BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472993 Length=1747 Score E Sequences producing significant alignments: (Bits) Value AT1G27920.1 | Symbols: MAP65-8 | microtubule-associated protein... 2556 0.0 AT1G27921.1 | Symbols: | other RNA | chr1:9728124-9730331 REVE... 185 1e-45 > AT1G27920.1 | Symbols: MAP65-8 | microtubule-associated protein 65-8 | chr1:9726948-9729848 FORWARD LENGTH=1847 Length=1847 Score = 2556 bits (1384), Expect = 0.0 Identities = 1615/1725 (94%), Gaps = 22/1725 (1%) Strand=Plus/Plus Query 36 AAAAGAAAAGACAACATTGCAGAGCTATCCATCCGAAGATGGGATCCCTTCAGACACCGA 95 ||||||||||| ||||||||||| |||||||||||| ||||| || ||||||||||||| Sbjct 121 AAAAGAAAAGAAAACATTGCAGAATTATCCATCCGAATATGGGTTCGCTTCAGACACCGA 180 Query 96 TAGGAATGAGAAGCTCCTCTTTGTTAGATACATCCTGCGGATATTTGCTCAGAGAGTTAC 155 ||| |||||||||||| || ||||| ||||| |||||||||||||||||||||||||| Sbjct 181 TAGAAATGAGAAGCTCATCGTTGTTGGATACGTCCTGCGGATATTTGCTCAGAGAGTT-- 238 Query 156 AGGCAAGTTTATGATATGGGATGAAGTTGGAGAAGATAAGTTTGAGAGAGAAAAAGTGTT 215 | | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 A--C-AG---ATGATATGGGATGAAGTTGGAGAAGATAAGTTTGAGAGAGAAAAAGTGTT 292 Query 216 GCTTGATATAGAGCAGGAATGTGTAGAGGCTTACCGGAGAAAAGTTGACCAGGCCAATGT 275 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 293 GCTTGATATAGAGCAGGAATGTGTAGAGGCTTACCGGAGAAAAGTTGACCATGCCAATGT 352 Query 276 TTCAAGGTCTCGTCTACATCAAGAGCTGGCAGAAACTGAAGCCGAAGTCACCCATTTTCT 335 ||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 353 TTCGAGGTCTCGTCTACATCAAGAGCTGGCAGAATCTGAAGCCGAACTCACCCATTTTCT 412 Query 336 TTTGTGCCTCGGTGAAAGATCAGTACCTGGAAGGCCGGAGAAAAAGGGAGGAACACTGAG 395 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 413 TTTGTGCCTCGGTGAAAGATCAGTACCTGGAAGACCGGAGAAAAAGGGAGGAACACTGAG 472 Query 396 GGAGCAGCTGGATTCTATTGCGCCTGCACTGCGTGAGATGAGGCAGAGGAAAGATGAGAG 455 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 473 GGAGCAGCTGGATTCTATTGCGCCTGCACTGCGTGAGATGAGGCTTAGGAAAGACGAGAG 532 Query 456 AGTGAAGCAGTTCCGATCTGTCAAAGGGGAAATTCAGAAAATTTCAGCAGAAATCGCAGG 515 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 533 AGTGAAGCAGTTCCGATCTGTCAAAGGGGAAATTCAGAAAATATCAGCAGAAATAGCAGG 592 Query 516 TAAACCAACATATGAAGACTCATCTAGAAAGATAACCATAGATGACAACGATCTTTCTGA 575 || | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 593 TAGATCGACATATGAAGACTCAACTAGAAAGATAACCATAGATGACAACGATCTTTCTAA 652 Query 576 TAAGAAACTCGAGGAATATCAGAACGAACTGCATAGACTCAATGATGAGAAGAATGAGAG 635 ||| ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 653 TAAAAAACTTGAGGAATATCAGAATGAACTGCATAGACTCCATGATGAGAAGAATGAGAG 712 Query 636 ACTACAGAAGGTTGATATATACATATGCGCCATTCGAGATCTATCAGCTACATTGGGAAC 