BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473017
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28110.1 | Symbols: SCPL45 | serine carboxypeptidase-like 45... 2344 0.0
AT2G33530.1 | Symbols: scpl46 | serine carboxypeptidase-like 46... 1393 0.0
AT1G28100.4 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 337 3e-91
> AT1G28110.1 | Symbols: SCPL45 | serine carboxypeptidase-like
45 | chr1:9803865-9806896 REVERSE LENGTH=1738
Length=1738
Score = 2344 bits (1269), Expect = 0.0
Identities = 1407/1474 (95%), Gaps = 8/1474 (1%)
Strand=Plus/Plus
Query 1 CATCACTTGTCTCCTCTTC-CTTCTTCTCAAAACCAAACACAACAAGAAGTGACATCATG 59
||||||| ||||||||||| ||||||||| ||||||||||| | |||||||||||||||
Sbjct 11 CATCACTAGTCTCCTCTTCACTTCTTCTC-AAACCAAACAC--CGAGAAGTGACATCATG 67
Query 60 TCTCCTCCTCTCCAATGGCTCACAATCTCCTTTGCTCTAATTCTCTTCCACTCTCTTATG 119
| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| | |
Sbjct 68 --T-CTCCTCTCCAATGGCTCACAATCTCTTTTGCTCTAATTATCTTCCACTCTCTCACG 124
Query 120 GTCTCCTCTAGTGTTCTGTCCCACTCCGATCGGGTCACCCGTTTACCCGGTCAACCCCGG 179
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 125 GTCTCCTCTAGTGTTCTGTCCCACTCAGATCGAGTCACCCGTTTACCCGGTCAACCCCGG 184
Query 180 GTCGGATTCCAGCAATACTCCGGTTATGTCACTGTCGACGACAAGAAACAGAGAGCCCTG 239
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 185 GTCGGATTTCAGCAATACTCCGGTTATGTCACTGTCGACGACAAGAAACAGAGAGCTCTG 244
Query 240 TTTTACTACTTCGCCGAGGCAGAAACCAATCCATCCTCTAAACCTCTCGTCCTCTGGCTC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TTTTACTACTTCGCCGAGGCAGAAACCAATCCATCCTCTAAACCTCTCGTCCTCTGGCTC 304
Query 300 AATGGAGGACCTGGATGTTCATCTTTGGGTGTTGGTGCATTCTCAGAGAATGGACCATTT 359
||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 305 AATGGAGGACCTGGATGTTCATCTTTGGGCGTTGGGGCATTCTCAGAAAACGGACCATTT 364
Query 360 AGACCAAAAGGACCAATCTTGGTCAAGAATCAACATAGCTGGAACCAAGAGGCTAATATG 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 365 AGACCAAAAGGACCAATCTTGGTCAAGAATCAGCATAGCTGGAACCAAGAGGCTAATATG 424
Query 420 TTGTATTTAGAGACACCTGTTGGAGTTGGATTCTCTTATTCAACTCAAAGCTCCCATTAT 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TTGTATCTAGAGACACCTGTTGGAGTTGGATTCTCTTATTCAACTCAAAGCTCCCATTAT 484
Query 480 GAGGGTGTTAATGACAAGATCACTGCAAGAGACAATCTTGTGTTCTTGCAAAGATGGTTC 539
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 485 GAGGGTGTTAATGATAAGATCACTGCAAGAGACAACCTTGTGTTCTTGCAAAGATGGTTT 544
Query 540 CTCAAATTCCCTCATTATCTCAATCGAAGTCTCTTCATCACTGGTGAAAGCTATGCTGGC 599
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 545 CTCAAATTCCCTCATTACCTCAATCGAAGTCTCTTCATCACTGGTGAAAGTTATGCTGGC 604
Query 600 CATTATGTTCCTCAACTAGCTCAGCTTATGATTCAGTACAACAAGAAGCATCATTTGTTC 659
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 605 CATTATGTTCCTCAACTAGCTGAGCTTATGATTCAGTACAACAAGAAGCACCATTTGTTC 664
Query 660 AATCTGAGAGGAATTGCTATTGGCAACCCGGTTTTGGAGTTTGCAACGGATTTCAATTCG 719
|||||||||||||||||||||||||| || |||||||||||||| || |||||||| |||
Sbjct 665 AATCTGAGAGGAATTGCTATTGGCAATCCAGTTTTGGAGTTTGCGACAGATTTCAACTCG 724
Query 720 CGCGCTGAGTACTTCTGGTCTCATGGCTTGATATCTGATTCGACTTACAAAATGTTCACA 779
