BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472997
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27960.1 | Symbols: ECT9 | evolutionarily conserved C-termin... 2457 0.0
> AT1G27960.1 | Symbols: ECT9 | evolutionarily conserved C-terminal
region 9 | chr1:9742188-9745787 REVERSE LENGTH=1930
Length=1930
Score = 2457 bits (1330), Expect = 0.0
Identities = 1567/1677 (93%), Gaps = 34/1677 (2%)
Strand=Plus/Plus
Query 296 CACAGAATCATTTCACATTGGAGCTGATACTCCAAGGTCGTACCATTCAC-GTACAGATG 354
|||||||||||||||||||||||||||||||||||||||| |||| |||| | | ||||
Sbjct 274 CACAGAATCATTTCACATTGGAGCTGATACTCCAAGGTCGAACCACTCACACT-CGGATG 332
Query 355 TCCCAAGCTTTGAAAAAGTTTCTCCTGGCATGCGAAATGAAATGGTTTACCATGGTAATG 414
| || |||||||| ||||| |||||||||||| |||||||||| |||||||| ||||||
Sbjct 333 TTCCTAGCTTTGACAAAGTCTCTCCTGGCATGATAAATGAAATGTTTTACCATAGTAATG 392
Query 415 GTGTACCATCAGATTTTCAGAGATCATCTCTTTCTACCAGAAATCAATCATCACTGCAGC 474
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 393 GTGTACCATCAGATTTTCAGAGGTCATCTCTTTCTACCAGAAATCAATCATCACTGCAGC 452
Query 475 ATTATGGCGACCTCTATGCTGATGATTCAAGACATTTCGTTCCTTTTGACTTATTAAATG 534
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||
Sbjct 453 ATTATGGCGACCTCTATGCTGATGATTCAAGATATTTCGTTCCTTTTCACTTATCAAATC 512
Query 535 AGCAGTATCCAAACCCTGAACATATTCATCTTTCTCCGGAGTTTCACATGTTCCAGGCGA 594
|||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 513 AGCAGTATCCAACCCCTGAAGATATTCATCTTTCTCCGGAGTTTCACATGTTTCAGGCGA 572
Query 595 ACTCTAGACGTTTTGATAGGCATGTGAATGAGAGAAACAGTAGTGAGACTGATTATGTGA 654
||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 573 ACTCTAGACATTTTGATAGGCATGTGAATGAGAGAAACAGTAGTGAGATTGATAATATGA 632
Query 655 TGCGAGCTAGGGGAAATTTTGGCTTAAGAAATGATATATATGGAGAACCTAGGGGTATGA 714
|||| ||||||||||||| || ||||||| || |||||||||||||||||||||||||||
Sbjct 633 TGCGCGCTAGGGGAAATTCTGTCTTAAGAGATAATATATATGGAGAACCTAGGGGTATGA 692
Query 715 ATCTCAACCCCTTCAGTGGAGAAAACATGTTTCCTCCAATGGCATCTACCGGAACATGTA 774
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 693 ATCTCAACCCCTTCAGTGGAGAAAACATGTTTCCTCCATTGGCATCTACCAGACCATGTA 752
Query 775 TGAAG-CACCTTGGTTCAGCAGAATTGCCGGCAAATGACTTCAATATGGGTCCAGCACAT 833
|| || |||||||||||||||||||||| ||||||||| || ||||||||||||||||||
Sbjct 753 TG-AGACACCTTGGTTCAGCAGAATTGCTGGCAAATGATTTTAATATGGGTCCAGCACAT 811
Query 834 GGAGTTTTGCACGATGCTTTTGAATCTGCTGCAAGCTTAAGTTACAGAGAGCAAGCTTAT 893
|||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 812 GGAGGTTTGCATGATGCTTTTGAATCTGCTGCAAACTTAAGTTACAGAGAGCAAGCATAT 871
Query 894 AG-TCAATGCaaaaaaaGCCCTTTCTCTGCTTCTTCTTCTATCCCAACTTGGGAGAATGA 952
| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 872 -GCTCAATGCAAAAGAAGCCCTTTCTCTGCTTCTTCTTCTAGCCCAACTTGGGAGAATGA 930
Query 953 TTATAACTTGCCACCACTTGATGAAGCAAGAAGTGGAAGCTACAATGACTT-ATGCCACT 1011
||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 931 TTATAACTTGCCACCACTTGATGAAGCAAGAAGTGAAAGCTACAATGACTTCA-GCCACT 989
Query 1012 ACCCTGCCATGCTTGATATGCTTACTGAGAGTAACAGAGGTCCGAGAGCATCGAGGCTAA 1071
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 990 GCCCTGCCATGCTTGATATGCTTACCGAGAGTAACAGAGGTCCGAGAGCATCCAGGCTAA 1049
Query 1072 ACAGTAAAAGTAAAATGATCACTTATGATCACGTTGATCG---TTGTCAACAAGAATTGC 1128
|||||||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||
Sbjct 1050 ACAGTAAAAGTAAAATGATCTCTTATGATCGCGTTGATCGTTTTTGTCAGCAAGAATTGC 1109
Query 1129 TCTCCCAGTTCAGGGACGCAAAGTTCTTCGTTATTAAGTCATATAGCGAGGATAATGTCC 1188
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TCTCCCAATTCAGGGACGCAAAGTTCTTCGTTATTAAGTCATATAGCGAGGATAATGTCC 1169
Query 1189 ACAAGAGCATAAAGTATTGTGTTTGGGCTAGCACTAAAAACGGAAACAAAAAGTTGGATG 1248
