BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473010
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28090.1 | Symbols: | Polynucleotide adenylyltransferase fa... 2678 0.0
> AT1G28090.1 | Symbols: | Polynucleotide adenylyltransferase
family protein | chr1:9795762-9799063 FORWARD LENGTH=1862
Length=1862
Score = 2678 bits (1450), Expect = 0.0
Identities = 1603/1678 (96%), Gaps = 6/1678 (0%)
Strand=Plus/Plus
Query 1 TCCGATCTGTTTAGCTTCTTCTTCTCCGACTCTCGTAATGTCGTGATATGTTCAATAAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 TCCGATCTGTTTAGCTTCTTCTTCTCCGACTCTCGTAATGTCGTGATATGTTCAATAAGC 77
Query 61 TTTCTTCAATGGCGTATGGTTCTTTTGGCGTCTCATCGAAAGCTCTAGTCT-TCTGCCGA 119
||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||
Sbjct 78 TTTCTTCAATGGCGTATGGTTCTTTCGGCGTCTCATCAAAAGCTCTAGTCTAT-TGCCGT 136
Query 120 CCTTGCTATGGCTCCATTAGAGATCTCCCTTTCTCTCTCCGAACATCAACAATTGGTCAT 179
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 137 CCCTGCTATGGCTCCATTAGAGATCTCCCTTTCTCCCTCCGAACGTCAACAATTGGTCAT 196
Query 180 TGCGGCTGTGTTGGAGCTATTGCAGCACCTAGAAATGTCGTGAAACCACGCAAGGAAGAA 239
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 197 TGCGGCTGTGTTGGAGCTATCGCAGCACCTAGAAATGTTGTGAAACCTCGCAAGGAAGAA 256
Query 240 AGTCGTGATTTTAGTGGAGCACGGAGAAGTAATAAGGATAAATCGATGCCGTGGAAGAAG 299
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 257 AGTCGTGATTTTAGTGGAGCACGGGGAAGTAATAAGGATAAATCGATGCCATGGAAGAAG 316
Query 300 TTAGATGCTGATGAATTTGGTATTCAGAGGTCAATGATCCCAGATTCTACACGGATGGTT 359
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 317 TTAGATGCTAATGAATTTGGTATTCAGAGGTCAATGATACCAGATTCTACACGGATGGTT 376
Query 360 CTCAATAAACTTAAGAAAAAAGGATTTCAAGTTTACCTAGTTGGAGGTTGTGTTCGGGAT 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 CTCAATAAACTCAAGAAAAAAGGATTTCAAGTTTACCTAGTTGGAGGTTGTGTTCGGGAT 436
Query 420 CTTATTCTAGATAGAATCCCCAAGGATTTTGATGTTATCACTACAGCTGAACTCAAGGAG 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 437 CTTATTCTAGATAGAATCCCCAAGGATTTTGATGTTATCACTACTGCTGAACTCAAGGAG 496
Query 480 GTACGGAAAGTATTTCCCCGCTGTCAAATTGTTGGAAGACGATTTCCCATATGTCATGTT 539
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 497 GTACGGAAAGTATTTCCCGGCTGTCAAATTGTTGGAAGACGATTTCCAATATGTCATGTT 556
Query 540 TATGTTGATGATATTATCATAGAGGTGTCAAGTTTTAGTACTTCAGCAAGGACTGGTAAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 TATGTTGATGATATTATCATAGAGGTGTCAAGTTTTAGTACTTCAGCAAGGACTGGTAAA 616
Query 600 GCGCCTAGTAAAAACTTGAGAAAGCCTGCGGGCTGCGATGAGCGTGATTATATCCGTTGG 659
||||| | ||||| ||| ||| ||||||||| ||||||||||| |||||||| ||||||
Sbjct 617 GCGCCCAATAAAAGCTTTAGACGGCCTGCGGGATGCGATGAGCGGGATTATATTCGTTGG 676
Query 660 AAGAATTGCTTACAGCGTGATTTTACAGTCAATGGGTTGATGTTTGATCTATCAGAGAAT 719
|||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||
Sbjct 677 AAGAATTGCTTACAGCGTGATTTTACAGTCAACGGGTTGATGTTTGATCCATCGGAGAAT 736
Query 720 GTAGTGTATGACTATATAGGAGGAGTTGAAGATATAAGGAATTCTAAAGTTAGAACAGTA 779
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 737 GTAGTGTATGACTATATAGGAGGAGTTGAAGATTTAAGGAATTCTAAAGTTAGAACAGTA 796
Query 780 TCCGCAGCGAAGCTTTCATTTGTCGAGGATACAGCTCGCATTTTACGTGCAATTAGGATT 839
