BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473000
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27980.1 | Symbols: DPL1, ATDPL1 | dihydrosphingosine phosph... 2859 0.0
> AT1G27980.1 | Symbols: DPL1, ATDPL1 | dihydrosphingosine phosphate
lyase | chr1:9748737-9752769 FORWARD LENGTH=1861
Length=1861
Score = 2859 bits (1548), Expect = 0.0
Identities = 1746/1842 (95%), Gaps = 11/1842 (1%)
Strand=Plus/Plus
Query 1 TGTCCCAAACGATTCACTTTTTCTCACCATCTCAATCTCCAGAACaaaa-aaaaaaaaaa 59
||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 18 TGTCCCAAACGATTCAC-TTTTCTCACCATCTCAATCTCCAGACCAAAAGAAACAAAAAA 76
Query 60 TGGATTCCTTTTCGTATTCTTCGATGAAATCCATGTTGATTCAAGCTCGTGGCTCGTTAA 119
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 77 TGGATTCTTTTTCATATTCTTCGATGAAATCCATGTTGATTCAAGCTCGTGGCTCGTTGA 136
Query 120 ACTCGCGTTTGTCCGAATTTGAGCCTCTGGTTCTGCTTTTGGTTCCGCTTCTCACCCTGT 179
||||||||||||| || |||||||| ||||||||||| |||||||||||| || | ||||
Sbjct 137 ACTCGCGTTTGTCGGAGTTTGAGCCACTGGTTCTGCTATTGGTTCCGCTTGTCTCTCTGT 196
Query 180 TTCTCGCTCAAATGATCGGATCTGTCTTCGGCGTTGTTCATGATAAAGGTTTGAAAGCGT 239
|||||||||| || ||||||||||| || ||||||||||| || ||||| | ||||| |
Sbjct 197 TTCTCGCTCAGATTATCGGATCTGTGTTTGGCGTTGTTCACGAGAAAGGCCTCAAAGCTT 256
Query 240 GTTTTGTCGGGTTTCTCATGGGTTTCCTCAAAATGATCCCTGGAGTTCAAAATTACATTG 299
|| || | |||||| ||||||| ||||||||||||| ||||||||||| ||||||||||
Sbjct 257 GTCTTATTGGGTTTATCATGGGACTCCTCAAAATGATTCCTGGAGTTCAGAATTACATTG 316
Query 300 ATGCTGAGAAACAAAAGGTTGTTGATCAATTACAATCTGGTAGCAGCTCTAAGAAAAAGA 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 317 ATGCTGAGAAACAAAAGGTTGTTGACCAATTACAATCTGGTAGCAGCTCTAAGAAAAAGA 376
Query 360 ATCGGACTGAAGTATTGCCAGTTAAAGGTCTTGGAGTTGAAGTTCTAGAGAAAATGGAGA 419
|| |||||||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 377 ATAAGACTGAAGTATTGCCAGTAAAAGGTCTAGGAGTTGAAGTTTTAGAGAAAATGGAGA 436
Query 420 ATGAAAAGAAGAATGATGCTATTTGGCAAGGAAAATGCTCTGGCACTGTATACATAGGTG 479
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 ATGAGAAGAGGAATGATGCTATTTGGCAAGGAAAATGCTCTGGCACTGTATACATAGGTG 496
Query 480 GAGGCGAGTCTGCAGGACATTTTGCATTGATAAATCAAGCATGTTCAATGTTTGCACATA 539
||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 497 GAGCCGAGTCTGAAGGACATTTTTCATTGATAAATCAAGCATGTTCAATGTTTGCGCATA 556
Query 540 CCAATCCGTTGCATATAGACGTATTCCAGAGTGTGGTGCGGTTTGAGTCAGAAGTAGTCG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 CCAATCCGTTGCATATAGACGTATTCCAGAGTGTGGTGCGGTTTGAGTCAGAAGTAGTCG 616
Query 600 CAATGACTGCTGCATTACTGGGGAGTAAAGAAACTGTTTCAGGAGGACAAATATGCGGAA 659
||||||||||||| ||||| |||||||||||||| | |||||||| |||||||||||||
Sbjct 617 CAATGACTGCTGCGTTACTTGGGAGTAAAGAAACGGCGTCAGGAGGTCAAATATGCGGAA 676
Query 660 ACATGACATCTGGAGGAACAGAAAGTATAGTGTTGGCTGTGAAGTCATCTCGTGACTATA 719
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 ACATGACGTCTGGAGGAACAGAAAGTATAGTGTTGGCTGTGAAGTCATCTCGTGACTATA 736
Query 720 TGAAGTACAAGAAGGGAATCACACGGCCAGAAATGATTATACCTGAATCGGGTCATTCGG 779
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 737 TGAAGTACAAGAAGGGAATCACACGGCCAGAAATGATTATACCTGAGTCGGGTCATTCGG 796
Query 780 CTTATGATAAGGCGGCTCAGTATTTTAACATCAAGTTGTGGCGAGTTCCAGTAGACAAAG 839
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 797 CTTATGATAAGGCGGCCCAGTATTTTAAAATCAAGTTGTGGCGAGTTCCAGTTGACAAAG 856
Query 840 ACTTTCGAGCTGATGTGAAGGCAACAAGGCGGCATATTAACAAAAACACCATCATGATTG 899
