BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472997 Length=1964 Score E Sequences producing significant alignments: (Bits) Value AT1G27960.1 | Symbols: ECT9 | evolutionarily conserved C-termin... 2457 0.0 > AT1G27960.1 | Symbols: ECT9 | evolutionarily conserved C-terminal region 9 | chr1:9742188-9745787 REVERSE LENGTH=1930 Length=1930 Score = 2457 bits (1330), Expect = 0.0 Identities = 1567/1677 (93%), Gaps = 34/1677 (2%) Strand=Plus/Plus Query 296 CACAGAATCATTTCACATTGGAGCTGATACTCCAAGGTCGTACCATTCAC-GTACAGATG 354 |||||||||||||||||||||||||||||||||||||||| |||| |||| | | |||| Sbjct 274 CACAGAATCATTTCACATTGGAGCTGATACTCCAAGGTCGAACCACTCACACT-CGGATG 332 Query 355 TCCCAAGCTTTGAAAAAGTTTCTCCTGGCATGCGAAATGAAATGGTTTACCATGGTAATG 414 | || |||||||| ||||| |||||||||||| |||||||||| |||||||| |||||| Sbjct 333 TTCCTAGCTTTGACAAAGTCTCTCCTGGCATGATAAATGAAATGTTTTACCATAGTAATG 392 Query 415 GTGTACCATCAGATTTTCAGAGATCATCTCTTTCTACCAGAAATCAATCATCACTGCAGC 474 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 393 GTGTACCATCAGATTTTCAGAGGTCATCTCTTTCTACCAGAAATCAATCATCACTGCAGC 452 Query 475 ATTATGGCGACCTCTATGCTGATGATTCAAGACATTTCGTTCCTTTTGACTTATTAAATG 534 |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| Sbjct 453 ATTATGGCGACCTCTATGCTGATGATTCAAGATATTTCGTTCCTTTTCACTTATCAAATC 512 Query 535 AGCAGTATCCAAACCCTGAACATATTCATCTTTCTCCGGAGTTTCACATGTTCCAGGCGA 594 |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 513 AGCAGTATCCAACCCCTGAAGATATTCATCTTTCTCCGGAGTTTCACATGTTTCAGGCGA 572 Query 595 ACTCTAGACGTTTTGATAGGCATGTGAATGAGAGAAACAGTAGTGAGACTGATTATGTGA 654 ||||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||| Sbjct 573 ACTCTAGACATTTTGATAGGCATGTGAATGAGAGAAACAGTAGTGAGATTGATAATATGA 632 Query 655 TGCGAGCTAGGGGAAATTTTGGCTTAAGAAATGATATATATGGAGAACCTAGGGGTATGA 714 |||| ||||||||||||| || ||||||| || ||||||||||||||||||||||||||| Sbjct 633 TGCGCGCTAGGGGAAATTCTGTCTTAAGAGATAATATATATGGAGAACCTAGGGGTATGA 692 Query 715 ATCTCAACCCCTTCAGTGGAGAAAACATGTTTCCTCCAATGGCATCTACCGGAACATGTA 774 |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| Sbjct 693 ATCTCAACCCCTTCAGTGGAGAAAACATGTTTCCTCCATTGGCATCTACCAGACCATGTA 752 Query 775 TGAAG-CACCTTGGTTCAGCAGAATTGCCGGCAAATGACTTCAATATGGGTCCAGCACAT 833 || || |||||||||||||||||||||| ||||||||| || |||||||||||||||||| Sbjct 753 TG-AGACACCTTGGTTCAGCAGAATTGCTGGCAAATGATTTTAATATGGGTCCAGCACAT 811 Query 834 GGAGTTTTGCACGATGCTTTTGAATCTGCTGCAAGCTTAAGTTACAGAGAGCAAGCTTAT 893 |||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 812 GGAGGTTTGCATGATGCTTTTGAATCTGCTGCAAACTTAAGTTACAGAGAGCAAGCATAT 871 Query 894 AG-TCAATGCaaaaaaaGCCCTTTCTCTGCTTCTTCTTCTATCCCAACTTGGGAGAATGA 952 | ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 872 -GCTCAATGCAAAAGAAGCCCTTTCTCTGCTTCTTCTTCTAGCCCAACTTGGGAGAATGA 930 Query 953 TTATAACTTGCCACCACTTGATGAAGCAAGAAGTGGAAGCTACAATGACTT-ATGCCACT 1011 ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| Sbjct 931 TTATAACTTGCCACCACTTGATGAAGCAAGAAGTGAAAGCTACAATGACTTCA-GCCACT 989 Query 1012 ACCCTGCCATGCTTGATATGCTTACTGAGAGTAACAGAGGTCCGAGAGCATCGAGGCTAA 1071 |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 990 GCCCTGCCATGCTTGATATGCTTACCGAGAGTAACAGAGGTCCGAGAGCATCCAGGCTAA 1049 Query 1072 ACAGTAAAAGTAAAATGATCACTTATGATCACGTTGATCG---TTGTCAACAAGAATTGC 1128 |||||||||||||||||||| ||||||||| ||||||||| |||||| |||||||||| Sbjct 1050 ACAGTAAAAGTAAAATGATCTCTTATGATCGCGTTGATCGTTTTTGTCAGCAAGAATTGC 1109 Query 1129 TCTCCCAGTTCAGGGACGCAAAGTTCTTCGTTATTAAGTCATATAGCGAGGATAATGTCC 1188 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1110 TCTCCCAATTCAGGGACGCAAAGTTCTTCGTTATTAAGTCATATAGCGAGGATAATGTCC 1169 Query 1189 ACAAGAGCATAAAGTATTGTGTTTGGGCTAGCACTAAAAACGGAAACAAAAAGTTGGATG 1248 |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1170 ACAAGAGCATAAAGCATTGTGTTTGGGCAAGCACTAAAAATGGAAACAAAAAGTTGGATG 1229 Query 1249 CTGCCTATCGTGAAGCGAAGAAAAAAGAAGTGGCATGCCCAGTCTTTCTCTTATTTTCGG 1308 |||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| Sbjct 1230 CTGCCTATCGTGAAGCAAAGAAAAAGGACGTGGCATGCCCAGTCTTTCTCTTGTTTTCGG 1289 Query 1309 TAAATGCCAGTTCACAGTTTTGTGGAGTTGCTGAGATGGTTGGACCGGTTGACTTCAACA 1368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1290 TAAATGCCAGTTCACAGTTTTGTGGAGTTGCTGAGATGGTTGGACCGGTTGACTTCAACA 1349 Query 1369 CAAGTGTAGAATACTGGCAACAGGATAGATGGTCAGGACACTTCCCGGTCCAATGGCTTA 1428 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1350 CAAGTGTAGAGTACTGGCAACAGGATAGATGGTCAGGACACTTCCCGGTCCAATGGCTTA 1409 Query 1429 TTGTCAAAGATGTTCCTAACAGTCTCTTTCGTCACATCATAATTGAAAGCAATGACAATA 1488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1410 TTGTCAAAGATGTTCCTAACAGTCTCTTTCGTCACATCATAATTGAAAGCAATGACAATA 1469 Query 1489 AGCCTGTCACTAACAGTAGAGACACCCAAGAGGTGGGACTGGAACAAGGTATAGAAATGT 1548 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1470 AGCCTGTCACTAACAGTAGAGACACCCAAGAGGTGGGACTGGAAAAAGGTATAGAGATGT 1529 Query 1549 TAGATATATTCATTAGCTGTGAGATGCGTTCTTCGATCCTCGACGACTTTAACTTCTACG 1608 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1530 TAGATATATTCATCAGCTGTGAGATGCGTTCTTCGATCCTCGACGACTTTAACTTCTACG 1589 Query 1609 AAGAGCGACAGAGAGCGATCCAAGACAGAAAAGCCAGACAACGTGCTGTTCTTGAAGCGC 1668 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1590 AAGAGCGACAGATAGCTATCCAAGACAGAAAAGCCAGACAACGTGCTGTTCTTGAATCGC 1649 Query 1669 TCGCACTTTCTGCAACCTCTGTTCCGACACATCCCTCATATTCTCTCCACGACGAATTTG 1728 ||||||||||||||||||||| ||| | |||| || | ||||||||||||| |||| Sbjct 1650 TCGCACTTTCTGCAACCTCTGCTCC-A-ACAT-----AT-T-CTCTCCACGACGATTTTG 1700 Query 1729 TAAGGGAAATGTCCAAGAACTTTGCAGAGGCTTTGGCCTTGCAACACAGACCCAAATAGA 1788 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1701 TAAGGGAAATGTCCAAGCACTTTGCAGAGGCTTTGGCCTTGCAACACAGACCCAAATAGA 1760 Query 1789 CCTCTCTTCTCTGTTAGGACTTGAGATTGGCTGAGGTTTAAATATGGTTTAATACTCTAG 1848 ||||| | |||| |||||||||| ||||||||||||||||| |||||||| | | | Sbjct 1761 CCTCT-T-CTCTTTTAGGACTTGGGATTGGCTGAGGTTTAATTATGGTTT--T--TG--G 1812 Query 1849 ATTTTGTACATTTGATCACGGACTTAAGAAGCATAGGTTGTAAGATAAA-TTCAAGGTTC 1907 |||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||| Sbjct 1813 ATTTTGTACATTTGATAACGTACTTAAGGAGCATAGGTTGTAAGATAAAATTCAAGGTTC 1872 Query 1908 TAAAAGTCGGTATCTAAACCATCTTGACTTAACTATTTGAAAGTTTAGTTTACGACC 1964 |||||||||||||||| ||| |||||||| | | || ||||||||||||| ||||| Sbjct 1873 TAAAAGTCGGTATCTACACCTTCTTGACT-A--T-TT-GAAAGTTTAGTTTTCGACC 1924 Score = 148 bits (80), Expect = 2e-34 Identities = 138/162 (85%), Gaps = 19/162 (12%) Strand=Plus/Plus Query 28 TTCCTCTCTCAAGTCTC-AAGAGATTCTCACTTTGTCTCTTACTTTATCG--TCTC-T-- 81 ||||| | || ||| || ||||||||||| |||| | ||| ||||||||| |||| | Sbjct 55 TTCCT-T-TC-AGTATCAAAGAGATTCTCGCTTT-TGTCTAACTTTATCGTCTCTCTTCC 110 Query 82 TTTTT--CTCCGATTGGCTGA-TTTTTCTATGGCCGCTTCTTACCGAAGCACCGACTGGT 138 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 111 TTTTTGCCTCCGATTGGCTGATTTTTTCTATGGCCGCTTCTTACCGAAGCACCGACTGGT 170 Query 139 TTCCTCCT-C--CTACT---GGTTCATTTACGGGCTTAAATA 174 |||||||| | ||||| ||||||||||||||| |||||| Sbjct 171 TTCCTCCTACTACTACTACTGGTTCATTTACGGGCCTAAATA 212 Score = 76.8 bits (41), Expect = 7e-13 Identities = 43/44 (98%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 1 ACTCCAAAAATCCTCAAAATTCGACAATTCCTCTCTCAAGTCTC 44 ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 ACTCCCAAAATCCTCAAAATTCGACAATTCCTCTCTCAAGTCTC 44 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97288656210 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5