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 725 CGAGCTGAGTACTTCTGGTCTCATGGCTTGATATCGGATTCGACTTACAAAATGTTCACA 784
Query 780 TCTTACTGTAATTACTCGCGCTATGTGAGTGAGTACTATAGAGGGTCAATGTCTAGTATG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TCTTACTGTAATTACTCGCGCTATGTGAGTGAGTACTATAGAGGGTCAATGTCTAGTATG 844
Query 840 TGCTCTAAAGTGATGAGTCAAGTTAGCACTGAGACAAGTCGGTTTGTCGACAAATATGAT 899
|||||||| |||||||||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct 845 TGCTCTAAGGTGATGAGTCAAGTTAGCACTGAGACGAGTCGATTTGTTGATAAATATGAT 904
Query 900 GTTACTCTCGATGTTTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTAAGCCCCAAC 959
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GTCACTCTCGATGTTTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTAAGCCCCAAT 964
Query 960 CAAGTGGGAGAATCTGTGGATGTTTGTGTCGAAGATGAGACGGTTAACTATCTAAACCGA 1019
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 965 CAAGTGGGAGAATCTGTGGATGTTTGTGTCGAAGATGAGACGGTCAACTATCTAAACCGA 1024
Query 1020 CGAGATGTGCAGGAAGCTCTTCATGCTCGGCTCATTGGAGTACGTGAATGGACAGTTTGC 1079
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1025 AGAGATGTGCAGGAAGCTCTTCATGCTCGGCTCATAGGAGTACGTGAATGGACAGTTTGC 1084
Query 1080 AGCAATGTGCTTGATTACCAATTGCTTGATGTGGAAATACCAACAATTAATATCGTAGGG 1139
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1085 AGCAATGTGCTTGATTACCAATTGCTTGATGTGGAAATACCAACGATTAATATCGTAGGG 1144
Query 1140 AGCCTTGTTAAAGCAGGAGTTCCAGTTCTTGTCTACAGTGGAGATCAAGATTCTGTGATC 1199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 AGCCTTGTTAAAGCTGGAGTTCCAGTTCTTGTCTACAGTGGAGATCAAGATTCTGTGATC 1204
Query 1200 CCTTTGACCGGAAGTAGAATTTTAGTCAGCAGATTGGCCAAACAATTGGGACTGAGAACA 1259
|| ||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1205 CCGTTGACAGGAAGTAGAACCTTAGTGAGTAGATTGGCCAAACAATTGGGACTGAGAACA 1264
Query 1260 AGTGTACCTTATCGAGTCTGGTTTGCAGGACAACAGGTTGGCGGGTGGACTCAAGTCTAT 1319
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1265 AGTGTACCTTATCGAGTCTGGTTTGCAGGCCAACAGGTTGGAGGATGGACTCAAGTCTAT 1324
Query 1320 GGGAATGTCTTGTCATTTGCAACGGTGCGAGGAGCTTCACACGAGGTCCCATTCTCACAG 1379
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1325 GGAAATGTCTTGTCCTTTGCAACAGTGCGAGGAGCTTCACACGAGGTCCCATTCTCACAG 1384
Query 1380 CCTGAGAGATCACTTGTTCTGTTCAAGGCGTTCTTGGACGGTCATCCTCTTCCTGAAGAA 1439
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1385 CCTGAGAGATCACTTGTCCTGTTCAAGGCGTTCTTGGACGGCCATCCTCTTCCTGAAGAA 1444
Query 1440 TTCTGATATT-TACCATGATTTGTTGAGCTTATG 1472
|||||||||| ||||||||| | |||| ||||||
Sbjct 1445 TTCTGATATTGTACCATGATCTCTTGACCTTATG 1478
Score = 182 bits (98), Expect = 1e-44
Identities = 104/107 (97%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1472 GGGTAAATTACAACAGGAGCTTCTACTTGCATTGTTAAGCATTTGAATTGAAGAGCTATG 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 GGGTAAATTACAACAGGAGCTTCTACTTGCATTGTTAAGCATTTGAATTGAAGAGCTATG 1691
Query 1532 ATTGGTTTCGATAGCATCACGGCTACGCTTAGCCGCCTTTCATTTTC 1578
|||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1692 ATTGGTTTCGATAGCATCACGGCTTTGCTTAGCTGCCTTTCATTTTC 1738
> AT2G33530.1 | Symbols: scpl46 | serine carboxypeptidase-like
46 | chr2:14197646-14200560 REVERSE LENGTH=1642
Length=1642