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TCCGCAGCGAATCTTTCATTTGTCGAGGATACAGCTCGCATTTTACGTGCAATTAGGATT 856
Query 840 GCAGCGAGGTTAGGATTCAGCTTGACTAAAGATGTTGCTATTTCTGTGAAGGAGCTTTCT 899
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 857 GCAGCAAGGTTAGGATTCAGCTTGACTAAAGACGTTGCTATTTCTGTGAAGGAGCTTTCT 916
Query 900 TCTTCATTGCTGAGACTTGACCCTTCAAGGATTCGGATGGAAATCAATTATATGCTGGCA 959
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TCTTCATTACTGAGACTTGACCCTTCAAGGATTCGGATGGAAATCAATTATATGCTGGCA 976
Query 960 TATGGGTCCGCAGAAGCTTCTTTACGGCTGTTATGGAGATTTGGCCTCATGGAAATTCTT 1019
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 977 TATGGGTCCGCAGAAGCTTCTTTACGGTTATTATGGAGATTTGGCCTCATGGAAATTCTT 1036
Query 1020 CTACCGATCCAGGCATCTTATCTTGTTTCCCAAGGCTTCCGGAGGCGTGATGGAAGGTCC 1079
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1037 CTACCTATCCAGGCATCTTATCTTGTTTCCCAAGGGTTCCGGAGGCGTGATGGAAGGTCC 1096
Query 1080 AACATGCTTCTGTCCCTATTTCGCAACCTTGATCGACTTGTAGCACCTGATCGACCATGC 1139
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1097 AACATGCTTCTGTCGCTATTTCGCAACCTTGACCGACTTGTAGCACCTGATCGACCATGC 1156
Query 1140 AACGAGTTCCTCTGGATTGGGATCTTAGCATTCCACAAAGCATTGGTCGATCAGCCTCGG 1199
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1157 AGCGAGTTCCTCTGGATTGGGATCTTAGCATTCCACAAAGCATTAGTCGATCAGCCTCGG 1216
Query 1200 GATCCCACGGTAGTAGCTTCCTTCTGCCTTGCCATCTACAGTGAAGTATCTTTATCAGAA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 GATCCCACGGTAGTAGCTTCCTTCTGCCTTGCCATCTACAGTGAAGTATCTTTATCAGAA 1276
Query 1260 GCCATCGCGATTGCAAGGAGCAACTCCAAACAACACAACTCACACTTCCAAGAACTT-TC 1318
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 1277 GCCATCGCAATTGCAAGGAGCAACTCAAAACAACACAACTCACACTTCCAAGAA-TTGTC 1335
Query 1319 TGGTCATGAAAAAGACACTGCTGACTCAGAGAGCAAATTATCGCAGCAGGTCATAAAATT 1378
||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1336 CAGTCCTGAAAAGGACACTGCTGACTCAGAGAGCAAAATATCGCAGCAGGTCATAAAATT 1395
Query 1379 AGCAGAGTCAATAAGATCAGCTGCGCGAAAATTGAATGATCGAGACTACATAGCTAACGC 1438
||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 1396 AGCAGAGTCTATAAGATCAGCTGCGCGGAAATTGAATAACCGAGACTACATAGCTAACGC 1455
Query 1439 AATGAGCAAATACCCGCAAGCACCAGGCTCTGATATGGTGTTCTTGTCAAGACCTATGTT 1498
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 1456 AATGAGCAAATACCCGCAAGCACCGGGCTCTGATATGGTATTCTTGTCAAGACTTATGTT 1515
Query 1499 GGAGAGAGTGGAGAAAATGTTTGGAAGTGTGAGAAGAAAGAG-AAACCAAGAGACAGAGG 1557
||||||||| |||||||||||||||| |||||||||||| || ||||||||||| ||| |
Sbjct 1516 GGAGAGAGTAGAGAAAATGTTTGGAAATGTGAGAAGAAA-AGGAAACCAAGAGAGAGATG 1574
Query 1558 ATGTTCCAAGTTTAGAGCGTAGGATAAACTACAAGTCTCTTGCTCTTGGAGACTTTCACG 1617
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1575 ATGTCCCAAGTTTAGAGCGTAGGATAAACTACAAGTCTCTTGCCCTTGGAGACTTTCATG 1634
Query 1618 AGACACGTCGTGTTTTTGCTCGGATTGTTTTTGATACCATTTATCCTCCGACTTAAAA 1675
|||||||||||||||||||| ||||||| |||||||||||||| |||| | | |||||
Sbjct 1635 AGACACGTCGTGTTTTTGCTAGGATTGTCTTTGATACCATTTACCCTCTGGCCTAAAA 1692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83081901975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5