BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472993
Length=1747
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27920.1 | Symbols: MAP65-8 | microtubule-associated protein... 2556 0.0
AT1G27921.1 | Symbols: | other RNA | chr1:9728124-9730331 REVE... 185 1e-45
> AT1G27920.1 | Symbols: MAP65-8 | microtubule-associated protein
65-8 | chr1:9726948-9729848 FORWARD LENGTH=1847
Length=1847
Score = 2556 bits (1384), Expect = 0.0
Identities = 1615/1725 (94%), Gaps = 22/1725 (1%)
Strand=Plus/Plus
Query 36 AAAAGAAAAGACAACATTGCAGAGCTATCCATCCGAAGATGGGATCCCTTCAGACACCGA 95
||||||||||| ||||||||||| |||||||||||| ||||| || |||||||||||||
Sbjct 121 AAAAGAAAAGAAAACATTGCAGAATTATCCATCCGAATATGGGTTCGCTTCAGACACCGA 180
Query 96 TAGGAATGAGAAGCTCCTCTTTGTTAGATACATCCTGCGGATATTTGCTCAGAGAGTTAC 155
||| |||||||||||| || ||||| ||||| ||||||||||||||||||||||||||
Sbjct 181 TAGAAATGAGAAGCTCATCGTTGTTGGATACGTCCTGCGGATATTTGCTCAGAGAGTT-- 238
Query 156 AGGCAAGTTTATGATATGGGATGAAGTTGGAGAAGATAAGTTTGAGAGAGAAAAAGTGTT 215
| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 A--C-AG---ATGATATGGGATGAAGTTGGAGAAGATAAGTTTGAGAGAGAAAAAGTGTT 292
Query 216 GCTTGATATAGAGCAGGAATGTGTAGAGGCTTACCGGAGAAAAGTTGACCAGGCCAATGT 275
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 293 GCTTGATATAGAGCAGGAATGTGTAGAGGCTTACCGGAGAAAAGTTGACCATGCCAATGT 352
Query 276 TTCAAGGTCTCGTCTACATCAAGAGCTGGCAGAAACTGAAGCCGAAGTCACCCATTTTCT 335
||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 353 TTCGAGGTCTCGTCTACATCAAGAGCTGGCAGAATCTGAAGCCGAACTCACCCATTTTCT 412
Query 336 TTTGTGCCTCGGTGAAAGATCAGTACCTGGAAGGCCGGAGAAAAAGGGAGGAACACTGAG 395
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 413 TTTGTGCCTCGGTGAAAGATCAGTACCTGGAAGACCGGAGAAAAAGGGAGGAACACTGAG 472
Query 396 GGAGCAGCTGGATTCTATTGCGCCTGCACTGCGTGAGATGAGGCAGAGGAAAGATGAGAG 455
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 473 GGAGCAGCTGGATTCTATTGCGCCTGCACTGCGTGAGATGAGGCTTAGGAAAGACGAGAG 532
Query 456 AGTGAAGCAGTTCCGATCTGTCAAAGGGGAAATTCAGAAAATTTCAGCAGAAATCGCAGG 515
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 533 AGTGAAGCAGTTCCGATCTGTCAAAGGGGAAATTCAGAAAATATCAGCAGAAATAGCAGG 592
Query 516 TAAACCAACATATGAAGACTCATCTAGAAAGATAACCATAGATGACAACGATCTTTCTGA 575
|| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 593 TAGATCGACATATGAAGACTCAACTAGAAAGATAACCATAGATGACAACGATCTTTCTAA 652
Query 576 TAAGAAACTCGAGGAATATCAGAACGAACTGCATAGACTCAATGATGAGAAGAATGAGAG 635
||| ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 653 TAAAAAACTTGAGGAATATCAGAATGAACTGCATAGACTCCATGATGAGAAGAATGAGAG 712
Query 636 ACTACAGAAGGTTGATATATACATATGCGCCATTCGAGATCTATCAGCTACATTGGGAAC 695
