BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473005
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28050.1 | Symbols: | B-box type zinc finger protein with C... 2161 0.0
AT2G33500.1 | Symbols: | B-box type zinc finger protein with C... 335 9e-91
> AT1G28050.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr1:9775528-9777810 REVERSE LENGTH=1695
Length=1695
Score = 2161 bits (1170), Expect = 0.0
Identities = 1523/1683 (90%), Gaps = 65/1683 (4%)
Strand=Plus/Plus
Query 29 aaaaaaaaaaaaaaTCCGAAATGGAAAACGTGAGTAATGGATTTGTCATCATTCATTCTC 88
||||||||||| | | | ||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 23 AAAAAAAAAAAGAGTTCAAAATGAAAAACGTGAGAAATGGATTTGTCATCATTC-TTCTC 81
Query 89 ACCGTCCTTAATCTCTG-----AAA----G---TTGATTTCG------A---ATTTT--G 125
|||||||||| |||||| ||| | ||||||||| | ||||| |
Sbjct 82 ACCGTCCTTAGTCTCTGAAAATAAATTCTGATTTTGATTTCGAATTTTAGGGATTTTGAG 141
Query 126 AG-GA---AGTTATG-GCTAGTTCGAAGAGAGTACCGTGCGATTTCTGCGGCGAGAGAAC 180
|| || ||||||| | ||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 142 AGAGAGTCAGTTATGAG-TAGTTCGGAGAGAGTACCGTGCGATTTCTGCGGCGAGCGTAC 200
Query 181 GGCGGTTTTGTTTTGTAGAGCCGATACGGCGAAGCTGTGTTTGCCTTGTGATCAGCACGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 201 GGCGGTTTTGTTTTGTAGAGCCGATACGGCGAAGCTGTGTTTGCCTTGTGATCAGCAAGT 260
Query 241 GCACACGGCGAATCTCTTGTCGAGGAAGCACGTGCGATCTCAGATCTGCGATAATTGTGG 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 261 TCACACGGCGAATCTGTTGTCGAGGAAGCACGTGCGATCTCAGATCTGCGATAATTGCGG 320
Query 301 CAACGAGCCAGTCTCTGTTCGGTGCTTCACCGATAATCTCATTTTGTGTCAGGAGTGTGA 360
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 321 TAACGAGCCAGTCTCTGTTCGGTGTTTCACCGATAATCTGATTTTGTGTCAGGAGTGTGA 380
Query 361 TTGGGATGTTCACGGAAGCTGTTCAGTTTCCGATGCTCATGTTCGATCCGCCGTCGAAGG 420
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 381 TTGGGATGTTCACGGAAGTTGTTCAGTTTCCGATGCTCATGTTCGATCCGCCGTGGAAGG 440
Query 421 TTTTTCCGGTTGTCCATCGGCGTTGGAGCTTGCTGCTTTGTGGGGACTTGATTTGGAACA 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 441 TTTTTCCGGTTGTCCATCGGCGTTGGAGCTTGCTGCTTTATGGGGACTTGATTTGGAGCA 500
Query 481 AGGGAGGAAAGAAGAAGAGAGTCAAGTTCCGATGATGGCGTTGATGATGGAGAATTTTGG 540
|||||||||||| ||||||| ||||||||||||||||||| |||||||||| ||||| ||
Sbjct 501 AGGGAGGAAAGATGAAGAGAATCAAGTTCCGATGATGGCGATGATGATGGATAATTTCGG 560
Query 541 GATGCAGTTGGATTCTTGGGTTTCGGGATCTAACGAATTGATTGTTCCCAGTGATACGAT 600
||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 561 GATGCAGTTGGATTCTTGGGTTTTGGGATCTAATGAATTGATTGTTCCCAGCGATACGAC 620
Query 601 GTTTAAGAA------A-C--GTGGATCTAGTTGTGGGAGGTATAAGCAGGTGTTGTGTAA 651
||||||||| | | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 621 GTTTAAGAAGCGTGGATCTTGTGGATCTAGTTGTGGGAGGTATAAGCAGGTATTGTGTAA 680
