BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473006
Length=2479
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28060.1 | Symbols: | Pre-mRNA-splicing factor 3 | chr1:977... 3747 0.0
AT3G55930.1 | Symbols: | Pre-mRNA-splicing factor 3 | chr3:207... 765 0.0
> AT1G28060.1 | Symbols: | Pre-mRNA-splicing factor 3 | chr1:9779138-9782700
FORWARD LENGTH=2604
Length=2604
Score = 3747 bits (2029), Expect = 0.0
Identities = 2342/2490 (94%), Gaps = 34/2490 (1%)
Strand=Plus/Plus
Query 1 AAACCCTAAAATCTGCCATGGATAAGGAGAGATATTCCAGGAGCCACCGTGACGATCGTG 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 AAACCCTAAATTCTGCCATGGATAAGGAGAGATATTCCAGGAGCCACCGTGACGATCGTG 72
Query 61 ATCGAGATTCGAGTCCCGACCATTCTCCACAACGTGAAGGCGGTCGCCGCCGTGACCGCG 120
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 73 ATCGAGATTCGAGTCCCGACCATTCTCCACAACGTGAAGGAGGACGCCGCCGTGACCGCG 132
Query 121 ACGGTGATTCCAAGCGTCGTGATTCAGATCACTACCGTTCATCGAGGCGCGACGATAGGG 180
| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 133 ATGTTGATTCGAAGCGTCGTGATTCAGATCACTACCGTTCATCGAGGCGCGGCGATAGGG 192
Query 181 AAGATGAGAGAGATAGGACCAAGGATAGAGCTCGGGGCAGAGGGGGATCTGTAGATCGAG 240
||||||||||||||||||||||||||||| |||||| |||||||||| ||||
Sbjct 193 AAGATGAGAGAGATAGGACCAAGGATAGA---------AGAGGGAGATCTGTAGAGCGAG 243
Query 241 GCGAGAGAGAAGGGAGTAGAGATAGGGAAAAGCATCACCATgagaggtctcacgaaggaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 244 GCGAGAGAGAAGGGAGTAGAGATAGGGAAAAGCATCACCATGAGAGGTCTCACGAAGGTA 303
Query 301 gtaaagagaaagaatcgaggagcaagaggaaagagagagaggaagagaatggggctaggg 360
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 304 GTAAAGAGAAGGAATCGAGGAGCAAGAGGAAAGATAGAGAGGAAGAGAATGGGGCTAGGG 363
Query 361 atgggaagaagaaATCTAGGTTTTCTGATGGGAATGGTGAGAGGAGGAGCAGGTTTGAGG 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 364 ATGGGAAGAAGAAATCTAGGTTTGCTGATGGGAATGGTGAGAGGAGGAGCAGGTTTGAGG 423
Query 421 ATGTGGCTATGGAAGTTGAGAACAAAAATGGTCAAGTCTCTGTGTCTTCTTCTGAGGCTA 480
|||||||||| ||||||||||||||| ||| ||||||||||| | ||||| |||||
Sbjct 424 ATGTGGCTATTGAAGTTGAGAACAAAGATGCTCAAGTCTCTGAG---GGTTCTGGGGCTA 480
Query 481 TGAATCCAACCAACGGCGTCACGATTGGCGCTTCTTCATATGGTTCTGTTGCATCGGAAG 540
||||||||||| ||||| ||||| || || ||| ||||| ||||| || |||||||||
Sbjct 481 CGAATCCAACCAGTGGCGTTACGATGGGAGCCTCTACATATAGTTCTATTCCATCGGAAG 540
Query 541 CTTCCATG--GCCCCTAGTCAAACACTGCTCACTAAGGTATCTTCGATATCTACAACGGA 598
||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTT-C-TGCTGCCCCTAGTCAAACACTGCTCACTAAGGTATCTTCGATATCTACAACGGA 598