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 713 ACTACAGAAGGTTGATATATACATATGCGCCATTCGAGATCTATCAGCAACATTGGGAAC 772
Query 696 AGAAGCATCAATGATCATAACAAAGATTCACCCAAGCCTGAACGACCTCTATGGAATATC 755
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 773 AGAAGCATCAATGATCATAACAAAGATTCACCCAAGCTTGAACGACCTCTATGGAATATC 832
Query 756 CAAAAACATCAGTGATGATATCTTAAAAAAGCTTAATGGCACTGTTGTGTCTCTCGAAGA 815
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 833 CAAAAACATCAGTGATGATATCTTAAAAAAGCTTAATGGCACTGTTGTGTCTCTGGAAGA 892
Query 816 GGAAAAACACAAGCGCCTTGAAAAGCTTCACCATCTTGGTAGAGCTTTATCGGACTTGTG 875
|||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 893 GGAAAAGCACAAGCGCCTTGAAAAGCTTCACCATCTTGGTAGAGCTTTATCGAACCTGTG 952
Query 876 GGATCTGATGGATGCATCTTATGAAGATCGTCAAAAGTTTTCTCACGTCATTGATTTACT 935
| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 953 GAATCTGATGGATGCATCTTATGAAGATCGTCAAAAGTTTTTTCATGTCATTGATTTACT 1012
Query 936 ATCATTTGCACCATCAGACGTGTGTGCTCCTGGCAGCATTACATTAGACATAATTCAACA 995
|| | |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 1013 GTCGTCCGCACCATCAGACGTGTGTGCTCCTGGAAGCATTACATTGGACATAATTCAGCA 1072
Query 996 GGCTGAGGCTGAAGTCAAGAGACTAGATCAACTGAAAGCAAGCAGAACCAAAGAACTTTT 1055
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1073 GGCTGAGGCTGAAGTCAAGAGACTAGATCAACTGAAAGCAAGCAGAATCAAAGAACTTTT 1132
Query 1056 CCTCAAGAAGCAAAAGGAACTAGAGGATACATGCAACATATCGCATATGGAAACTCCATC 1115
| |||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 1133 CATCAAGAAGCAAAAGGAACTAGAAGATACGTGCAACATGTCGCATATGGAGACTCCATC 1192
Query 1116 AACCGAAATAGGAAATATAATGAACCTTGTAGACTCCGGAGAAGTTGACCATGTTGACCT 1175
||| ||||| |||||||| | ||||||||||||||| || ||||||||||||||||||||
Sbjct 1193 AACGGAAATGGGAAATATCACGAACCTTGTAGACTCTGGGGAAGTTGACCATGTTGACCT 1252
Query 1176 TCTCGCCGCCATGGATgaaaagatagcaaaagcaaaggaagaagcagcaagtagaaaagg 1235
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1253 TCTAGCCGCCATGGATGAAAAGATAGCAAGAGCAAAGGAAGAAGCAGCAAGTAGAAAAGG 1312
Query 1236 aataattgaaaaagTTGATAGGTGGATGTTGGCAAGTGATGAAGAGCGCTGGCTAGAAGA 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 AATAATTGAAAAAGTTGATAGGTGGATGTTGGCAAGTGATGAAGAGCGCTGGCTAGAAGA 1372
Query 1296 ATATGACCAGGATGAGAATCGGTACTCAGTAAGTAGAAATGCTCATCGAAACCTAAGGAG 1355
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 ATATGACCAGGACGAGAATCGGTACTCAGTAAGTAGAAATGCTCATCGAAACCTAAGGAG 1432
Query 1356 AGCAGAACGGGCACGCATAACAGTCAGCAAAATCACAGGATTAGTGGAATCTATATTGGT 1415
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1433 AGCAGAACGGGCACGCATAACAGTCAGCAAAATCTCAGGATTAGTGGAATCTATATTGGT 1492