Score = 1393 bits (754), Expect = 0.0
Identities = 1163/1358 (86%), Gaps = 37/1358 (3%)
Strand=Plus/Plus
Query 133 TTCTGTCCCACTCCGATCGGGTCACCCGTTTACCCGGTCAACCCCGGGTCGGATTCCAGC 192
||||||||| |||||||| ||||||||||||||||||||||||| ||||| || ||||
Sbjct 104 TTCTGTCCCGGGCCGATCGGATCACCCGTTTACCCGGTCAACCCCGAGTCGGGTTTCAGC 163
Query 193 AATACTCCGGTTATGTCACTGTCGACGACAAGAAACAGAGAGCCCTGTTTTACTACTTCG 252
| ||||| |||||||||||| | ||||| |||||||||||||| |||||||||||||| |
Sbjct 164 AGTACTCAGGTTATGTCACTATTGACGAGAAGAAACAGAGAGCTCTGTTTTACTACTTGG 223
Query 253 CCGAGGCAGAAACC-AATCCATCCTCTAAACCTCTCGTCCTCTGGCTCAATGGAGGACCT 311
| || ||||||||| || |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 224 CTGAAGCAGAAACCAAACCCAT-CTCTAAACCTCTCGTTCTCTGGCTCAATGGAGGACCT 282
Query 312 GGATGTTCATCTTTGGGTGTTGGTGCATTCTCAGAGAATGGACCATTTAGACCAAAAGGA 371
||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 283 GGATGTTCATCATTAGGTGTTGGTGCATTCTCTGAGAATGGACCTTTTAGACCAAAGGGA 342
Query 372 CCAATCTTGGTCAAG-AATCAACATAGCTGGAACCAAGAGGCTAATATGTTGTATTTAGA 430
|||||||||| || |||||||| |||||||| ||||||||||||||||||||| | ||
Sbjct 343 TCAATCTTGGT-GAGAAATCAACACAGCTGGAATCAAGAGGCTAATATGTTGTATCTGGA 401
Query 431 GACACCTGTTGGAGTTGGATTCTCTTATTCAACTCAAAGCTCC-CATTATGAGGGTGTTA 489
||||||||||||||||||||| |||||| ||| | | |||||| | |||||||||||| |
Sbjct 402 GACACCTGTTGGAGTTGGATTTTCTTATGCAAATGAGAGCTCCTC-TTATGAGGGTGTGA 460
Query 490 ATGACAAGATCACTGCAAGAGACAATCTTGTGTTCTTGCAAAGATGGTTCCTCAAATTCC 549
|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 461 ATGATAAGATCACTGCAAAAGACAATCTTGTGTTCTTGCAAAAATGGTTCCTCAAATTCC 520
Query 550 CTCATTATCTCAATC-GAAGTCTCTTCATCACTGGTGAAAGCTATGCTGGCCATTATGTT 608
|||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CTCAATATCTCAA-CAGAAGTCTCTTCATCACTGGTGAAAGCTATGCTGGCCATTATGTT 579
Query 609 CCTCAACTAGCTCAGCTTATGATTCAGTACAACAAGAAGCATCA-TTTGTTCAATCTGAG 667
||||| | |||||||||||||||||||||||||||||||| || |||||| ||||| |
Sbjct 580 CCTCAGTTGGCTCAGCTTATGATTCAGTACAACAAGAAGCA-CAATTTGTTTAATCTCAA 638
Query 668 AGGAATTGCTATTGGCAACCCGGTTTTGGAGTTTGCAACGGATTTCAATTCGCGCGCTGA 727
||| |||||||||||||| |||||| ||||||||||||||||||||||||| || || ||
Sbjct 639 AGGCATTGCTATTGGCAATCCGGTTATGGAGTTTGCAACGGATTTCAATTCACGAGCAGA 698
Query 728 GTACTTCTGGTCTCATGGCTTGATATCTGATTCGACTTACAAAATGTTCACATCTTACT- 786
||| ||||||||||| || |||||||| ||| | ||||||||| |||||||||||| ||
Sbjct 699 GTATTTCTGGTCTCACGGGTTGATATCGGATCCAACTTACAAATTGTTCACATCTT-CTT 757
Query 787 GTAATTACTCGCGCTATGTGAGTGAGTACTATAGAGGGTCAATGTCTAGTATGTGCTCTA 846
||||||||||| | | | ||||||||||| ||||||| ||| |||| ||||||||| |||
Sbjct 758 GTAATTACTCGAGATTTTTGAGTGAGTACCATAGAGGATCAGTGTCGAGTATGTGCACTA 817
Query 847 AAGTGATGAGTCAAGTTAGCA-CTGAGACAAGTCGGTTTGTCGACAAATATGATGTTACT 905
||||| | ||||||||| ||| | || |||||| | || | ||||||||||| ||||||
Sbjct 818 AAGTGCTAAGTCAAGTTGGCATC-GAAACAAGTAGATTCATAGACAAATATGACGTTACT 876
Query 906 CTCGATGTTTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTAAGCCC-CAACC--AA 962
|| || || ||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 877 CTTGACGTCTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTTAGCCCTCAACCTCAA 936
