BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473020
Length=2165
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28130.1 | Symbols: GH3.17 | Auxin-responsive GH3 family pro... 3384 0.0
AT4G27260.1 | Symbols: GH3.5, WES1 | Auxin-responsive GH3 famil... 82.4 2e-14
> AT1G28130.1 | Symbols: GH3.17 | Auxin-responsive GH3 family protein
| chr1:9825286-9828067 FORWARD LENGTH=2159
Length=2159
Score = 3384 bits (1832), Expect = 0.0
Identities = 2062/2172 (95%), Gaps = 20/2172 (1%)
Strand=Plus/Plus
Query 1 ACCAAAATCCAACCATCAAGAACAGAGAAGAAGTGATTCTCTCAACAACaaaaataaaat 60
||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ACCAAAAACCAACCTTCAAGAACAGAGAAGAAGTGATTCTCTAAACAACAAAAATAAAAT 60
Query 61 aaaaaCTC-TCTTTCTCTATTTTTTCTT--ACTTGAACTCATCATTGCAACACAAACTTA 117
||||||| |||||||||| ||| | || | | | |||||||||||||||||||||||
Sbjct 61 -AAAACTCTTCTTTCTCTA-TTTCTGTTGAAGGT-ACCTCATCATTGCAACACAAACTTA 117
Query 118 AAACTTTGTTTGTGTCTGCTTTCAGACAATGATACCAAGTTACGACCCAAATGATACAGA 177
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AAGCTTTGTTTGTGTCTGCTTTCAGACAATGATACCAAGTTACGACCCAAATGATACAGA 177
Query 178 AGCTGGCCTCAAGCTTCTCGATGATCTGACAACAAATGCAGAGACTATTCAACAACAAGT 237
||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 178 GGCTGGTCTCAAGCTTCTCGAGGATCTGACAACAAATGCAGAGGCTATCCAACAACAAGT 237
Query 238 TCTTCACCAAATACTCTCTCAAAACTCTGGAACTCAATATCTCCGAGCATTTCTCGATGG 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 238 TCTTCACCAAATACTCTCTCAAAACTCTGGAACTCAATATCTCCGAGCATTTCTGGACGG 297
Query 298 AGAATCCGACAAGAATCAACAAAGCTTCAAAAACAAAGTCCCTGTGGTGAATTACGACGA 357
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 298 AGAAGCCGACAAGAATCAACAAAGCTTCAAAAACAAAGTCCCTGTGGTGAATTATGACGA 357
Query 358 CATAAAGCCTTTCATTCAACGAATCGCTGATGGAGAATCATCTGATATCGTCTCTGCTCA 417
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CGTAAAGCCTTTCATTCAACGAATCGCTGATGGAGAATCATCTGATATCGTCTCTGCTCA 417
Query 418 GCCCATCACAGAACTCCTCACTAGCTCGGGGACTTCTGCAGGAAAGCCGAAGTTGATGCC 477
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 GCCCATCACAGAACTCCTCACTAGTTCGGGGACTTCTGCAGGAAAGCCGAAGTTGATGCC 477
Query 478 TTCTACAGCTGAAGAATTGGATAGGAAGACATTTTTCTACAGCATGCTTGTGCCTATCAT 537
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTCTACAGCTGAAGAATTGGAAAGGAAGACATTTTTCTACAGCATGCTTGTGCCTATCAT 537
Query 538 GAACAAATATGTGAATGGGCTAGATGAAGGAAAAGGGATGTATCTTCTATTCATAAAACC 597
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 538 GAACAAATATGTGGATGGGCTAGATGAGGGAAAAGGGATGTATCTTCTATTCATAAAACC 597
Query 598 AGAGATCAAGACTCCTTCAGGTCTAATGGCGCGTCCTGTTTTGACTAGCTACTACAAAAG 657
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 598 AGAGATCAAGACTCCGTCAGGTCTAATGGCCCGTCCTGTTTTGACCAGCTACTACAAAAG 657
Query 658 TCAACATTTTAGGAACAGACCCTTCAACAAGTACAACGTCTACACTAGCCCTGACCAGAC 717
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCAACATTTCAGAAACAGACCATTCAACAAGTACAACGTCTACACTAGCCCTGACCAGAC 717
Query 718 CATTCTTTGTCAAGACAGCAAACAGAGCATGTACTGTCAGCTTCTCTGCGGTTTAGTCCA 777