Query 1416 CAAGACTAAGAGCTGGGAGGTAGAAAGACAGAAAGTCTTCTTATACAATGAGGTACCTCT 1475
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TAAGGCTAAGAGCTGGGAGGTAGAAAGACAGAAAGTCTTCTTATACAATGAGGTACCTCT 1552
Query 1476 TGTTGCAATGTTGAAAGAATACAATAAGCTGAGGCAGGAAAAAGAAGTGGAGAAGCAAAG 1535
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1553 TGTTGCAATGTTGCAAGAATACAATAAGCTGAGGCAGGAAAAAGAAATGGAGAAGCAAAG 1612
Query 1536 ACTCCGGGAAATGAAGAAGATGGGCATTCCACAACCTGTGGCTGAGCCAGATAGTTTTCA 1595
||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
Sbjct 1613 GCTCCGGGAAATGAAGAAGATGAGCATTCCACAACCTGTGGCTGAGGGAGATAATTTTTA 1672
Query 1596 CATGTCAAGGCCAGCTACCAGCAATCGGCGAATAACAAACCGAAGCATCAATGGTGGA-- 1653
|||| |||||||||||| ||||||| |||||||| |||| |||||||| |||||||||
Sbjct 1673 CATGGCAAGGCCAGCTAGCAGCAATAGGCGAATATCAAATCGAAGCATGAATGGTGGATT 1732
Query 1654 ---A-GT------CCTATAAACCGAAAGTGTTCAGGAGGGTTCAGCAACAATA-CTAGTA 1702
| || ||||||||| |||||| ||||||||| |||| ||| | || | | ||
Sbjct 1733 TGGAAGTGGAAGTCCTATAAACAGAAAGTATTCAGGAGGATTCAACAATACTAACAA-TA 1791
Query 1703 ATTACACAGCACTTGGAACATCTATGAGAAGCGAAAGCAGAAAGA 1747
|||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1792 ATTACACAGCACTTGGTACATCTATAAGAAGAGAAAGCAGAAAGA 1836
> AT1G27921.1 | Symbols: | other RNA | chr1:9728124-9730331 REVERSE
LENGTH=998
Length=998
Score = 185 bits (100), Expect = 1e-45
Identities = 118/127 (93%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 839 AGCTTCACCATCTTGGTAGAGCTTTATCGGACTTGTGGGATCTGATGGATGCATCTTATG 898
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 759 AGCTTCACCATCTTGGTAGAGCTTTATCGAACCTGTGGAATCTGATGGATGCATCTTATG 700
Query 899 AAGATCGTCAAAAGTTTTCTCACGTCATTGATTTACTATCATTTGCACCATCAGACGTGT 958
|||||||||||||||||| ||| |||||||||||||| || | ||||||||||||||||
Sbjct 699 AAGATCGTCAAAAGTTTTTTCATGTCATTGATTTACTGTCGTCCGCACCATCAGACGTGT 640
Query 959 GTGCTCC 965
|||||||
Sbjct 639 GTGCTCC 633
Score = 145 bits (78), Expect = 2e-33
Identities = 82/84 (98%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 757 AAAAACATCAGTGATGATATCTTAAAAAAGCTTAATGGCACTGTTGTGTCTCTCGAAGAG 816
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 998 AAAAACATCAGTGATGATATCTTAAAAAAGCTTAATGGCACTGTTGTGTCTCTGGAAGAG 939
Query 817 GAAAAACACAAGCGCCTTGAAAAG 840
||||| ||||||||||||||||||
Sbjct 938 GAAAAGCACAAGCGCCTTGAAAAG 915
Score = 63.9 bits (34), Expect = 5e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 995 AGGCTGAGGCTGAAGTCAAGAGACTAGATCAACT 1028
||||||||||||||||||||||||||||||||||
Sbjct 585 AGGCTGAGGCTGAAGTCAAGAGACTAGATCAACT 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86395137945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5