Query 652 ACAGCTTGAGGAGTTGCTTAAGAGTGGTGTTGTTGGTGGTGACGATGAAGATGGTGATGG 711
|||||||||||||||||||||||||||||||| |||||||| | || ||||||||| |
Sbjct 681 GCAGCTTGAGGAGTTGCTTAAGAGTGGTGTTGTCGGTGGTGATGGCGATGATGGTGATCG 740
Query 712 TGATCGTGACCGTGACTGTGACCGTGAGGGTGATGGAGATGGAGATGGAGAAGCAGGAGA 771
||| ||||| ||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 741 TGACCGTGATTGTGACCGTGAGGGTGCTTGTGATGGAGATGGAGATGGAGAAGCAGGAGA 800
Query 772 GGGGCTTATGGTTCCGGAGATGTCGGAGAGATTGGAATGGTCAAGAGATGTTGAGGAGAT 831
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 801 GGGGCTTATGGTTCCGGAGATGTCAGAGAGATTGAAATGGTCAAGAGATGTTGAGGAGAT 860
Query 832 CAA---TGCCGGAGGAGTTAAACAG-CAGCCTTTGCAGTGGAATG---CTACTACTAATC 884
||| || |||||||| | || | || ||||||||||| ||||||||||||
Sbjct 861 CAATGGTGGCGGAGGAG--GAGGAGTTAACC--AGCAGTGGAATGCTACTACTACTAATC 916
Query 885 CTAGTGGTGGCCAGAGTTCTCAGATATGGGATTTTAACTTGGGACAGTCACGGGGACCTG 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 CTAGTGGTGGCCAGAGTTCTCAGATATGGGATTTTAACTTGGGACAGTCACGGGGACCTG 976
Query 945 AGGACACTAGTCGAATAGAAGCTGCATATGTAACGAAAGGTGCTG---CTTCATTCACAA 1001
|||| || |||||| | ||||||||||||||| ||||||||||| ||||||||||||
Sbjct 977 AGGATACGAGTCGAGTGGAAGCTGCATATGTAGGGAAAGGTGCTGCTTCTTCATTCACAA 1036
Query 1002 TCAACAACTTTGTTGACCATATGAATGAAACTTGTTCCACTAACGCCAAAGGTGTTAAGG 1061
||||||| ||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 1037 TCAACAATTTTGTTGACCATATGAATGAAACTTGTTCCACTAATGTGAAAGGTGTCAAAG 1096
Query 1062 GGATTTGCAAGGATGACTACAAGCGATCAACTTCAGGCCAGGTACAATCAACAAAATCTG 1121
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1097 AGATTAAAAAGGATGACTACAAGCGATCAACTTCAGGCCAGGTACAACCAACAAAATCTG 1156
Query 1122 AGAGCAACAATCTTCCAATTACCTTTGGCTCCGAGAAAGGTTCGAACTCCTCCAGTGACT 1181
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1157 AGAGCAACAATCGTCCAATTACCTTTGGCTCTGAGAAAGGTTCGAACTCCTCCAGTGACT 1216
Query 1182 TGCATTTCACGGAGCATATTGCTGGAACTAGTTGTAAGACCACAAGACTAGTGGCAACTA 1241
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1217 TGCATTTCACAGAGCATATTGCTGGAACTAGTTGTAAGACCACAAGACTAGTTGCAACTA 1276
Query 1242 AGGCTGATCTGGAGCGGCTGGCTCAGAACAGAGGCA-ACGCAATGCAGCGTTACAAGGAA 1300
|||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 1277 AGGCTGATCTGGAGCGGCTGGCTCAGAACAGAGG-AGATGCAATGCAGCGTTACAAGGAA 1335
Query 1301 AAGAGGAAGACACGGAGATATGATAAGACCATAAGGTATGAATCGAGGAAGGCAAGAGCT 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 AAGAGGAAGACACGGAGATATGATAAGACCATAAGGTATGAATCGAGGAAGGCAAGAGCT 1395
Query 1361 GACACTAGGTTGCGTGTCAGAGGCAGATTTGTGAAAGCTAGTGAAGCTCCTTACCCTTAA 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 GACACTAGGTTGCGTGTCAGAGGCAGATTTGTGAAAGCTAGTGAAGCTCCTTACCCTTAA 1455
Query 1421 ------GTCTCTTCACATAGTTTTCCTTTTAGCTACAAAGTTAGTTACTTTTTCTACTTC 1474
