BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472990
Length=2859
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family pro... 3781 0.0
> AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:9708924-9714089 FORWARD LENGTH=2940
Length=2940
Score = 3781 bits (2047), Expect = 0.0
Identities = 2330/2464 (95%), Gaps = 30/2464 (1%)
Strand=Plus/Plus
Query 405 AGCCTCCGAATCTCATCACCGACACTATAACTTCTCCTCCGGTGAAACCTATGGTGTTTC 464
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 447 AGCCTCCGAATCTCATCACCGATACTATAACTTCTCCTCCGGTGAAACCTATGGTGTTTC 506
Query 465 GTAGCAGCGGTAACGGCGAGGGTAATTTCGTGAAGTTGAACTTAAATGGCAAGAGAGGGA 524
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 507 GTAGCAACGGTAACGGCGAGGGTAATTTCGTGAAATTGAACTTAAATGGCAAGAGAGGGA 566
Query 525 AGAAGTTTCCCAGCAAATACAAGGGCGTCTCTAAATCTAGAAGCAATTACGCATTCAGAG 584
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 567 AGAAGTTTCCCAGCAAATACAAGGGCGTCTCTAAATCTAGAAGCAGTTACTCATTCAGAG 626
Query 585 GGAAGAGATACAAGAAGAAAGAAGCTGATGGTGATGGTGAATCATTGTTGGAGGAAGAGT 644
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 627 GGAAGAGATACAAGAAGAAAGAAGCTGATGGTGATGGCGAATCATTGTTGGAGGAAGAGT 686
Query 645 CTGATTTGCAGAAACAGGTAGAAGAAGAAGCTAATGGTTTTATTAGCTCAGTGGAGGATG 704
||||||| ||||||||| ||||||| ||||||||||||||||||||||| || |||||||
Sbjct 687 CTGATTTACAGAAACAGATAGAAGACGAAGCTAATGGTTTTATTAGCTCTGTAGAGGATG 746
Query 705 CCATTCTTGCTGTGAAGGCTGAGGCTTCTGATGAGCATCTAACGAAGCTGTTGAATTTAG 764
| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 747 CGATTCTTGCTGTGAAGACTGAGGCTTCTGATGAGAATCTAACGAAGCTGTTGAATTTAG 806
Query 765 TTTATGGTTATGATTCTTTTCGAGATGGGCAGTTGCAGGCGATCAAGATGATTCTTGGTG 824
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 807 TTTATGGTTATGATTCTTTTCGAGACGGACAGTTGCAGGCGATTAAGATGATTCTTGGTG 866
Query 825 GGAGTTCAACGATGCTGGTATTGCCTACCGGTGCTGGTAAGTCTCTCTGCTACCAGATTC 884
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 867 GGAGTTCAACGATGCTGGTATTGCCTACTGGTGCTGGTAAGTCTCTCTGCTACCAGATTC 926
Query 885 CGGCAATGATTCTTCCGGGAATCACGCTTGTAGTGAGTCCTTTGGTTTCGTTGATGATCG 944
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 927 CGGCAATGATTCTTCCTGGAATCACGCTTGTAGTGAGTCCTTTGGTTTCGTTGATGATTG 986
Query 945 ATCAGTTGAAGCATTTGCCTTCGATTATTAAGGGTGGTCTCTTGAGCAGTAGCCAGAGAC 1004
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 987 ATCAGTTGAAGCATTTGCCTTCTATCATTAAGGGTGGTCTCTTGAGCAGTAGCCAGAGAC 1046
Query 1005 CTGAGGAAACAACGGAGACGTTGCGGAAACTCAGAGAAGGCATAATTAAGGTTCTCTTTG 1064
|||||||| |||||||||| ||||||||||| | |||||||||||| |||||||||||||
Sbjct 1047 CTGAGGAAGCAACGGAGACATTGCGGAAACTTAAAGAAGGCATAATAAAGGTTCTCTTTG 1106