Query 599 TGAAAATAAGGGTAGTATTGTCAGATCTCATGAGGTTCCTGGAAAATCTAGTACAGATGG 658
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGAAAATAAGGCTAGTGTTGTCAGATCTCATGAGGTTCCTGGAAAATCTAGTACAGATGG 658
Query 659 AAGACCATTGTCAACAGCTGGGAAAAGTAGTGCAAACTTGTCTCTTGATTCATCAGCGTT 718
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 AAGACCATTGTCCACAGCTGGGAAAAGTAGTGCAAACTTGCCTCTTGATTCATCAGCGTT 718
Query 719 ---AGCGAAAGCTCA-TAAAGCACTGCAGCTGCAAAAGGGATTGGCTGAAAAATTGAAGA 774
|||||||||| | |||||||| || ||||||||||||||||||| | ||||||||
Sbjct 719 AGCAGCGAAAGCT-AGGAAAGCACTACAATTGCAAAAGGGATTGGCTGATAGATTGAAGA 777
Query 775 ACCTTCCTTCGCTGAAGAAGGTTACTAAGCCAACTTCAGAAGGTAGCCCACACACCAGAG 834
||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 778 ACCTTCCTTTGCTGAAGAAGGCTACTAAGCCAACTTCAGAAGGTAGCCCACATACCAGAG 837
Query 835 TGCCATCATCCG-CTACCACTCCTGCTGCCTCTACAGGCACATCTTCTGCTTCAGCAGTA 893
||||| ||| || ||||||||||||||| ||||||||||||||||| ||||||| || ||
Sbjct 838 TGCCACCAT-CGACTACCACTCCTGCTGTCTCTACAGGCACATCTTTTGCTTCAACATTA 896
Query 894 CCACATACTGGCCTTGCTGGCTTTGGAAGTATTTCCAACATTCAAGCTGTTAGGCGAGCT 953
|||||||||||||||||||||||||| |||||| |||||||| ||||||||| ||||||
Sbjct 897 CCACATACTGGCCTTGCTGGCTTTGGGAGTATTGCCAACATTGAAGCTGTTAAGCGAGCC 956
Query 954 CAGGAGCTGGCAGCTAGCATGGGATTTCATCAGGATCCCA-TGTTTGGTCCCGCTATCAA 1012
|||||||||||||||| |||||||||||||||||| | | ||| | ||||| ||| ||
Sbjct 957 CAGGAGCTGGCAGCTAATATGGGATTTCATCAGGAT-CGAGAGTTCGCTCCCGTTATTAA 1015
Query 1013 CCTATTTCCAGGGCAGGCACCCTTAGATACGACTGATGCACAGAGACCGGAAAAGCCCCC 1072
|||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 1016 CCTATTTCCAGGACAGGCACCCTCAGATATGACTGTTGCACAGAGACCGGAAAAGCCCCC 1075
Query 1073 TGTTCTGCGCGTGGATGCACTAGGAAGGGAGATAGATGAACACGGAAATGTGATTAGTGT 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TGTTCTGCGCGTGGATGCACTAGGAAGGGAGATAGATGAACACGGAAATGTGATTAGTGT 1135
Query 1133 GACTAAACCAAGCAATCTTAGTACATTGAAGGTTAACATAAACAAACGGAAGAAAGATGC 1192
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1136 GACTAAACCAAGCAATCTTAGTACATTGAAGGTTAACATAAACAAAAAGAAGAAAGATGC 1195
Query 1193 TTTTCAGATTCTTAAACCTCAACTGGAAGCAGATCTAAAAGAAAACCCCCATTTTGACAC 1252
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1196 TTTTCAGATTCTTAAACCTCAACTGGAAGCAGATCTAAAAGAAAACCCCTATTTTGACAC 1255
Query 1253 AAGGATGGGTATTGATGaaaaaaaGATTCTGAGACCTAAACGTATGAGTTTCCAGTTTGT 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AAGGATGGGTATTGATGAAAAAAAGATTCTGAGACCTAAACGTATGAGTTTCCAGTTTGT 1315