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 857 ACTTCCGAGCTGATGTGAAGGCAACAAGGCGGCATATTAACAGAAACACCATCATGATTG 916
Query 900 TTGGATCAGCACCAGGATTCCCTCATGGCATCATCGATCCTATCGAGGAGCTTGGTCAAC 959
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 917 TTGGATCAGCACCAGGATTCCCTCATGGCATCATTGATCCTATCGAGGAGCTTGGTCAAC 976
Query 960 TGGCTCTTAGCTATGGAATATGCTTTCATGTTGACCTTTGCCTTGGTGGGTTTGTGTTAC 1019
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 977 TGGCTCTTAGCTATGGAATATGCTTTCATGTTGACCTTTGCCTTGGTGGTTTTGTGTTAC 1036
Query 1020 CTTTCGCTCGTAAACTTGGGTACCAGATCCCACCTTTTGATTTTTCTGTACAAGGAGTTA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTTTCGCTCGTAAACTTGGGTACCAGATCCCACCTTTTGATTTTTCTGTACAAGGAGTTA 1096
Query 1080 CTTCAATTTCGGTGGATGTGCATAAATATGGTTTGGCTCCTAAAGGAACTAGTACAGTTC 1139
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 CTTCAATTTCTGTGGACGTGCATAAATATGGTTTGGCTCCTAAAGGAACTAGTACAGTTC 1156
Query 1140 TCTACAGAAATCATGAGATCAGAAAGCACCAATTCGTTGCTGTAACTGAATGGTCAGGAG 1199
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1157 TATATAGAAATCATGAGATCAGAAAGCACCAATTTGTTGCTGTAACTGAATGGTCAGGAG 1216
Query 1200 GTCTATACGTGTCTCCAACTATAGCTGGGAGCAGGCCTGGTTCTTTGGTTGCTGGTGCTT 1259
|||||||||||||||||||||| |||||||| |||||||| |||||||| || |||||||
Sbjct 1217 GTCTATACGTGTCTCCAACTATCGCTGGGAGTAGGCCTGGGTCTTTGGTAGCCGGTGCTT 1276
Query 1260 GGGCTGCAATGATGTCTCTTGGCGAAGAAGGCTACCTACAAAACACAAGCAAGATAATGG 1319
|||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1277 GGGCTGCAATGATGTCGCTCGGCGAAGAAGGTTACCTACAAAACACAAGTAAGATAATGG 1336
Query 1320 AAGCATCAAAGAGACTAGAGGAAGGAGTAAGAGAAATCCATGAACTATTCGTCATTGGAA 1379
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 AAGCATCAAAGAGACTAGAAGAAGGAGTAAGAGAAATCCATGAACTATTCGTCATTGGAA 1396
Query 1380 AGCCAGATATGACAATTGTGGCGTTTGGTTCTAAAGCATTGGATATATTTGAAGTTAATG 1439
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1397 AGCCAGATATGACAATCGTGGCTTTTGGTTCTAAAGCATTGGATATATTTGAAGTTAATG 1456
Query 1440 ACATCATGTCTTCAAAAGGTTGGCATTTGAATGCACTACAGAGACCCAACAGCATTCATA 1499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 ACATCATGTCTTCTAAAGGTTGGCATTTGAATGCACTACAGAGACCCAACAGCATTCATA 1516
Query 1500 TATGTGTAACTCTTCAACACGTCCCTGTAGTCGATGACTTCCTTCGGGATCTGCGTGAAG 1559
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 TATGTATTACTCTTCAACACGTCCCTGTAGTCGATGACTTCCTTCGGGATCTGCGTGAAG 1576
Query 1560 CTGTAGAAACTGTAAAAGCAAACCCAGGACCGATCACTGGAGGCTTGGCTCCAATATATG 1619
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1577 CTGTGGAAACTGTAAAAGCAAACCCAGGACCGATCACGGGAGGCTTGGCTCCAATATATG 1636
Query 1620 GAGCAGCAGGGAAGATGCCAGACCGAGGCATGGTGAATGAGCTTCTGGTTAGTTTCATGG 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 GAGCAGCAGGGAAGATGCCAGACCGAGGCATGGTGAATGAGCTTCTGGTTAGTTTCATGG 1696
Query 1680 ACAGTCAATATTAAGTTTCTTTTTTAAGGTTAAAGCATCATCAAGTGGGTAAATTGATAT 1739
||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||
Sbjct 1697 ACAGTCAATATTAAGTTTCTTG---AAGGTTAAAGCATC-T-A-GTGGGTAAATTGATAT 1750
Query 1740 CACATTTTCAGTTGCAAGA-GCAAAACTTTGTACATTCACAACCACATTGTTTCTTTTGC 1798
||||||| |||||| | || ||||||||||||| |||||||||||||||||||| |||||
Sbjct 1751 CACATTT-CAGTTGGA-GAAGCAAAACTTTGTATATTCACAACCACATTGTTTCGTTTGC 1808
Query 1799 CCTACTAATAAAATTTCATTACAATCTCCATAATAAGCAACT 1840
||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1809 CCTACTAATAAAATTTCATTACAATCTTCATAATAAACAACT 1850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91063788630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5