Query 1065 TATCTCCCGAGAGACTTCTGAATGTAGAATTTCTGTCGATGTTTCGCATGTCTCTATCTG 1124
||||||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 1107 TATCTCCTGAGAGACTTCTGAATGTAGAATTTTTGTCAATGTTTCGCATGTCTTTATCTG 1166
Query 1125 TGCCACTTGTCGTTGTGGATGAGGCACACTGCGTATCAGAATGGTCTCATAACTTCCGTC 1184
|| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 TGTCACTTGTCGTGGTTGATGAGGCACACTGCGTATCAGAATGGTCTCATAACTTCCGTC 1226
Query 1185 CTTCATATATGAGACTCAAGGCATCAATGCTGTTTTCTGAACTCAAGGCAAAATGCATTC 1244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1227 CTTCATATATGAGACTCAAGGCATCAATGCTGTTTTCTGAACTCAAGGCAGAATGCATTC 1286
Query 1245 TCGCGATGACTGCAACTGCCACTACGATGACTCTTCAGGCTGTCATGTCTGCACTAGAGA 1304
|||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1287 TCGCGATGACCGCAACTGCCACTACAATGACTCTTCAGGCTGTCATGTCTTCACTAGAGA 1346
Query 1305 TACCGTCAACCAATCTTATTCAGATGTCACAACTTAGAGACAATTTTGAGTTGTCTGTCT 1364
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1347 TACCGTCAACCAATCTTATTCAGAAGTCACAACTCAGAGACAATTTTGAGTTGTCTGTCT 1406
Query 1365 CATTGAGTGGAGCTAACAGGCAATTAATGAAAGATCTATTGATTTTGATGGAGTCTCATC 1424
|||||||||||||||| | | |||||||||||||||||||||||||||||||| ||
Sbjct 1407 CATTGAGTGGAGCTAATA-G-----AATGAAAGATCTATTGATTTTGATGGAGTCTCCTC 1460
Query 1425 CATATAAGGAGATTCGAAGCATCATTGTGTACTGCAAATTTCAATATGAGACTGACATGA 1484
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1461 CATATAAGGAGATTCGAAGCATCATTGTGTACTGCAAATTTCAGTATGAGACTGACATGA 1520
Query 1485 TAAGCAAGTATTTACGTGATAACAACATCAATGCAAAGGGTTATCACAGTGGTCTTCCTG 1544
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 TAAGCAAGTATTTACGCGATAACAACATCAATGCAAAGGGTTATCACAGTGGTCTTCCTG 1580
Query 1545 CGAAGGACCGTGTTCGCATACAAGAGTCATTTTGTTCCAACAAGATTAGAGTGGTTGTTG 1604
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1581 CGAAGGACCGTGTTCGCATACAGGAGTCATTTTGTTCCAACAAGATTAGAGTGGTTGTTG 1640
Query 1605 CAACTGTGGCATTCGGCATGGGACTTGACAAGGGAGATGTTGGAGCTGTAATTCACTTCA 1664
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1641 CAACTGTAGCATTCGGCATGGGACTTGACAAGGGAGATGTAGGAGCTGTAATACACTTCA 1700
Query 1665 GCCTGCCAGGCAGTATGGAAGAATACGTTCAGGAAATTGGACGTGCTGGTCGCGACGGGC 1724
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 GCGTGCCAGGCAGTATGGAAGAATACGTTCAGGAAATTGGACGTGCTGGTCGCGACGGGC 1760
Query 1725 GGTTGTCTTATTGTCATCTCTTTTATGATAATGACACATATCTAAAGCTTCGGAGTCTTG 1784
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 GGTTGTCATATTGTCATCTCTTTTATGATAATGACACATATCTAAAGCTTCGGAGTCTTG 1820
Query 1785 CACACAGTGATGGTGTTGATGAATATGCCGTTGGAAAATTTCTCACCCATGTGTTTTCCA 1844
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1821 CACACAGTGATGGTGTCGATGAATATGCAGTTGGAAAATTTCTCACCCATGTATTTTCCA 1880
