BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473001
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1303 0.0
> AT1G27990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G52420.1);
Has 86 Blast hits to 86 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9752799-9753952
REVERSE LENGTH=849
Length=849
Score = 1303 bits (705), Expect = 0.0
Identities = 801/848 (94%), Gaps = 4/848 (0%)
Strand=Plus/Plus
Query 1 TCAACTTCATTCTTATCCGTTTGAATCATCATGTCAGGCGTGTCTCTTGCGGTTGGTCCA 60
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TCAACTACATTCTTATCCATTTGAATCATCATGTCAGGCGTGTCTCTTGCGGTTGGTCCA 63
Query 61 AGAAACGACGTGGACAAAACGGCTTCATCCAGTGAGAAGGGACGGTGGTCGGGGATGACG 120
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 64 AGAACCGACGTGGACAAAACGGCGTCATCCAGTGAGAAGGGACGGTGGTCGGGGATGACG 123
Query 121 GCGATAGGAGGTGGCAGTGGCGGTTTGATGGGGTCGCTGAGGGTTATAGAGCTACAGCTA 180
|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 124 GCGATAGGAGGTGGCAGTGGAGGTTTGATGGGGTCGTTAAGGGTTATAGAGCTACAGCTA 183
Query 181 GTCGCGTTCATACTAGTCTTCTCAGCGAGCGGTCTCGTACCGATACTTGACATGCTTTTT 240
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 184 GTCGCGTTCATACTAGTTTTCTCAGCAAGCGGTCTCGTACCAATACTTGACATGCTTTTT 243
Query 241 CCAGCGTTTGCGTCTGTCTATATAATCGCCCTCTCGCGTTTAGCTTTCCCTTCTCACGGC 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CCAGCGTTTGCGTCTATCTATATAATCGCCCTCTCGCGTTTAGCTTTCCCTTCTCACGGC 303
Query 301 GTTTCCACCTCTTCCCCTGAAATCTTCCGCGGCAGCAAACTCTTCAGGATGTACGTGATT 360
||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 304 GTTTCCACCGCTTCCCCCGAAGTCTTCCGCGGCAGCAAACTCTTCAGGTTGTACGTGATT 363
Query 361 TCGGGGACAACGATTGGTCTGTTTTTGCCTTTAGCTTACGTGTTAGGTGGTTTCGCAAGA 420
||||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||
Sbjct 364 TCGGGGACAACGATTGGTCTGTTCTTGCCTCTAGCTTACGTATTAGGTGGTTTTGCAAGA 423
Query 421 GGAGACGATCAAGCGGTAAGATCAGCAACACCACACTTGTTTCTACTGTCGTGCCAAATC 480
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 424 GGAGATGATCATGCGGTAAGATCAGCAACACCACACTTGTTTCTACTGTCGTGTCAAATC 483
Query 481 CTGACAGAAAATGTAATTAGTGGCCTTTCTCTCTTCTCGCCACCGGTAAGAGCTCTCGTG 540
|||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 484 CTGACAGAGAATGTAATAAGTGGCCTTTCTCTGTTCTCGCCACCGGTAAGAGCTCTCGTC 543
Query 541 CCACTGCTCTACACAGTCTGGAGAATCTTTGTCATCATTGGTTGGTCTAAAGATGTCTGG 600
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 544 CCATTGCTCTACACAGTCTGGAGAATCTTTGTCATCATTGGTTGGTCTAAAGATGTTTGG 603
Query 601 CTCAATAAGTCTTTACCAATTAATGCTACACCCAATGTGGTTGCGTGGTTCTGGTTTGGA 660
|||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 604 TTCAACAAGTCTTTACCAATCAATGCTACACCCAATGTGGTTACATGGTTCTGGTTTGGA 663
Query 661 CGGTATTTAGCAATAGCAAACTTAGGCTACTTCGGAGTGAATCTACTCTGTTTCTTGATC 720
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AGGTATTTAGCACTAGCAAACTTAGGCTACTTCGGAGTGAATCTACTCTGTTTCTTGATC 723
Query 721 CCTAGGTTCCTGCCTCGTGCTTTTGA--AATCTACTTCAGAGAAAGAGACGAGATCATGT 778
||||||||||||||||||||||| || ||| |||||||||| |||||||||||| ||
Sbjct 724 CCTAGGTTCCTGCCTCGTGCTTTCGAGCAAT--ACTTCAGAGAGAGAGACGAGATCTTGG 781
Query 779 CGAAAAGCGAAGAAGACAAGCCGGTTCAAGTACCTAGATCAAAACCTTCTGACCACAAAT 838
|||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||
Sbjct 782 CGAAAAGCCAAGAAGACAAGCCAGTTCAAGTTCCTAGATCAAAACCTTCTAACCACAAAT 841
Query 839 CTGATTGA 846
||||||||
Sbjct 842 CTGATTGA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5