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 718 CATTCTTTGTCAAGACAGCAAGCAGAGCATGTACTGTCAGCTTCTCTGCGGTCTAGTACA 777
Query 778 GCGATCTCATGTCCTAAGAGTCGGAGCTGTCTTTGCCTCTGCCTTCCTTCGAGCGGTCAA 837
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 778 GCGATCTCATGTCCTAAGAGTCGGAGCTGTCTTTGCCTCTGCCTTTCTTCGAGCAGTCAA 837
Query 838 GTTCTTGGAGGATCATTACAAAGAGCTTTGCGCTGACATTAGAACCGGTACTGTCACTAG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTTCTTGGAGGATCATTACAAAGAGCTTTGCGCTGACATTAGAACCGGTACTGTCACTAG 897
Query 898 CTGGATAACTAACTCATCCTGCAGAGACTCGGTCTTGTCGATCCTTAACGGCCCAAATCA 957
|||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 898 CTGGATCACTGACTCATCCTGCAGAGACTCGGTCTTGTCGATCCTTAATGGCCCAAATCA 957
Query 958 AGAATTGGCTGATGAAATTGAGAGTGAGTGTGCTGAAAAGTCGTGGGAAGGAATCTTGAG 1017
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 958 AGAATTGGCTGATGAAATTGAGAGTGAGTGCGCTGAAAAGTCGTGGGAAGGAATCTTGAG 1017
Query 1018 GAGGATCTGGCCTAAGGCTAAGTACGTTGAGGTGATTGTGACGGGTTCGATGGCTCAATA 1077
|||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1018 GAGGATATGGCCTAAGGCTAAATATGTTGAGGTGATTGTGACTGGTTCGATGGCTCAATA 1077
Query 1078 CATTCCCACACTCGAGTTTTATAGCGGAGGTTTACCATTGGTTTCAACGATGTATGCTTC 1137
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1078 CATTCCGACACTAGAGTTTTATAGCGGAGGTTTACCGTTGGTTTCAACGATGTATGCTTC 1137
Query 1138 CTCTGAGTGTTACTTTGGTATCAACCTCAATCCGTTGTGTGATCCAGCCGATGTTTCCTA 1197
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1138 CTCTGAGTGTTACTTTGGTATCAACCTTAATCCGTTGTGTGATCCTGCCGATGTTTCCTA 1197
Query 1198 CACGCTTCTTCCTAACATGGCTTACTTCGAGTTCTTGCCCGTCGACGACAAATCCCACGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CACGCTTCTTCCTAACATGGCTTACTTCGAGTTCTTGCCCGTCGACGACAAATCCCACGA 1257
Query 1258 AGAGATTCACTTTGCGTCGCATTCCAACACGGATGATGATGATGATGCTCTCAAGGAAGA 1317
||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||
Sbjct 1258 AGAGATTCACTTTGCAACTCACTCCAACACCGATGATGATGATGATGCTCTCAAGGAAGA 1317
Query 1318 TCTTATTGTTGATCTTGTTAACGTCAAAGTCGGTCAATACTACGAAATTGTCATTACTAC 1377
||| || || |||||||||| ||| |||||||||||||||||||||| ||||| |||||
Sbjct 1318 TCTCATCGTCAATCTTGTTAATGTCGAAGTCGGTCAATACTACGAAATCGTCATCACTAC 1377
Query 1378 ATTCACAGGTTTATACAGATACAGAGTTGGCGATATCCTAAAAGTGACAGGTTTCCACAA 1437
|||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1378 ATTCACAGGTTTGTACAGATACAGAGTAGGCGATATTCTAAAAGTGACGGGTTTCCACAA 1437
Query 1438 CAAAGCGCCTCAATTCCGTTTCGTCCAGCGAAGAAACGTTGTACTAAGCATTGACACCGA 1497
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1438 CAAAGCGCCTCAATTCCGTTTCGTGCAGCGAAGAAACGTTGTACTAAGCATCGACACTGA 1497
Query 1498 CAAAACGAGCGAGGAAGATCTACTAAATGCGGTGACACAAGCTAAACTCAACCATCTTCA 1557
|||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1498 CAAAACGAGCGAAGAAGATCTACTAAACGCAGTGACACAAGCTAAACTAAACCATCTTCA 1557
Query 1558 ACACCCTTCAAGCCTCTTGCTCATGGAGTACACAAGCTACGCGGACACGTCATCAATCCC 1617
||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1558 ACATCCTTCAAGCCTCTTGCTCACGGAGTACACAAGCTACGCAGACACGTCATCAATCCC 1617
Query 1618 GGGGCATTACGTGCTCTTCTGGGAGCTAAAGCCACGTCACAGTAACGACCCACCAAAGCT 1677