Query 963 ---GTGGGAGA-ATCTGTGGATGTTTGTGTCGAAGATGAGACGGTTAACTATCTAAACCG 1018
|||||||| | | |||||||| ||| | |||||||||||||| |||||||| |||||
Sbjct 937 CAAGTGGGAGAGA-CGGTGGATGTGTGTCTAGAAGATGAGACGGTGAACTATCTTAACCG 995
Query 1019 -ACGAGATGTGCAGGAAGCTCTTCATGCTCGGCTCATTGGAG-TACGTGAATGGACAGTT 1076
| |||||||||| ||||||| || |||||||| | ||| | || ||||||| |||
Sbjct 996 GA-GAGATGTGCAAAAAGCTCTCCACGCTCGGCTTGTCGGAACT-CGCAAATGGACTGTT 1053
Query 1077 TGCAGCAATGTGCTTGATTACCAATTGCTTGATGTGGAAATACCAACAATTAATATCGTA 1136
|||||| ||||||| |||||| || | |||||||||||| ||||||| || |||||||||
Sbjct 1054 TGCAGCGATGTGCTGGATTACGAAGTACTTGATGTGGAAGTACCAACGATAAATATCGTA 1113
Query 1137 GGGAGCCTTGTTAAAGCAGGAGTTCCAGTTCTTGTCTACAGTGGAGATCAAGATTCTGTG 1196
|| || ||||||||||| || ||||||||| |||| ||||||||||||||||| ||||||
Sbjct 1114 GGAAGTCTTGTTAAAGCTGGTGTTCCAGTTTTTGTGTACAGTGGAGATCAAGACTCTGTG 1173
Query 1197 ATCCCTTTGACCGGAAGTAGAATTTTAGTCA-GCAGATTGGCCAAACAATTGGGACTGAG 1255
|| || || ||||||||||||| ||||| | || || |||| || | |||||||| ||
Sbjct 1174 ATTCCGTTAACCGGAAGTAGAACATTAGTGAAGC-GACTGGCTGAAGAGTTGGGACTAAG 1232
Query 1256 AACAAGTGTACCTTATCGAGTCTGGTTTGCAGGACAACAGGTTGGCGGGTGGACTCAAGT 1315
||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1233 AACAACCGTGCCTTATCGAGTTTGGTTCGCAGGACAACAGGTTGGTGGGTGGACTCAAGT 1292
Query 1316 CTATGGGAATGTC-TTGTCATTTGCAACGGTGCGAGGAGCTTCACACGAGGTCCCATTCT 1374
|||||||| | ||| | ||||| || ||| ||||||| | |||||||| |||||||
Sbjct 1293 TTATGGGAACA-CATTGGCGTTTGCCACTGTGAGAGGAGCAGCCCACGAGGTACCATTCT 1351
Query 1375 CACAGCCTGAGAGATCACTTGT-TCTGTTCAAGGCGTTCTTGGACGGTCATCCTCTTCCT 1433
| ||||| | |||| | ||||| | |||| || || ||||||| |||| |||||| |||
Sbjct 1352 CGCAGCCCGCGAGAGCGCTTGTGT-TGTTTAAAGCATTCTTGGGTGGTCGTCCTCTCCCT 1410
Query 1434 GAAGAATTCTGATA--TTTACCATGATTTGTTGAGCTT 1469
|||||||||| || |||||||| ||| | ||||||
Sbjct 1411 GAAGAATTCTAATGCGTTTACCAT--TTTCT-GAGCTT 1445
> AT1G28100.4 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; Has
64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria
- 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0;
Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9801082-9804092
FORWARD LENGTH=1391
Length=1391
Score = 337 bits (182), Expect = 3e-91
Identities = 198/206 (96%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 1472 GGGTAAATTACAACAGGAGCTTCTACTTGCATTGTTAAGCATTTGAATTGAAGAGCTATG 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 GGGTAAATTACAACAGGAGCTTCTACTTGCATTGTTAAGCATTTGAATTGAAGAGCTATG 1211
Query 1532 ATTGGTTTCGATAGCATCACGGCTACGCTTAGCCGCCTTTCATTTTCAAGTGACTCTTGT 1591
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1210 ATTGGTTTCGATAGCATCACGGCTTTGCTTAGCTGCCTTTCATTTTCAAGTGACTCTTGT 1151
Query 1592 GATGTGGGATTCTGTTCTGAAAAAATCTCTGTCTCATCTTCCAAAGCCCCTGAGACAACC 1651
|||||| |||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 1150 GATGTGTGATTCTGTTCTGTAAACTTCTCTGTCTCATCTTCCAAAGCCCCTGATACAACC 1091
Query 1652 GCAGGTCTCACCGGCCTCACCCTGCA 1677
||||||||||||||||||||||||||
Sbjct 1090 GCAGGTCTCACCGGCCTCACCCTGCA 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88804764105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5