BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472998
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27970.2 | Symbols: NTF2B | nuclear transport factor 2B | ch... 616 1e-175
AT1G27310.1 | Symbols: NTF2A | nuclear transport factor 2A | ch... 267 1e-70
> AT1G27970.2 | Symbols: NTF2B | nuclear transport factor 2B |
chr1:9746811-9748467 FORWARD LENGTH=676
Length=676
Score = 616 bits (333), Expect = 1e-175
Identities = 358/370 (97%), Gaps = 1/370 (0%)
Strand=Plus/Plus
Query 64 AATGTCTCAGATGGATCCCGACGCTGTATCTAAGGCCTTCGTCGAACATTACTATTCCAC 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 AATGTCTCAGATGGATCCCGACGCTGTATCTAAGGCCTTCGTCGAACATTACTATTCCAC 169
Query 124 CTTCGACACCAACCGCGTCGGTCTCGCTGGTCTCTACCAGGAAGCTTCTATGCTCACCTT 183
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 170 CTTCGACACCAACCGTGTCGGTCTCGCTGGTCTCTATCAGGAAGCTTCTATGCTCACCTT 229
Query 184 CGAAGGTCAAAAGATCCAAGGAGTCCAAAGCATCGTCGCTAAGCTCACCTCTCTTCCCTT 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 230 CGAAGGTCAAAAGATCCAAGGAGTCCAGAGCATCGTCGCTAAGCTCACCTCTCTTCCTTT 289
Query 244 CCAGCAGTGCAAGCATCACATCTCCACCGTCGATTGTCAGCCTTCTGGTCCCGCTTCCGG 303
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 290 CCAGCAGTGCAAGCATCACATCTCCACCGTTGATTGTCAGCCTTCTGGTCCTGCTTCCGG 349
Query 304 TATGCTCGTTTTCGTCTCCGGTAACCTCCAGCTCGCCGGCGAAGAGCACACTCTCAAGTT 363
|||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||
Sbjct 350 TATGCTCGTTTTCGTCTCCGGTAATCTCCAGCTCGCCGGAGAAGAACACGCTCTCAAGTT 409
Query 364 CAGCCAGATGTTTCACTTGATGCCGACGCCACAAGGAAGCTTTTACGTGTTCAACGATAT 423
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CAGCCAGATGTTTCATTTGATGCCGACGCCACAAGGAAGCTTTTACGTGTTCAACGATAT 469
Query 424 ATTCAGGTTG 433
|||||| |||
Sbjct 470 ATTCAG-TTG 478
> AT1G27310.1 | Symbols: NTF2A | nuclear transport factor 2A |
chr1:9484316-9485896 REVERSE LENGTH=774
Length=774
Score = 267 bits (144), Expect = 1e-70
Identities = 306/382 (80%), Gaps = 19/382 (5%)
Strand=Plus/Plus
Query 72 AGATGGATCCCGACGCTGTAT-CTAAGGCCTTCGTCGAACATTACTATTCCACCTTCGAC 130
|||||||||| |||||||| | | ||||| ||||| || || ||||| |||||||||||
Sbjct 105 AGATGGATCCAGACGCTGT-TGCAAAGGCTTTCGTTGAGCACTACTACTCCACCTTCGAT 163
Query 131 ACCAACCG-CGTCGGTCTCGCTGGTCTCTACCAGGAAGCTTCTATGCTCACCTTCGAAGG 189
| || || | ||| | | | ||| ||||| |||| || ||| | |||||||||||
Sbjct 164 GCAAATCGTCCAGGGT-TGGTTTCTCTATACCAAGAAGGATCCATGTTGACCTTCGAAGG 222
Query 190 TCAAAAGATCCAAGGAG-TC-CA-AAGCATCGTCGCTAAGCTCACCTCTCTTCCC-TTCC 245
|| ||||||| ||| | || || || ||||||||||||||||||| | |||| ||||
Sbjct 223 CCAGAAGATCC-AGG-GCTCTCAGAA-CATCGTCGCTAAGCTCACC-GGCCTCCCTTTCC 278
Query 246 AGCAGTGCAAGCATC-ACATCTCCACCGTCGATTGTCAGCCTTCTGGTCCCGCTTCCGGT 304
||||||| ||||| | ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 279 AGCAGTGTAAGCA-CAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGGTGGT 337
Query 305 ATGCTCGT-TTTCGTCTCCGGTAACCTCCAGCTCGCCGGCGAAGAGCACACTCTCAAGTT 363
|||||||| ||| |||||||| || || |||||||| || ||| | ||| ||||||||||
Sbjct 338 ATGCTCGTCTTT-GTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAAGTT 396
Query 364 CAGCCAGATGTTTCACTTGATGCCGACGCCACAAGGAAGCTTTTACGTGTTCAACGATAT 423
|||||||||||| || ||||| ||| | | |||| || ||||||||||| || ||
Sbjct 397 CAGCCAGATGTTCCATTTGATATCGAATC-AG--GGAAACTACTACGTGTTCAATGACAT 453
Query 424 ATTCAGGTTGAACTACGCCTGA 445
||||||||||||||| ||||||
Sbjct 454 ATTCAGGTTGAACTATGCCTGA 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5