Query 1313 TGAGGAAGGTAAATGGACAAGAGATGCTGAGAATTTGAAGTTTAAGAGTCATTTTGGTGA 1372
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1316 TGAGGAAGGTAAATGGACAAGAGATGCTGAAAATTTGAAGTTTAAGAGTCATTTTGGTGA 1375
Query 1373 AGCAAAAGCGAAGGAGCTGAAGGTGAAGCAAGCACAACTGGCAAAGGCAA-CGGATGATA 1431
|||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 1376 AGCAAAAGCGAAGGAGCTGAAGGTGAAGCAAGCACAACTGGCTAAGGCAAACG-ATGATA 1434
Query 1432 TAAATCCAAATTTGATAGAGGTTTCCGAACGTGTCCCGAGAAAAGAGAAGCCCAAGGAGC 1491
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1435 TAAATCCAAATTTGATAGAGGTATCCGAACGTGTCCCGAGAAAAGAGAAGCCCAAGGAGC 1494
Query 1492 CAATTCCAGATGCTGAGTGGTGGGATGCAAATGTCCTCATCAATGGCGAATACGGCGACA 1551
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1495 CAATTCCAGATGTTGAGTGGTGGGATGCAAATGTCCTCACCAATGGCGAATACGGCGAAA 1554
Query 1552 TAGCTGATGGCACCATAACTGATGGCCATCTGAAGATAGAAAAACTTACTCATTACATTG 1611
|| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1555 TAACTGATGGCACCATTACTGAAAGCCATCTGAAGATAGAAAAACTTACTCATTACATTG 1614
Query 1612 AGCATCCGCGTCCCATAGAGCCACCTGCAGAGGCAGCGCCTCCACCACCCCAACCTCTTA 1671
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1615 AGCATCCTCGTCCCATAGAGCCACCTGCAGAGGCAGCTCCTCCACCACCCCAACCTCTTA 1674
Query 1672 AACTGACAAAGAAGGAACAGAAGAAACTGCGAACCCAGAGGCGTCTAGCAAAAGAAAAGG 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 AACTGACAAAGAAGGAACAGAAGAAACTGCGAACCCAGAGGCGTCTAGCAAAAGAAAAGG 1734
Query 1732 AGAAACAGGAGATGATCAGACAAGGGTTGCTGGAACCACCAAAGGCAAAGGTGAAGATGA 1791
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1735 AGAAACAGGAGATGATCAGACAAGGGTTGCTGGAACCACCAAAAGCAAAGGTGAAGATGA 1794
Query 1792 GTAACTTAATGAAGGTTCTTGGGTCTGAAGCGACCCAAGACCCAACCAAGCTTGAAAAAG 1851
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1795 GCAACTTAATGAAGGTTCTTGGTTCTGAAGCGACCCAAGACCCAACAAAGCTTGAAAAAG 1854
Query 1852 AGATCCGCACCGCAGCTGCGGAGCGTGAACAGGCTCATACGGACAGGAATGCCGCCCGGA 1911
|||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct 1855 AGATCCGCACAGCAGCTGCTGAGCGTGAACAGGCTCATACAGATAGGAATGCTGCCCGGA 1914
Query 1912 AACTAACCCCTGCAGAGAAACGTGAGAAGAAAGAGAGGAAGCTTTTCGATGATCCAACAA 1971
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 AGCTAACTCCTGCAGAGAAACGTGAGAAGAAAGAGAGGAAGCTTTTCGATGATCCAACAA 1974
Query 1972 CGGTTGAGACAATTGTCTCGGTATACAAGATCAAAAAGCTATCGCATCCTAAAACAAGAT 2031
|||||||||| ||||| ||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct 1975 CGGTTGAGACGATTGTGTCGGTGTACAAGATCAAAAAGTTATCGCACCCTAAAACAAGAT 2034
