BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472988
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27840.3 | Symbols: ATCSA-1 | Transducin/WD40 repeat-like su... 2198 0.0
AT1G19750.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2152 0.0
> AT1G27840.3 | Symbols: ATCSA-1 | Transducin/WD40 repeat-like
superfamily protein | chr1:9693008-9696364 REVERSE LENGTH=1787
Length=1787
Score = 2198 bits (1190), Expect = 0.0
Identities = 1303/1358 (96%), Gaps = 5/1358 (0%)
Strand=Plus/Plus
Query 1 ATGTGGAAGGCTATCAAAGACAGAGAAACCGGTCGAATTCGTTCCAATTCCTTCGCCAAT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 ATGTGGGAGGCTATCAAAGACAGAGAAACCGGTCGAATTCGTTCCAATTCCTTCGCCAAT 167
Query 61 CGATTCAAATCCCGCCGGATTTTGTCTCTCCAACTCTCTAATCGAAAAGATTTTGTTTCT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 168 CGATTCAAATCCCGCCGGATTTTGTCTCTCCAACTCTCTAATCGAAAAGACTTTGTTTCT 227
Query 121 CCTCATCGTGGCTCCGTTAACTCCCTTCAGGTTGATTTGACGGAGGGGAGATATCTTCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 CCTCATCGTGGCTCCGTTAACTCCCTTCAGGTTGATTTGACGGAGGGGAGATATCTTCTC 287
Query 181 TCTGGAGCAGCAGATGGTTCAGCTGCTGTATTTGATCTTCAGCGGGCCACTGATTACGAG 240
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 288 TCTGGAGCAGCAGATGGTTCAGCTGCTGTATTTGATGTTCAACGGGCCACTGATTACGAG 347
Query 241 GCAAGTGGTCTTATTGCCAAGCACAAGTGTATATTTACTGTCGACAAGCAACATGATAAT 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 348 GCAAGTGGTCTAATTGCCAAGCACAAGTGTATATTTACTGTCGACAAGCAACATGAAAAT 407
Query 301 GGACATAAATTTGCCATATCCTCTGCCATATGGTATCCCATTGACACTGGGCTGTTCATT 360
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 408 GGACATAAATATGCCATATCCTCTGCCATTTGGTATCCCATTGACACTGGGCTCTTCATT 467
Query 361 ACAGGTTCTTATGATCATTACTTAAAAGTCTGGGATACCAATACTGCCCAGGCAGTTGTG 420
|||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 468 ACAGGTTCTTTTGATCATTACTTAAAAGTCTGGGATACCAATACTGCTCAGGCGGTTGTG 527
Query 421 GATTTTAAAATGCCTGGAAAGGTTTATAGAACTGCCATGTCTTCTATGGCAATGTCTCAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GATTTTAAAATGCCTGGAAAGGTTTATAGAACTGCCATGTCTTCTATGGCAATGTCTCAC 587
Query 481 ACGTTGATTGCTGCTGGAACTGAAGATGTCCAGGTTCGCCTCTGTGATATAGCTTCTGGG 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 ACGTTAATTGCTGCTGGAACTGAAGATGTCCAGGTTCGCCTCTGTGATATAGCTTCTGGG 647
Query 541 GCATTCTCTCACACATTATCGGGTCACCGTGATGGTGTTATGTCAGTTGAATGGTCTACT 600
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 648 GCATTCTCTCACACATTATCGGGTCACCGTGATGGCGTTATGTCAGTGGAATGGTCTACT 707
Query 601 TCCAGCGAGTGGGTTTTGTATACTGGGGGGTGTGATGGTGCAATACGTTTCTGGGACATC 660
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 708 TCCAGCGAGTGGGTTTTGTATACTGGGGGTTGTGATGGTGCAATACGTTTCTGGGACATT 767
Query 661 AGACGTGCTGGATGTTTCCGTGTGCTAGATCAATCACAAACACAACTTGGGATCCGACCA 720
||||| ||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct 768 AGACGGGCTGGTTGTTTCCGTGTTCTAGATCAATCACAGACACAACTTGGGTTCCGACCA 827
Query 721 CCAATTCTAAAGCGAACAGCGGTTAGCAGTAAGTTTTATTCAGCTGCAAAATCTTCTTTG 780
|||||| |||||||||| |||||| |||||||| ||| ||||| ||||||||||||||||
Sbjct 828 CCAATTTTAAAGCGAACTGCGGTTGGCAGTAAGCTTTCTTCAGTTGCAAAATCTTCTTTG 887
Query 781 GGGGGCCAAAATAGGTTGAAAACACTGCAAAGTAAACACACTGGCAGCCAAAGTGTAAAG 840
|||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||
Sbjct 888 GGGGGCCAAAATAGGTTGAAGACACTGCAGAGTAAACAAACTGGAAGCCAAAGTGTAAAG 947
