BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473007
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28070.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 959 0.0
> AT1G28070.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G33510.1);
Has 85 Blast hits to 77 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9782996-9783998
FORWARD LENGTH=751
Length=751
Score = 959 bits (519), Expect = 0.0
Identities = 647/706 (92%), Gaps = 20/706 (3%)
Strand=Plus/Plus
Query 1 GTTTTCATTCCTT-CAAA-A-C-AT-TC-TTTGTTTCTTCTTCTTTTTCTCCTCTGCTTT 54
||||||||||||| |||| | | || || |||||||||||||||| ||||||||||||||
Sbjct 1 GTTTTCATTCCTTCCAAATATCTATCTCTTTTGTTTCTTCTTCTTCTTCTCCTCTGCTTT 60
Query 55 TGGAAACATTATAGTGATCAGAGGAGATGGCTGATATAACAGAATATCTGGAGAGATCGA 114
||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||||
Sbjct 61 TGGAATCATTATAGTGATAAGAGGAGATGGCGGATATAACAGAATATCTAGAGAGATCGA 120
Query 115 TGCAGAATTGTTCACTGATTGATCGGAGAAGTAGTATCGGAGATGGATATGGTATGAGCG 174
|||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||
Sbjct 121 TGCAGAATTGTTCACTTATTGATCGGAGAAGTAGTATGGGAGATGGATTTGGTATGAGCG 180
Query 175 ATGAACATATCCCGATCTCAGATAGATTTTTGGAGCTCAATTCTCACTTGTCTGTTCCTT 234
|||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 181 ATGAACATATCCCGATCTCAGATAGATTCTTGGAGCTCAGTTCTCACTTCTCTGTTCCTT 240
Query 235 CTCATTTGGAACAGTGTCTTGATCTTAAGACAGGAGAGATCTACTACAGAAGCTGGAATA 294
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 CTCATTTGGAACAGTGTCTTGATCTTAAGACAGGAGAGATTTACTACAGAAGCTGGAATA 300
Query 295 GTGGAATGAGAGTGAAGGAAGATCCGAGAAAATCGGTGAGTCGTGGCAACAATGCAGATC 354
|||||||||||||||| |||||||||||||||||| |||||||||| ||| ||||||| |
Sbjct 301 GTGGAATGAGAGTGAAAGAAGATCCGAGAAAATCGATGAGTCGTGGTAACTATGCAGACC 360
Query 355 AATCCAGTGGAGAATCGTATGGAACAGTGTTTTCATCAGAAGAAGTTAGTTCGTATTATG 414
|||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||
Sbjct 361 AATCCAGTGGTGAATCGTCTGGAACAGTTTTTTCATCAGAAGAAGTTAGCTCGTATTATG 420
Query 415 AAAGCGAAGAGTCTTCATCAGAGTCGTCGCCTTCATCGagaagaaagaatcacaagtacg 474
|||||||||||||||||||||||||||| |||||||| | | ||||| ||||||| | |
Sbjct 421 AAAGCGAAGAGTCTTCATCAGAGTCGTCTCCTTCATC-A-A-GAAAGTATCACAA--A-G 474
Query 475 aggaagaagaagaagaagaTGTTCTTGTGGTAGCTGGTTGCAAAGCTTGTTTCATGTATT 534
||||| |||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 475 AGGAACAAGACGAAGA---TGTTCTTGTGGTAGCTGGTTGCAAAGCTTGTTTAATGTATT 531
Query 535 TCATGGTACCTAAACTCTTAAAGGATTGCCCCAAGTGTGCAACTCAGCTTCTTCACTTCG 594
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct 532 TCATGGTACCTAAACTCTTTAAGGATTGCCCCAAATGTGCAACTCAGCTTCTCCACTTTG 591
Query 595 ATGAACCTCACTCTACTTGATCTCCTTAAACCTAtctttctttgttgttttcttttctca 654
|| ||| ||||||||||| |||||| |||||||||||| |||||| ||| ||||||||
Sbjct 592 ATCAACTTCACTCTACTT---CTCCTTGAACCTATCTTTCGTTGTTGATTT-TTTTCTCA 647
Query 655 ttttcatttttatttttcttcACATAGATTTGTGGTTTGTCTTCTC 700
||| |||||| | ||||||||||||||||||| || ||||||||||
Sbjct 648 TTT-CATTTTCAGTTTTCTTCACATAGATTTGAGGGTTGTCTTCTC 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5