695 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 713 ACTACAGAAGGTTGATATATACATATGCGCCATTCGAGATCTATCAGCAACATTGGGAAC 772 Query 696 AGAAGCATCAATGATCATAACAAAGATTCACCCAAGCCTGAACGACCTCTATGGAATATC 755 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 773 AGAAGCATCAATGATCATAACAAAGATTCACCCAAGCTTGAACGACCTCTATGGAATATC 832 Query 756 CAAAAACATCAGTGATGATATCTTAAAAAAGCTTAATGGCACTGTTGTGTCTCTCGAAGA 815 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 833 CAAAAACATCAGTGATGATATCTTAAAAAAGCTTAATGGCACTGTTGTGTCTCTGGAAGA 892 Query 816 GGAAAAACACAAGCGCCTTGAAAAGCTTCACCATCTTGGTAGAGCTTTATCGGACTTGTG 875 |||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 893 GGAAAAGCACAAGCGCCTTGAAAAGCTTCACCATCTTGGTAGAGCTTTATCGAACCTGTG 952 Query 876 GGATCTGATGGATGCATCTTATGAAGATCGTCAAAAGTTTTCTCACGTCATTGATTTACT 935 | ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 953 GAATCTGATGGATGCATCTTATGAAGATCGTCAAAAGTTTTTTCATGTCATTGATTTACT 1012 Query 936 ATCATTTGCACCATCAGACGTGTGTGCTCCTGGCAGCATTACATTAGACATAATTCAACA 995 || | |||||||||||||||||||||||||| ||||||||||| ||||||||||| || Sbjct 1013 GTCGTCCGCACCATCAGACGTGTGTGCTCCTGGAAGCATTACATTGGACATAATTCAGCA 1072 Query 996 GGCTGAGGCTGAAGTCAAGAGACTAGATCAACTGAAAGCAAGCAGAACCAAAGAACTTTT 1055 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1073 GGCTGAGGCTGAAGTCAAGAGACTAGATCAACTGAAAGCAAGCAGAATCAAAGAACTTTT 1132 Query 1056 CCTCAAGAAGCAAAAGGAACTAGAGGATACATGCAACATATCGCATATGGAAACTCCATC 1115 | |||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 1133 CATCAAGAAGCAAAAGGAACTAGAAGATACGTGCAACATGTCGCATATGGAGACTCCATC 1192 Query 1116 AACCGAAATAGGAAATATAATGAACCTTGTAGACTCCGGAGAAGTTGACCATGTTGACCT 1175 ||| ||||| |||||||| | ||||||||||||||| || |||||||||||||||||||| Sbjct 1193 AACGGAAATGGGAAATATCACGAACCTTGTAGACTCTGGGGAAGTTGACCATGTTGACCT 1252 Query 1176 TCTCGCCGCCATGGATgaaaagatagcaaaagcaaaggaagaagcagcaagtagaaaagg 1235 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1253 TCTAGCCGCCATGGATGAAAAGATAGCAAGAGCAAAGGAAGAAGCAGCAAGTAGAAAAGG 1312 Query 1236 aataattgaaaaagTTGATAGGTGGATGTTGGCAAGTGATGAAGAGCGCTGGCTAGAAGA 1295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1313 AATAATTGAAAAAGTTGATAGGTGGATGTTGGCAAGTGATGAAGAGCGCTGGCTAGAAGA 1372 Query 1296 ATATGACCAGGATGAGAATCGGTACTCAGTAAGTAGAAATGCTCATCGAAACCTAAGGAG 1355 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1373 ATATGACCAGGACGAGAATCGGTACTCAGTAAGTAGAAATGCTCATCGAAACCTAAGGAG 1432 Query 1356 AGCAGAACGGGCACGCATAACAGTCAGCAAAATCACAGGATTAGTGGAATCTATATTGGT 1415 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1433 AGCAGAACGGGCACGCATAACAGTCAGCAAAATCTCAGGATTAGTGGAATCTATATTGGT 1492 Query 1416 