|||||||||||||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 1456 CCTTAAGTCTCTTCACATAGGCTTCCTTTTAGCTACAAACTTAGTTACTTTTTTTACTTC 1515
Query 1475 CACTGCCTGGTAAATGTATAGACGGGTCTTGTTTCATTTGGCCGCCCTTTTCTGtttttt 1534
|||||||| |||||||| |||| ||||| ||||||| ||||||||||| ||||||| |
Sbjct 1516 CACTGCCTCATAAATGTACAGACCGGTCTCGTTTCATCTGGCCGCCCTT--CTGTTTTAT 1573
Query 1535 tGCCTTATCTGGCTCCTTT-ATGTACCTTGGAATCTTATCTAGTTGAAAAAGGATTGTAA 1593
||||||||||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1574 TGCCTTATCTGGC-CCTTTTATGTACCTTGGAATCTTATCTAGTTTAAAAAAGATTGTAA 1632
Query 1594 CCTTCTAGAAAGCAATATTCTGTTGACTGTATATACTTGTCTATCCAAGCATTTTGAAGT 1653
||||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1633 CCTTCTAGAAAACCATATTCTGTTGACAGTATATACATGTCTATCCAAGCATTTTGAAGT 1692
Query 1654 CTC 1656
|||
Sbjct 1693 CTC 1695
> AT2G33500.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr2:14187987-14190254 REVERSE LENGTH=1589
Length=1589
Score = 335 bits (181), Expect = 9e-91
Identities = 277/323 (86%), Gaps = 8/323 (2%)
Strand=Plus/Plus
Query 156 CGTGCG-ATTTCTGCGGCGAGAGAACGGCGGTTTTGTTTTGTAGAGCCGATACGGCGAAG 214
|||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 CGTGTGAATTT-TGCGGCGAGAGAACGGCGGTTCTGTTTTGTAGAGCCGATACGGCGAAG 298
Query 215 CTGTGTTTGCCTTGTGATCAGCACGTGCACACGGCGAATC-TCTTGTCGAGGAAGCACGT 273
|| |||||||||||||| |||||||||||| ||||||| | || | ||||||||||| ||
Sbjct 299 CTTTGTTTGCCTTGTGACCAGCACGTGCACTCGGCGAACCTTC-TCTCGAGGAAGCATGT 357
Query 274 GCGATCTCAGATCTGCGATAATTGTGGCAACGAGCCAGTCTCTGTTCGGTGCTTCACCGA 333
|| ||||||||||| ||||| ||| |||| ||||| || || || || |||||||| ||
Sbjct 358 TCGTTCTCAGATCTGTGATAACTGTAGCAAAGAGCCGGTGTCCGTACGTTGCTTCACAGA 417
Query 334 TAATCTCATTTTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGCTGTTCAGTT-TCCG 392
||||||| | ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 418 TAATCTCGTATTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGCTGTTCC-TCCTCCG 476
Query 393 ATG-CTCATGTTCGATCCGCCGTCGAAGGTTTTTCCGGTTGTCCATCGGCGTTGGAGCTT 451
| | |||| || |||||||| ||||| ||||| |||||||| |||| |||||||||
Sbjct 477 C-GACGCATGAACGCTCCGCCGTGGAAGGGTTTTCAGGTTGTCCTTCGGTTTTGGAGCTT 535
Query 452 GCTGCTTTGTGGGGACTTGATTT 474
|||||| |||||||| | |||||
Sbjct 536 GCTGCTGTGTGGGGAATCGATTT 558
Score = 71.3 bits (38), Expect = 3e-11
Identities = 62/73 (85%), Gaps = 3/73 (4%)
Strand=Plus/Plus
Query 861 TGCAGTGGAATGCTACTACTAATCCTAGTGGTGGCCAGAGTTCTCAGATATGGGATTTTA 920
|||| ||||||| ||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 882 TGCAATGGAATG---CTACTAATCATAGCACTGGCCAGAACACTCAGATATGGGATTTTA 938
Query 921 ACTTGGGACAGTC 933
|||||||||||||
Sbjct 939 ACTTGGGACAGTC 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81826888350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5