGTTCTCAAGGATGCTTTGTTAGATCAATCCCTTGA 472
Query 439 TGCTCTCTATGAGAAAAGGAGTTCAACTAGAGAGCAAGCTTTGGCCTCCATTGTTGACGC 498
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 473 TGCTCTCTATGAGAAAAGGAGCTCAACTAGAGAGCAAGCTTTGGCCACCATTGTTGACGC 532
Query 499 ATTCAACAGCGACTTGCAATATGAGTTTGTGGAAAAGAAGTTTGCCACTTTATTGCACCA 558
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 533 ATTTAACAGCGACTTGCAGTATGAGTTTGTTGAAAAGAAGTTTGCCACTTTATTGCACCA 592
Query 559 GTGTTTACACTGCACTAAGAAAGGGTCTACTAAGGAGACCGCATTAGCATCTCATGTCAT 618
||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 593 GTGTTTACACTGCACCAAGAAAGGGTCTACTAAGGAGACTTCATTAGCAACTCATGTCAT 652
Query 619 TGGGTTGCTAGCATTGACTGTTGGACTAGGGGATCAAGCACAAGAGATTTTGGAAGAATC 678
|||||||||||| || ||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 653 TGGGTTGCTAGCGTTAACTGTTGGACTCGGGGATCATGCACAAGAGGTTTTGGAAGAATC 712
Query 679 TGTCACTCCTCTTTCTCAAGCCCTTAAATCTGGTCGTGAAATCTTGAAAATAACTTCGAT 738
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TGTCACTCCTCTGTCTCAAGCCCTTAAATCTGGTCGTGAAATCTTGAAAATAACTTCGAT 772
Query 739 TCTTGAGTGTTTAGCAGTCATAACCTTTGTTGGCGGGAATGATCCAGAGCAAACCGAGAG 798
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 773 ACTTGAGTGTTTAGCAGTCATAACCTTCGTTGGCGGGAATGATCCAGAGCAAACCGAGAA 832
Query 799 ATCTATGCAAATAATCTGGCAAATGATCCACCCCAAACTAGGGTCTAATGTTGTGGCAAC 858
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 ATCTATGCAGATTATCTGGCAAATGATCCACCCCAAACTAGGGTCTAATGTTGTGGCAAC 892
Query 859 TAAACCTTCACCTGCTGTAATTAGTGCTGTTGTCTCTTCCTGGGCGTTTCTGCTCACAAC 918
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 893 TAAACCTTCACCTGCTGTAATAAGTGCTGTTGTATCTTCCTGGGCTTTTCTGCTCACAAC 952
Query 919 AGTTGATCGGTGGACGCTAGGTCCTAAAATTTTTCAAGAGACCGTAACTTATCTCTCTAC 978
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 953 AGTTGATCGGTGGACTCTAGGTCCTAAAATTTTTCAAGAGACTGTAACTTATCTCTCTAC 1012
Query 979 ACTGTTGGAAAAAGATGACCGATCTGTACGTATAGCTGCTGGTGAAGCGCTTGCAGTGAT 1038
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1013 ATTGTTGGAAAAGGATGACCGATCTGTACGTATAGCTGCTGGTGAAGCGCTTGCAGTAAT 1072
Query 1039 ATATGAGTTGGGAACTCTAGAGAAGTTTGCTGCCGAAGTCAAAGGGTCTGCTAATGGATC 1098
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1073 ATATGAGTTGGGAACTCTAGAGAAGTTCGCTGCCGAAGTCAAAGGGTCTGCTAATGGATC 1132
Query 1099 AGTGAAAGAAGGAAGTGTGTCCCAGGAGGCATTGATGCACATGCATGGCTTGAAAGCTAA 1158
||||||||||||| |||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1133 AGTGAAAGAAGGAGGTGTCTCTCAGGAAGCATTGATGCACATGCATGGCTTGAAAGCTAA 1192
Query 1159 AGTCACTAAACAAGTTAGAGAGCTCTCTGCGGAGGCAGGTGGTAAAGGTTCTGCTAAGAA 1218
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1193 AGTCACTAAACAAGTTAGAGAGCTCTCTGTAGAGGCAGGTGGTAAAGGTTCTGCTAAGAA 1252
Query 1219 AGATCTCAACACCCAACGGAATTTGTTCAAAGATCTTGTTGAATTTCTTGAGGATGGGTA 1278
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1253 AGATCTCAACACCCAACGAAATTTGTTCAAAGATCTTGTTGAATTTCTTGAGGATGGATA 1312
Query 1279 CGCTCCTGAAACCTCAACAAAAGTTGGAGGGGACTATTTACAGACGTCAACGTGGTATCA 1338
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1313 TGCTCCTGAAACCTCAACAAAAGTCGGAGGGGACTATTTACAGACGTCAACGTGGTATCA 1372
Query 1339 GATGATACAGTTAAATTATTTGAAGCATTTCCTTGGGGGCGGCTTTATTAAGCATATGCA 1398
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1373 GATGATACAGTTGAATTATTTGAAGCATTTCCTAGGGGGTGGCTTTATTAAGCATATGCA 1432
Query 1399 GGAGAATGAATTCCTTCATGATGTATTTAGTTTCACTCCAAAGAAGATTGGTGGAGGAAA 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GGAGAATGAATTCCTTCATGATGTATTTAGTTTCACTCCAAAGAAGATTGGTGGAGGAAA 1492
Query 1459 GTTGTCTAATGACGAAAAGAGGTTGTTTAAATCACCAAACTCAGCTCTCAACAAAGCAAG 1518
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1493 GTTGTCTAATGACGAAAAGAGGTTGTTTAAATCACCAAACTCAGCTCTTAACAAAGCAAG 1552
Query 1519 AACGCAGTTCCTGGCCAAGCAGAGGATGTTAGCTAAGAATATGAACGTTGGGCATTACGC 1578
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1553 AACGCAGTTCCTGGCCAAGCAAAGGATGTTAGCTAAGAATATGAACGTTGGGCATTACGC 1612
Query 1579 AGCGACAGCAATGATGGAGGAAGAATGATCGCTTTTCAATTGATTTT-GAAGCTT--TG- 1634
||| ||||||||| | |||||||||||| ||| | ||||||||||| |||| | ||
Sbjct 1613 AGCTACAGCAATG--G-AGGAAGAATGATGGCTCTACAATTGATTTTTGAAGAATGATGG 1669
Query 1635 CACACTCATCTGCTGCTTTTGGAAAGTGTTGTTGTATC-ATTACTACTACACTTTTTCTT 1693
||||||||||||||||||||||||| ||||||||| || |||| ||| || ||||||||
Sbjct 1670 CACACTCATCTGCTGCTTTTGGAAAATGTTGTTGT-TCCATTAGTAC-AC--TTTTTCTT 1725
Query 1694 GTTTCATGTTTTTGAT---A-A-TTGGTTCCATCATATTATAACCAACACTTAGAAATCT 1748
|||||||||||||||| | | ||||||||| |||||||||||||| ||||||||| |
Sbjct 1726 GTTTCATGTTTTTGATTTGATAATTGGTTCCA--ATATTATAACCAACTCTTAGAAATGT 1783
Query 1749 CTTTTCAC--ATAACAATTTTCGACCGT 1774
||||||| ||||||||||||||||||
Sbjct 1784 CTTTTCATTTATAACAATTTTCGACCGT 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90812785905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5