|||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1170 ACAAGAGCATAAAGCATTGTGTTTGGGCAAGCACTAAAAATGGAAACAAAAAGTTGGATG 1229
Query 1249 CTGCCTATCGTGAAGCGAAGAAAAAAGAAGTGGCATGCCCAGTCTTTCTCTTATTTTCGG 1308
|||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||
Sbjct 1230 CTGCCTATCGTGAAGCAAAGAAAAAGGACGTGGCATGCCCAGTCTTTCTCTTGTTTTCGG 1289
Query 1309 TAAATGCCAGTTCACAGTTTTGTGGAGTTGCTGAGATGGTTGGACCGGTTGACTTCAACA 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 TAAATGCCAGTTCACAGTTTTGTGGAGTTGCTGAGATGGTTGGACCGGTTGACTTCAACA 1349
Query 1369 CAAGTGTAGAATACTGGCAACAGGATAGATGGTCAGGACACTTCCCGGTCCAATGGCTTA 1428
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 CAAGTGTAGAGTACTGGCAACAGGATAGATGGTCAGGACACTTCCCGGTCCAATGGCTTA 1409
Query 1429 TTGTCAAAGATGTTCCTAACAGTCTCTTTCGTCACATCATAATTGAAAGCAATGACAATA 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 TTGTCAAAGATGTTCCTAACAGTCTCTTTCGTCACATCATAATTGAAAGCAATGACAATA 1469
Query 1489 AGCCTGTCACTAACAGTAGAGACACCCAAGAGGTGGGACTGGAACAAGGTATAGAAATGT 1548
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1470 AGCCTGTCACTAACAGTAGAGACACCCAAGAGGTGGGACTGGAAAAAGGTATAGAGATGT 1529
Query 1549 TAGATATATTCATTAGCTGTGAGATGCGTTCTTCGATCCTCGACGACTTTAACTTCTACG 1608
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 TAGATATATTCATCAGCTGTGAGATGCGTTCTTCGATCCTCGACGACTTTAACTTCTACG 1589
Query 1609 AAGAGCGACAGAGAGCGATCCAAGACAGAAAAGCCAGACAACGTGCTGTTCTTGAAGCGC 1668
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1590 AAGAGCGACAGATAGCTATCCAAGACAGAAAAGCCAGACAACGTGCTGTTCTTGAATCGC 1649
Query 1669 TCGCACTTTCTGCAACCTCTGTTCCGACACATCCCTCATATTCTCTCCACGACGAATTTG 1728
||||||||||||||||||||| ||| | |||| || | ||||||||||||| ||||
Sbjct 1650 TCGCACTTTCTGCAACCTCTGCTCC-A-ACAT-----AT-T-CTCTCCACGACGATTTTG 1700
Query 1729 TAAGGGAAATGTCCAAGAACTTTGCAGAGGCTTTGGCCTTGCAACACAGACCCAAATAGA 1788
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 TAAGGGAAATGTCCAAGCACTTTGCAGAGGCTTTGGCCTTGCAACACAGACCCAAATAGA 1760
Query 1789 CCTCTCTTCTCTGTTAGGACTTGAGATTGGCTGAGGTTTAAATATGGTTTAATACTCTAG 1848
||||| | |||| |||||||||| ||||||||||||||||| |||||||| | | |
Sbjct 1761 CCTCT-T-CTCTTTTAGGACTTGGGATTGGCTGAGGTTTAATTATGGTTT--T--TG--G 1812
Query 1849 ATTTTGTACATTTGATCACGGACTTAAGAAGCATAGGTTGTAAGATAAA-TTCAAGGTTC 1907
|||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 1813 ATTTTGTACATTTGATAACGTACTTAAGGAGCATAGGTTGTAAGATAAAATTCAAGGTTC 1872
Query 1908 TAAAAGTCGGTATCTAAACCATCTTGACTTAACTATTTGAAAGTTTAGTTTACGACC 1964
|||||||||||||||| ||| |||||||| | | || ||||||||||||| |||||
Sbjct 1873 TAAAAGTCGGTATCTACACCTTCTTGACT-A--T-TT-GAAAGTTTAGTTTTCGACC 1924
Score = 148 bits (80), Expect = 2e-34
Identities = 138/162 (85%), Gaps = 19/162 (12%)
Strand=Plus/Plus
Query 28 TTCCTCTCTCAAGTCTC-AAGAGATTCTCACTTTGTCTCTTACTTTATCG--TCTC-T-- 81
||||| | || ||| || ||||||||||| |||| | ||| ||||||||| |||| |
Sbjct 55 TTCCT-T-TC-AGTATCAAAGAGATTCTCGCTTT-TGTCTAACTTTATCGTCTCTCTTCC 110
Query 82 TTTTT--CTCCGATTGGCTGA-TTTTTCTATGGCCGCTTCTTACCGAAGCACCGACTGGT 138
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 111 TTTTTGCCTCCGATTGGCTGATTTTTTCTATGGCCGCTTCTTACCGAAGCACCGACTGGT 170
Query 139 TTCCTCCT-C--CTACT---GGTTCATTTACGGGCTTAAATA 174
|||||||| | ||||| ||||||||||||||| ||||||
Sbjct 171 TTCCTCCTACTACTACTACTGGTTCATTTACGGGCCTAAATA 212
Score = 76.8 bits (41), Expect = 7e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1 ACTCCAAAAATCCTCAAAATTCGACAATTCCTCTCTCAAGTCTC 44
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTCCCAAAATCCTCAAAATTCGACAATTCCTCTCTCAAGTCTC 44
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97288656210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5