BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473019
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28120.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ovarian t... 1801 0.0
> AT1G28120.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ovarian
tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase
Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400);
Has 413 Blast hits to 411 proteins in 139 species:
Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83;
Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI
BLink). | chr1:9812959-9815544 REVERSE LENGTH=1380
Length=1380
Score = 1801 bits (975), Expect = 0.0
Identities = 1173/1264 (93%), Gaps = 31/1264 (2%)
Strand=Plus/Plus
Query 18 CAACCCAATCTTTTCTTCAATCGATCTTCGTTTCAGGTAAATCCGCTAATAAGCTAGG-A 76
||| |||||||||||||||||||||||||||||| | | || | |||||||||||| |
Sbjct 117 CAATCCAATCTTTTCTTCAATCGATCTTCGTTTCTGATCAAGCTAATAATAAGCTAGGAA 176
Query 77 -AGAGTTTGGTG-A--AGTGAGGATGCAGAATCAGAATCAGA--AT-CAGGATGAAGCGG 129
||||||| ||| | ||||| |||||||||||||| | | | | ||||||||||||
Sbjct 177 GAGAGTTTAGTGAAGTAGTGAAGATGCAGAATCAGATTGATATGGTGAAGGATGAAGCGG 236
Query 130 AAGTAGCTGCATCGATTTCGGCAATTAAGGGTGAAGAATGGGGAAATTGTTCATCACTCG 189
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 237 AAGTAGCTGCATCGATTTCAGCAATTAAGGGTGAAGAATGGGGAAATTGTTCATCAGT-G 295
Query 190 AAGATGCTTTGGATCAACCATCTTTTCAAGAAGATGAATCTGCTAAAGTTCCTTATGTTG 249
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 296 --GA------AGATCAACCATCTTTTCAAGAAGAAGAAGCTGCTAAAGTTCCTTATGTTG 347
Query 250 GTGATAAGGAACCTCTCTCTAGTTTAGCTGCAGAGTACCAATCAGGGAGTCCCATTTTGC 309
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 348 GTGATAAGGAACCTCTGTCTAGTTTAGCTGCAGAGTATCAATCAGGGAGTCCCATTTTGC 407
Query 310 TCCAGAAGATAAAGATACTGGACAGTCAATATATCGCAATCCGGCGAACAAGAGGCGATG 369
| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 408 TGGAGAAGATTAAGATACTGGACAGTCAATATATCGGAATCCGGCGAACAAGAGGAGATG 467
Query 370 GAAATTGCTTCTTCCGAAGTTTTATGTTCTCTTACCTTGAGCACATTTTGGAATCACAAG 429
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 468 GAAATTGCTTCTTCCGAAGTTTTATGTTCTCTTACCTTGAGCATATATTGGAATCACAAG 527
Query 430 ATCGTGCTGAAGTCGATCGTATCAAGGTCAATGTTGAGAAATGTAGAAAGACTCTGCAAA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 ATCGTGCTGAAGTCGATCGTATCAAGGTCAATGTTGAGAAATGTAGAAAGACTCTGCAAA 587
Query 490 ACTTAGGTTATACAGATTTTACATTTGAGGACTTCTTTGCGCTGTTCCTTGAGCAACTAG 549
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 588 ACTTAGGTTATACAGATTTTACATTTGAGGACTTCTTTGCGTTGTTCCTTGAGCAACTAG 647
Query 550 ATGACATTCTCCAAGGAACTGAGGAGTCTATAAGCTACGATGAGCTGGTTAACAGGAGTA 609
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 648 ATGACATTCTCCAAGGAACTGAAGAGTCTATAAGCTACGATGAGCTGGTTAACAGAAGTA 707
Query 610 GAGATCAGTCAGTCTCAGACTACATTGTAATGTTCTTTAGGTTTGTTACTGCTGGGGATA 669
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 708 GAGATCAGTCAGTCTCAGATTACATTGTAATGTTCTTTAGGTTTGTTACTGCTGGTGATA 767
Query 670 TACGAACGCGTGCAGATTTTTTCGAGCCCTTTATAACAGGCTTATCAAATACAACAGTGG 729
||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 768 TACGAACGCGTGCCGATTTTTTCGAGCCTTTTATAACAGGCTTATCAAATGCAACAGTGG 827
Query 730 ATCAGTTTTGCAAGTCCTCGGTCGAACCAATGGGGGAAGAGAGTGACCATATTCACATAA 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 ATCAGTTTTGCAAGTCCTCGGTCGAACCAATGGGGGAAGAGAGTGACCATATTCACATAA 887
Query 790 CTGCTTTGTCAGACGCGCTCGGTGTTGCAATCCGGGTTGTATATCTTGACCGTAGCTCAT 849
|||||||||| ||||| || |||||||||||||| ||||| |||||||||||||||||||
Sbjct 888 CTGCTTTGTCGGACGCACTTGGTGTTGCAATCCGTGTTGTGTATCTTGACCGTAGCTCAT 947
Query 850 GTGATAATGGAGGCGTCACTGTGAATCATCATGACTTTGTTCCTGTGGGCACTACCAATG 909
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 948 GTGATAGTGGGGGCGTCACTGTGAATCATCATGACTTTGTTCCTGTGGGCATTACCAATG 1007
Query 910 AGAAAGA--A-GAAGCTTCTGCTCCATTTATAACCTTGCTGTATCGTCCAGGCCATTACG 966
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AGAAAGATGAAGAAGCTTCTGCTCCATTTATAACCTTGCTGTATCGTCCAGGCCATTACG 1067
Query 967 ATATCCTCTACCCCAAGCCATCTTGTAAGGTATCAGACAATGTGGGAAAATGATCATTTG 1026
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1068 ATATCCTCTACCCCAAGCCATCTTGTAAGGTATCAGACAATGTGGGGAAATGATCATTTG 1127
Query 1027 ACAAATCGTAAATCGCATTAAGAGATGTTTACAAAAA-CTGTGGTAATATGGATTCATGT 1085
||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct 1128 ACATATCGTAAATCGCATTAGGAGACGTTTACAAAAAACTGTGGTAATATGGATTCATGT 1187
Query 1086 GGATGAAACCATGGAACAATCAACAATTACATAATCTATTTGC-TC--GATTATGATAAA 1142
|||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||
Sbjct 1188 GGATGAAACCATGGAACAATCAACAATTACCCCATCGATTTGCATTTTGATTATGATAAA 1247
Query 1143 AGAACCCTTTTTGCAACATTATAGAATGGACCGTCTCTTTACTTTGATACTGTCTTGTAT 1202
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1248 AGAACCCTTTTTGCAACACTATAGAATGGACCGTCTCTTTACTTTGATATTGCCTTGTAT 1307
Query 1203 TTTTCATGA-T-A-G-TA-T--CCTTCGTGATATTTCTGATGAGCAAGTGGAACCAAAGG 1255
||||||||| | | | || | |||| ||||||||||||||||||||||||| ||||||
Sbjct 1308 TTTTCATGAATCATGATAATATCCTTTATGATATTTCTGATGAGCAAGTGGAATCAAAGG 1367
Query 1256 GTTT 1259
||||
Sbjct 1368 GTTT 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5