Query 1845 CTGAGACAAAGCAACAAGAGATGATATGCTCGCTAGTCATTGAATCTGCCTCTCAAAAAT 1904
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1881 CTGAGACAAAGCAACACGAGAAGATATGCTCGCTAGTCATTGAATCTGCCTCTCAAAAAT 1940
Query 1905 TTGACATGAAGGAAGAGGTTATGCAAACGATTTTGACACATTTGGAGCTGGGGGAAGTGC 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 TTGACATGAAGGAAGAGGTTATGCAAACGATTTTGACACATTTGGAGCTGGGGGAAGTGC 2000
Query 1965 AATACCTACGTATGCTTCCACAACTTAACATATGTTGTACTTTGAATTTCCACAAGTCTT 2024
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2001 AATACCTACGTATGCTTCCACAACTCAACATATGTTGCACTTTGAATTTCCACAAGTCTT 2060
Query 2025 CTCCAAACACTCTGGCTGCACGAAGTACCATAGTTGCAGCAATTCTGAAGAAGTCTCACG 2084
||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2061 CTCCAAACACTCTTGCTGCACGAAGTGCCATAGTTGCAGCAATTTTGAAGAAGTCTCACG 2120
Query 2085 TGAAGCAAGGGTTACATGTCTTCGATATAACC-GCTGTGGCCTCTAGCATATGTGTTGCA 2143
|||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 2121 TGAAGCAAGGGTTACATGTCTTTGATAT-ACCAGCTGTGGCCTCTAGCATATGTGTTGCA 2179
Query 2144 ACAACAGATGTCTTGGCTGAGATTCAAGCTCTGAAGATGAAGTGGGAAGTAACATACGAA 2203
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2180 ACAACAGATGTCTTGGCTGAGATTCAAGCTCTGAAGATGAAGGGGGAAGTAACATACGAA 2239
Query 2204 TTGAAGGAC-CCAGCCTTTTGTTACACAATCTTAAAATCTCCAAGGGAAATATGTTCATT 2262
||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2240 TTGAAGGACTCC-GCCTTTTGTTACACAATCTTAAAATCTCCAAAGGAAATATGTTCATT 2298
Query 2263 GTCCAGTCATCTTACCAAGTGGCTCACAGAGATTGAAAGTTGCAAAGTGAGAAAACTGGA 2322
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2299 GTCCAGTCATCTAACCAAGTGGCTCACAGAGATTGAAAGTTGCAAAGTGAGAAAACTGGA 2358
Query 2323 TATTATGTCTAGTGCAGCTGTGGCTGCGATTAGTGTCTCTAACACTTCAGAACTGAGTTC 2382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2359 TATTATGTCTAGTGCAGCTGTGGCTGCGATTAGTGTCTCTAACACTTCAGAACTGAGTTC 2418
Query 2383 TGGTGCCAAGCAAACTCTGAGCCTGCAAAGTAGAATTTTTGATTACTTCAATGGTGACGA 2442
||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 2419 TGGTGCCAAGCAAACTCGGAGCCTGCAAAGCAGAATCTTTGATTACTTCAATGGTGATGA 2478
Query 2443 AAAGTGTGACACTCCGAGCAAGACGACTCAAAATTGTGCCTTTCTACGAGCAGACATAAA 2502
||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 2479 AAAGTGTGACAGTCCGAGCAAGGCTACTCAAAATTGCGCCTTTCTACGAGCAGACATAAA 2538
Query 2503 GGtttttttGCAGAGTAATCGCCAAGCCAAATTCACACCAAGAGCCATCGCGAGAATAAT 2562
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2539 GGTGTTTTTGCAGAGTAATCGCCAAGCCAAATTCACACCAAGAGCCATCGCGAGAATAAT 2598
Query 2563 GCATGGAGTTGGAAGTCCAGCTTTTCCAAATTCAGTCTGGTCCAAGACTCATTTCTGGGG 2622