Query 841 GGATCATCTAGCGCTAAAGCTTCAACGGAAAAGTCTCGACAGAAGAGAATTCACCCTGGA 900
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 948 GGATCATCTAGCGCTAAAGCTTCAGTGGAAAAGTCTCGACAGAAGAGAATTCACCCTGGA 1007
Query 901 ATGTTATCTACTCTAGATCGTGCTACGGCTCATTATGGTGTTGTTACTGGCTTAAAGGCA 960
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1008 ATGTTATCTACTCTAGATCGTGCTACGGCTCATTATGGTGCTGTTACTGGCTTAAAGGCA 1067
Query 961 ACTAACGATGGGATGTATCTTCTTAGTGCTGGGTCGGATTCAAGAATAAGATTGTGGGAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 ACTAACGATGGGATGTATCTTCTTAGTGCTGGGTCGGATTCAAGAATAAGATTGTGGGAT 1127
Query 1021 ATTGAATCTGGACGCAATACCCTGGTGAACTTTGAAACTGGACGCATCCAGACAAACAAA 1080
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1128 ATTGAATCTGGACGCAACACCCTGGTGAACTTTGAAACTGGACGCATCCAGACTAACAAA 1187
Query 1081 GCGATTC-AATTAGATACAAGCGATGATCCAGCGCTTGTATTTGTTCCGTGCATGAAGAC 1139
| || || ||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 1188 G-GAATCCAATTAGATACAAGCGATGATCCAGCTCTGGTATTTGTTCCATGCATGAAGAC 1246
Query 1140 TGTGAAG--A-CTTTTGGCATGTGGTCGGGTAGAACAACACTGATGCTTCGTGGACACTA 1196
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TGTGAAGGTAGCTTTTGGCATGTGGTCGGGTAGAACAACACTGATGCTTCGTGGACACTA 1306
Query 1197 CGAAAGCGTGAACACTTGCTGCTTTAATTCCAGTGATCAGGAACTATATACAAGTGGCGC 1256
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
Sbjct 1307 CGAAAGCGTGAACACTTGCTGCTTTAATTCCAATGATCAGGAACTATACACAAGTGGCTC 1366
Query 1257 AGATAGACAAATACTTGTGTGGTCACCAGGCGGATCGGTGGAAGACGAAATGGTGCAGGA 1316
|||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||
Sbjct 1367 AGATAGACAAATACTTGTGTGGTCACCAGGCGGAACAGTGGAAGATGAAATGGTGCAAGA 1426
Query 1317 TGAAGTAGCCGAAGATAAAGACAACTGGAGCGACTGAG 1354
|||||||||||||||||||||||| |||||||||||||
Sbjct 1427 TGAAGTAGCCGAAGATAAAGACAATTGGAGCGACTGAG 1464
> AT1G19750.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:6826997-6830063 FORWARD LENGTH=1355
Length=1355
Score = 2152 bits (1165), Expect = 0.0
Identities = 1294/1357 (95%), Gaps = 6/1357 (0%)
Strand=Plus/Plus
Query 1 ATGTGGAAGGCTATCAAAGACAGAGAAACCGGTCGAATTCGTTCCAATTCCTTCGCCAAT 60
|||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGTGGAAGGCTTTTAAAGACAGAGAAACCGGTCGATTTCGTTCCAATTCCTTCGCCAAT 60
Query 61 CGATTCAAATCCCGCCGGATTTTGTCTCTCCAACTCTCTAATCGAAAAGATTTTGTTTCT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CGATTCAAATCCCGCCGGATTTTGTCTCTCCAGCTCTCTAATCGAAAAGATTTTGTTTCT 120
Query 121 CCTCATCGTGGCTCCGTTAACTCCCTTCAGGTTGATTTGACGGAGGGGAGATATCTTCTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CCTCATCGTGGCTCCGTTAACTCCCTTCAGGTTGATTTGACGGAGGGGAGATATCTGCTC 180
Query 181 TCTGGAGCAGCAGATGGTTCAGCTGCTGTATTTGATCTTCAGCGGGCCACTGATTACGAG 240
|||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 181 TCTGGAGCAGCAGATGGTTCAGCTGCTGTATTTGATGTTAAGCGGGCCACCGATTACGAG 240
Query 241 GCAAGTGGTCTTATTGCCAAGCACAAGTGTATATTTACTGT-CGACAAGCAACATGATAA 299
||||||||||| |||||||||||||||||||| |||||||| || ||||||||||| ||
Sbjct 241 GCAAGTGGTCTAATTGCCAAGCACAAGTGTATTTTTACTGTCCG-TAAGCAACATGAAAA 299
Query 300 TGGACATAAATTTGCCATATCCTCTGCCATATGGTATCCCATTGACACTGGGCTGTTCAT 359
||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 300 TGGACATAAATATGCCATATCCTCTGCCATTTGGTATCCCATTGACACTGGGATGTTCAT 359
Query 360 TACAGGTTCTTATGATCATTACTTAAAAGTCTGGGATACCAATACTGCCCAGGCAGTTGT 419
||||||||||| |||||||||| ||||||| ||||||||||||||| | |||| |||||