Query 2032 TCAAAGTGGAGATGAATGCAAGAGAGAACAGATTAACAGGGTGTAGTGTGATGACGGAGG 2091
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2035 TCAAAGTGGAGATGAATGCAAGAGAGAACAGATTAACAGGGTGTAGTGTGATGACGGATG 2094
Query 2092 GAATGAGTGTGGTTGTGGTTGAGGGCAAGAGCAAAGCGATAAAGAGATACGGGAAGCTGA 2151
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 AAATGAGTGTGGTTGTGGTTGAGGGCAAGAGCAAAGCGATAAAGAGATACGGGAAGCTGA 2154
Query 2152 TGCTGAAGCGAATAAACTGGCaagaggcagagaagaaggatgagaatgaagatgaggaag 2211
|| ||||||||||||||||| |||||||||||| |||||| | ||||||||| |||||||
Sbjct 2155 TGATGAAGCGAATAAACTGGGAAGAGGCAGAGAGGAAGGAAGGGAATGAAGACGAGGAAG 2214
Query 2212 aagaagaagtgaaTGGCGGAAACAAATGTTGGTTGGTTTGGCAAGGAAGTATTGGGAAAC 2271
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2215 AAGAAG---TGAATGGCGGAAACAAGTGTTGGTTGGTTTGGCAAGGAAGTATTGGGAAAC 2271
Query 2272 CGAGCTTTCATAGGTTTCATGTACATGATTGCGTGACGGAATCCACTGCCAAGAAAGTTT 2331
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2272 CGAGTTTTCATAGGTTTCATGTACACGAATGCGTGACGGAATCCACTGCCAAGAAAGTTT 2331
Query 2332 TCATGGATGCTGGTGTTGTTCACTACTGGGATCTCGCTGTCAATTACTCAGACGACTAAA 2391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2332 TCATGGATGCTGGTGTTGTTCACTACTGGGATCTCGCTGTCAATTACTCAGACGACTAAA 2391
Query 2392 TCCTCT-TGC-TCATATCATCATCATCACACCTTGAAATGCTTTAACTATTTGCACATGT 2449
|||||| | | |||||||||||||||||| | ||||||||| ||||||||||| ||||||
Sbjct 2392 TCCTCTCTCCCTCATATCATCATCATCAC-C-TTGAAATGCGTTAACTATTTGGACATGT 2449
Query 2450 TATTGCACTTGTTTGAACATATATTCCCCT 2479
|||||||||| | |||||||||||||||||
Sbjct 2450 TATTGCACTTCTATGAACATATATTCCCCT 2479
> AT3G55930.1 | Symbols: | Pre-mRNA-splicing factor 3 | chr3:20745382-20746964
REVERSE LENGTH=1314
Length=1314
Score = 765 bits (414), Expect = 0.0
Identities = 701/835 (84%), Gaps = 37/835 (4%)
Strand=Plus/Plus
Query 1558 ATGG-CACCATAACTGATG-GCCATCTGAAGATAGAAA-AACTTACTCATTACATTGAGC 1614
|||| |||||| ||||| | ||||||||| || |||| ||| | | | |||||||
Sbjct 502 ATGGACACCATTACTGA-GAACCATCTGAATAT-GAAAGTTTTTAATTGTCATATTGAGC 559
Query 1615 ATCCGCGTCCCATAGAGCCACCTGCAGAGGCAGCGCCTCCACCACCCCAACCTCTTAAAC 1674
|||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 560 ATCCATTTCCCATAGAGCCACCTGCAGAGGCTGCGTCTCCACCTCCCCAACCTCTTAAAA 619
Query 1675 TGACAAAGAAGGAACAGAAGAAACTGCGAAC-CCAGAGGCGTCTAGCAAAAGAAAAGGAG 1733
|||||||| |||||| ||||||||||||||| | | |||||| | |||||||||| ||||
Sbjct 620 TGACAAAGGAGGAACGGAAGAAACTGCGAACTCTA-AGGCGTGTGGCAAAAGAAATGGAG 678