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2599 GCACGGAGTTGGAAGTCCAGCTTTTCCGAATTCAGTCTGGTCCAAGACTCATTTCTGGGG 2658
Query 2623 AAGGTATATGAGCGTAGAGTTCCGTGTGATAATGGATGCGGCACAAACAGAGCTGTTCAA 2682
||||||||||| |||||| ||||| ||||||||||| ||||||||||||||| |||||||
Sbjct 2659 AAGGTATATGAACGTAGACTTCCGAGTGATAATGGAAGCGGCACAAACAGAGTTGTTCAA 2718
Query 2683 TTTTGTTGACAGAAATGCAGCTTTAGCTACATAG-A-AGGCT-ACTTGACTTAATAAGT- 2738
|||||||||||| || ||||||||||||||||| | | | | | | ||| | |||
Sbjct 2719 TTTTGTTGACAGGAACGCAGCTTTAGCTACATAACATAAGATTAGAGG-CTT--TGAGTA 2775
Query 2739 GAGTCACAATGA-ATATA--TT-AGTGTGTAAATCTAACTTTTAGATTCATT-AAAGTAT 2793
|| || | || || || || | | |||| | || || |||||||||| |||||||
Sbjct 2776 GATTCTTAG-GATATTTAAATTTATT-TGTAT-TGTA--TTCTAGATTCATTGAAAGTAT 2830
Query 2794 TTAGTAAAGAGAAATTGTATCATAACAAGACAGTTGAGAGAATTGTTTGGATCGACAAGA 2853
|||||||||||||||| ||||| | || |||||||||||||||| |||||||||||
Sbjct 2831 CCAGTAAAGAGAAATTGTGTCATATGA-GA--GTTGAGAGAATTGTTTTGATCGACAAGA 2887
Query 2854 AAAG 2857
||||
Sbjct 2888 AAAG 2891
Score = 525 bits (284), Expect = 9e-148
Identities = 366/405 (90%), Gaps = 8/405 (2%)
Strand=Plus/Plus
Query 4 AAATTGTCCCATGGATTCCGATTCAGACTCCGATGGTTCTCATGTCTCCGCCACTCCTCC 63
||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 AAATTCTCCGATGGATTTCGATTCAGACTCCGATGGTTCTCATGTCTCCGCCACTCCTCC 66
Query 64 CCGAGACTCATTTCCGCCATCGCCGCCGCCACTTCTTCAGCCACCGCCTAAGCATGTGCC 123
|||||||||||||||| |||||||||||| ||||| || ||||| |||||||||||||
Sbjct 67 CCGAGACTCATTTCCGTCATCGCCGCCGCAACTTC---AGTCACCGGCTAAGCATGTGCC 123
Query 124 GCCGGTCTCCCGGAAAATTACGTCTTCTTCCTCTCGCTCGAAGCCCAAAGCACTTACACA 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 124 GCCGGTCTCCCGGAAAATGACGTCTTCTTCCTCTCGCTCGAAGCCCAAAGCACCTACACA 183
Query 184 GCCGCCTCCTAATCCCTCACAGGAAGCTCCAACATCATTTTCC---cctcctcctcctcc 240
||||| || ||||||||||||||||||||| | | | | || ||||||||||||||
Sbjct 184 TCCGCCGCCAAATCCCTCACAGGAAGCTCCAGTACCGTCTCCCTATCCTCCTCCTCCTCC 243
Query 241 tccATCTCCATTATTCACCGATCTCCCTTTCCGGATCTGCGAATCCCAACCCGCTAGGTT 300
|||||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 244 TCCATCTCCACTATTTACCAATCTCCCTTTCCGGATCTGCCAATCCCAACCCGCTAGGTT 303
Query 301 TTCTTCTTCCATATCGTCCTT-TCCCAGACTCCGCAGCAGAGCTTCTTTTACACCTAATG 359
|||||||||| | |||||||| ||| |||||| |||||||||||||||||||| || ||
Sbjct 304 TTCTTCTTCCGTGTCGTCCTTCTCC-AGACTCTGCAGCAGAGCTTCTTTTACATCTGTTG 362
Query 360 AGAAATTGAAATCAGACGGCGTCGATTTTGTGCCGGAGCCGCCTC 404
||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 363 AGAAATTGAAATCGGACGGCGTCGATTTTGTGCCTGAGCCACCTC 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142072782576
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5