Sbjct 360 TACAGGTTCTTTTGATCATTACGTAAAAGTATGGGATACCAATACTTCGCAGGTGGTTGT 419
Query 420 GGATTTTAAAATGCCTGGAAAGGTTTATAGAACTGCCATGTCTTCTATGGCAATGTCTCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGATTTTAAAATGCCTGGAAAGGTTTATAGAACTGCCATGTCTTCTATGGCAATGTCTCA 479
Query 480 TACGTTGATTGCTGCTGGAACTGAAGATGTCCAGGTTCGCCTCTGTGATATAGCTTCTGG 539
||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 480 CACGTTAATTGCTGCTGGAACTGATGATGTCCAGGTTCGCCTCTGTGATATTGCTTCTGG 539
Query 540 GGCATTCTCTCACACATTATCGGGTCACCGTGATGGTGTTATGTCAGTTGAATGGTCTAC 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 GGCATTCTCTCACACATTATCGGGTCACCGTGATGGTGTTATGTCAGTGGAATGGTCTAC 599
Query 600 TTCCAGCGAGTGGGTTTTGTATACTGGGGGGTGTGATGGTGCAATACGTTTCTGGGACAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCCAGCGAGTGGGTTTTGTATACTGGGGGGTGTGATGGTGCAATACGTTTCTGGGACAT 659
Query 660 CAGACGTGCTGGATGTTTCCGTGTGCTAGATCAA-TCACAAACACAACTTGGGATCCGAC 718
|||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||
Sbjct 660 CAGACGTGCTGGATGTTTCCGTGTTCTAGAT-AACTCACAAACACAACTTGGGGTCCGAC 718
Query 719 CACCAATTCTAAAGCGAACAGCGGTTAGCAGTAAGTTTTATTCAGCTGCAAAATCTTCTT 778
|||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 719 CACCAATTTTAAAGCGACCAGCGGTTAGCAGTAAGTTTTTTTCAGCTGCAAAATCTTCTC 778
Query 779 TGGGGGGCCAAAATAGGTTGAAAACACTGCAAAGTAAACACACTGGCAGCCAAAGTGTAA 838
|||||| ||||||| ||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 779 TGGGGGACCAAAATTGGTTGAAGACATTGCAGAGTAAACACACTGGCAGCCAAAGTGTAA 838
Query 839 AGGGATCATCTAGCGCTAAAGCTTCAACGGAAAAGTCTCGACAGAAGAGAATTCACCCTG 898
||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 839 AGGGATCATCTAGCGAGAAACCTTCAGTGGAAAAGTCTCGACAGAAGAGAATTCACCCTG 898
Query 899 GAATGTTATCTACTCTAGATCGTGCTACGGCTCATTATGGTGTTGTTACTGGCTTAAAGG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAATGTTATCTACTCTAGATCGTGCTACGGCTCATTATGGTGTTGTTACTGGCTTAAAGG 958
Query 959 CAACTAACGATGGGATGTATCTTCTTAGTGCTGGGTCGGATTCAAGAATAAGATTGTGGG 1018
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 959 CAACTAACGATGGGATGTATCTTCTTAGTGCTGGGTCGTATTCAAGAATAAGATTGTGGG 1018
Query 1019 ATATTGAATCTGGACGCAATACCCTGGTGAACTTTGAAACTGGACGCATCCAGACAAACA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1019 ATATTGAATCTGGACGCAATACCCTGGTGAACTTTGAAACTGGACGCATCCAGACAGACA 1078
Query 1079 AAGCGATTCAATTAGATACAAGCGATGATCCAGCGCTTGTATTTGTTCCGTGCATGAAGA 1138
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1079 GAGCGATTCAATTAGATACAAGCGATGATCCAGCTCTCGTATTTGTTCCGTGCATGAAGA 1138
Query 1139 CTGTGAAGACTTTTGGCATGTGGTCGGGTAGAACAACACTGATGCTTCGTGGACACTACG 1198
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTGTGAAGGGTTTTGGCATGTGGTCGGGTAGAACAACACTGATGCTTCGTGGACACTACG 1198
Query 1199 AAAGCGTGAACACTTGCTGCTTTAATTCCAGTGATCAGGAACTATATACAAGTGGCGCAG 1258
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1199 AAAGCGTGAACACTTGCTGCTTTAATTCCAATGATCAGGAACTATACACAAGTGGCGCAG 1258
Query 1259 ATAGACAAATACTTGTGTGGTCACCAGGCGGATCGGTGGAAGACGAAATGGTGCA-GGAT 1317
||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||| || |
Sbjct 1259 ATAGACAAATAATTGTGTGGTCACCAGGCGGATCCGTGGAAGATGAAATGGCGCAAGG-T 1317
Query 1318 GAAGTAGCCGAAGATAAAGACAACTGGAGCGACTGAG 1354
|||||||| ||||||||||||||||||||||||||||
Sbjct 1318 GAAGTAGCTGAAGATAAAGACAACTGGAGCGACTGAG 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5