Query 1734 AAACAGGAGATGATCAGACAAGGGTTGCTGGAACCACCAAAGGCAAAGGTGAAGATGAGT 1793
|||| ||||||||| || ||||| | | ||||||| ||| |||||||||| |||||
Sbjct 679 AAACGGGAGATGATTAGTCAAGGAAGGGTTGAACCACAAAAATCAAAGGTGAAAATGAGC 738
Query 1794 AACTTAATGAAGGTTCTTGGGTCTGAAGCGACCCAAGACCCAACCAAGCTTGAAAAAGAG 1853
||| |||||||||||| || ||||||||| || ||| |||||||||||||||||||||||
Sbjct 739 AACCTAATGAAGGTTCGTGCGTCTGAAGCAACGCAAAACCCAACCAAGCTTGAAAAAGAG 798
Query 1854 ATCCGCACCGCAGCTGCGGAGCGTGAACAGGCTCATACGGACAGGAATGCCGCCCGGAAA 1913
|||||||| | |||||| ||||||||||| ||||| | ||| ||||| | || ||||
Sbjct 799 ATCCGCACAGAAGCTGCTGAGCGTGAACAAGCTCACATGGATAGGAACGTAGCGAGGAAG 858
Query 1914 CTAACCCCTGCAGAGAAACGTGAGAAGAAAGAGAGGAAGCTTTTCGATGATCCAACAAC- 1972
||||| |||||||||||||||||||||||||| ||||||||||| | ||||||||| ||
Sbjct 859 CTAACTCCTGCAGAGAAACGTGAGAAGAAAGAAAGGAAGCTTTTTGGTGATCCAACGACA 918
Query 1973 G--GTTGAGACAATTGTCTCGGTATACAAGATCAA-AA-A-GCTATCGCATCCTAAAACA 2027
| |||||||| ||||| ||||| ||||||||||| || | ||||||| |||| ||||||
Sbjct 919 GTTGTTGAGACGATTGTGTCGGTGTACAAGATCAACAAGAAGCTATCGGATCCGAAAACA 978
Query 2028 AGATTCAAAGTGGAG-ATGAATGCAAGAGAGAACAGATTAACAGGGTGTAGTGTGATGAC 2086
|||||||||||| || |||||||||| | |||||| ||||||||||| |||||||||||
Sbjct 979 AGATTCAAAGTG-AGGATGAATGCAAAACAGAACATATTAACAGGGTTTAGTGTGATGAT 1037
Query 2087 GGAGGGAATGAGTGTGGTTGTGGTTGAGGGCAAGAGCAAAGCGATAAAGAGATACGGGAA 2146
||| ||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| |||
Sbjct 1038 GGATGGAATGAGTGTTGTTGTGGTTGAGGGTAAGAGAAAAGCAATAAATAGGTACGAGAA 1097
Query 2147 GCTGATGCTGAAGCGAATAAACTGGCaagaggcagagaagaaggatgagaatgaagatga 2206
||||||||||||||| ||||||||| |||| |||||||||||||| ||| |||||| |
Sbjct 1098 GCTGATGCTGAAGCGTATAAACTGGGAAGAAGCAGAGAAGAAGGA--AGA-TGAAGA--A 1152
Query 2207 ggaagaagaagaagtgaaTGGCGGAAACAAATGTTGGTTGGTTTGGCAAGGAAGTATTGG 2266
| | ||| | ||| | |||||| ||||| |||||||||||||||||| |||
Sbjct 1153 G-A-GAAT--G--GTG---G----AAACAAGTGTTGTTTGGTTTGGCAAGGAAGTGTTGA 1199
Query 2267 GAAACCGAGCTTTCATAGGTTTCATGTACATGATTGCGTGACGGAATCC-ACTGCCAAGA 2325
||||||||| |||||||||||||||||||| || ||| |||| ||||| | ||||||||
Sbjct 1200 GAAACCGAGTTTTCATAGGTTTCATGTACAAGAGTGCTTGACCAAATCCGA-TGCCAAGA 1258
Query 2326 AAGTTTTCA-TGGATGCTGGTGTTGTTCACTACTGGGATCTCGCTGTCAATTACT 2379
||||||||| || |||||||||||| |||||| |||||||| ||| |||||||||
Sbjct 1259 AAGTTTTCAATG-ATGCTGGTGTTGCTCACTATTGGGATCTTGCTCTCAATTACT 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123009344236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5