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1618 AGGGCATTACGTGCTCTTCTGGGAGCTAAAGCCACGTCACAGCAATGACCCACCAAAGCT 1677
Query 1678 AGACGACAAGACAATGGAAGATTGTTGCTCTGAGGTTGAGGATTGTTTGGATTACGTCTA 1737
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TGACGACAAGACAATGGAGGATTGTTGCTCTGAGGTTGAGGATTGTTTGGATTACGTCTA 1737
Query 1738 CAGAAGATGCAGGAACAGAGATAAATCGATTGGACCATTGGAGATAAGAGTGGTGAGTTT 1797
||| |||||||||||||| || || |||||||| ||||||||||||||||||||||||||
Sbjct 1738 CAGGAGATGCAGGAACAGGGACAAGTCGATTGGGCCATTGGAGATAAGAGTGGTGAGTTT 1797
Query 1798 GGGCACGTTTGATTCGTTAATGGATTTTTGTGTCTCACAAGGATCATCTTTGAATCAGTA 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GGGCACGTTTGATTCGTTAATGGATTTTTGTGTCTCACAAGGATCATCTTTGAATCAGTA 1857
Query 1858 TAAGACTCCAAGATGTGTTAAATCTGGAGGAGCTCTTGAGATTCTTGATTCCAGAGTTAT 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 TAAGACTCCAAGATGTGTTAAATCTGGAGGAGCTCTTGAGATTCTTGATTCCAGAGTTAT 1917
Query 1918 TGGGAGGTTCTTCAGTAAGAGAGTTCCTCAATGGGAACCACTTGGTTTAGATTCTTAGAC 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 TGGGAGGTTCTTCAGTAAGAGAGTTCCTCAATGGGAACCACTTGGTTTAGATTCTTAGAC 1977
Query 1978 TTTACTTCttttt-tttAATGTATGATTAAAGTCTTGATTT-A-A-GTATAAGAACTTCA 2033
||||||||||||| ||||||||||||||||||||||||||| | | |||||||| |||||
Sbjct 1978 TTTACTTCTTTTTCTTTAATGTATGATTAAAGTCTTGATTTTATAAGTATAAGATCTTCA 2037
Query 2034 TTTGTTAAGTTGCTAATTGGTGttttttttttttttttAAAGCTTTTGCTCTTTTGTCTC 2093
||||||||||||||||||||||||| ||||||| || | || ||| ||| |||||
Sbjct 2038 TTTGTTAAGTTGCTAATTGGTGTTTCTTTTTTTAATT----G-TTAAGCT-TTT-GTCTC 2090
Query 2094 TTTTGTAACAAATTACTTTCAGCAAAGTCCTCTCATTTTGTGAATGTATACTTTTGTGTC 2153
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 TTTTGTAACAAA---CTTTCAGCAAAGTCCTCTCATTTTGTGAATGTATACTTTTGTGTC 2147
Query 2154 TCTTTCTTTATT 2165
||||||||||||
Sbjct 2148 TCTTTCTTTATT 2159
> AT4G27260.1 | Symbols: GH3.5, WES1 | Auxin-responsive GH3 family
protein | chr4:13653609-13656204 FORWARD LENGTH=2246
Length=2246
Score = 82.4 bits (44), Expect = 2e-14
Identities = 164/220 (75%), Gaps = 16/220 (7%)
Strand=Plus/Plus
Query 1025 TGGCCTAAGGCTAAGTACGTTGAGGTGATTGTGA-CGGGTTCGATGGCTCAATACATTCC 1083
|||||||| | ||||| || || |||||||||| |||| | ||| |||||||||||||
Sbjct 1002 TGGCCTAACACAAAGTATGTGGATGTGATTGTGACCGGG-ACAATGTCTCAATACATTCC 1060
Query 1084 CACACTCGAGTTTTATAGCGGA-GGTTTACCAT-TGGT-TTCAACGATGTATGCTTCCTC 1140
|| | || | || || | || || || | | || | | || ||||||||||||||
Sbjct 1061 AACTTTGGACTACTACAG-TAATGGCTTGCC-TCTTGTCTGC-ACAATGTATGCTTCCTC 1117
Query 1141 TGAGTGTTACTTTGGTATCAACCTCAAT-CCGTTGTGTGATCCA-GCCGATGTTTCCTAC 1198
|||||||||||||||| | || || || || | || | ||| || || || || |||
Sbjct 1118 TGAGTGTTACTTTGGTGTGAATCT-AAGGCCACTCTGCAAACCAAGC-GAGGTCTCTTAC 1175
Query 1199 ACGCTTCTT-CCTAAC-ATGGCTTACTTCGAGTTCTTGCC 1236
||||| | | || | | |||||||| ||||||||||||||
Sbjct 1176 ACGCT-CATACC-ATCCATGGCTTATTTCGAGTTCTTGCC 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107378965755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5