CAAGACTAAGAGCTGGGAGGTAGAAAGACAGAAAGTCTTCTTATACAATGAGGTACCTCT 1475 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1493 TAAGGCTAAGAGCTGGGAGGTAGAAAGACAGAAAGTCTTCTTATACAATGAGGTACCTCT 1552 Query 1476 TGTTGCAATGTTGAAAGAATACAATAAGCTGAGGCAGGAAAAAGAAGTGGAGAAGCAAAG 1535 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1553 TGTTGCAATGTTGCAAGAATACAATAAGCTGAGGCAGGAAAAAGAAATGGAGAAGCAAAG 1612 Query 1536 ACTCCGGGAAATGAAGAAGATGGGCATTCCACAACCTGTGGCTGAGCCAGATAGTTTTCA 1595 ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| | Sbjct 1613 GCTCCGGGAAATGAAGAAGATGAGCATTCCACAACCTGTGGCTGAGGGAGATAATTTTTA 1672 Query 1596 CATGTCAAGGCCAGCTACCAGCAATCGGCGAATAACAAACCGAAGCATCAATGGTGGA-- 1653 |||| |||||||||||| ||||||| |||||||| |||| |||||||| ||||||||| Sbjct 1673 CATGGCAAGGCCAGCTAGCAGCAATAGGCGAATATCAAATCGAAGCATGAATGGTGGATT 1732 Query 1654 ---A-GT------CCTATAAACCGAAAGTGTTCAGGAGGGTTCAGCAACAATA-CTAGTA 1702 | || ||||||||| |||||| ||||||||| |||| ||| | || | | || Sbjct 1733 TGGAAGTGGAAGTCCTATAAACAGAAAGTATTCAGGAGGATTCAACAATACTAACAA-TA 1791 Query 1703 ATTACACAGCACTTGGAACATCTATGAGAAGCGAAAGCAGAAAGA 1747 |||||||||||||||| |||||||| ||||| ||||||||||||| Sbjct 1792 ATTACACAGCACTTGGTACATCTATAAGAAGAGAAAGCAGAAAGA 1836 > AT1G27921.1 | Symbols: | other RNA | chr1:9728124-9730331 REVERSE LENGTH=998 Length=998 Score = 185 bits (100), Expect = 1e-45 Identities = 118/127 (93%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 839 AGCTTCACCATCTTGGTAGAGCTTTATCGGACTTGTGGGATCTGATGGATGCATCTTATG 898 ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct 759 AGCTTCACCATCTTGGTAGAGCTTTATCGAACCTGTGGAATCTGATGGATGCATCTTATG 700 Query 899 AAGATCGTCAAAAGTTTTCTCACGTCATTGATTTACTATCATTTGCACCATCAGACGTGT 958 |||||||||||||||||| ||| |||||||||||||| || | |||||||||||||||| Sbjct 699 AAGATCGTCAAAAGTTTTTTCATGTCATTGATTTACTGTCGTCCGCACCATCAGACGTGT 640 Query 959 GTGCTCC 965 ||||||| Sbjct 639 GTGCTCC 633 Score = 145 bits (78), Expect = 2e-33 Identities = 82/84 (98%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 757 AAAAACATCAGTGATGATATCTTAAAAAAGCTTAATGGCACTGTTGTGTCTCTCGAAGAG 816 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 998 AAAAACATCAGTGATGATATCTTAAAAAAGCTTAATGGCACTGTTGTGTCTCTGGAAGAG 939 Query 817 GAAAAACACAAGCGCCTTGAAAAG 840 ||||| |||||||||||||||||| Sbjct 938 GAAAAGCACAAGCGCCTTGAAAAG 915 Score = 63.9 bits (34), Expect = 5e-09 Identities = 34/34 (100%), Gaps = 0/34 (0%) Strand=Plus/Minus Query 995 AGGCTGAGGCTGAAGTCAAGAGACTAGATCAACT 1028 |||||||||||||||||||||||||||||||||| Sbjct 585 AGGCTGAGGCTGAAGTCAAGAGACTAGATCAACT 552 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86395137945 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5