BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473022
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28140.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1548 0.0
AT2G01175.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 361 9e-99
> AT1G28140.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2301, transmembrane
(InterPro:IPR019275); Has 140 Blast hits to 140 proteins in
72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi -
0; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink). | chr1:9832816-9834427 REVERSE LENGTH=1093
Length=1093
Score = 1548 bits (838), Expect = 0.0
Identities = 956/1013 (94%), Gaps = 8/1013 (1%)
Strand=Plus/Plus
Query 1 AAACCGGTACGACCTCTGTGAATTCAATTCGTGACTAATGGCCTCGCGTTTGTTATCGAC 60
||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||
Sbjct 1 AAACCGGTACGACTTCTGTGAATTCGATTCGTGACTTATGGCCTCGCGTTTGCTATCGAC 60
Query 61 GACGACACTCATCACACCGCCGG-TTACTCTCAACAAATCGCCGGCGTGTTTAACGGCGA 119
|||||||||| |||||||||||| ||| | |||||||||||||||||| ||||||||| |
Sbjct 61 GACGACACTCGTCACACCGCCGGCTTA-TTTCAACAAATCGCCGGCGTTTTTAACGGCCA 119
Query 120 GAGTTGGGGTGAGAAGAGGAAGGGTTAACGTTAGGGCTGTGAGCAATAGTTCGCAAGGAG 179
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 120 GAGTTGGGGTGAGAAGAGGAAGGGCTAACGTTAAGGCTGTGAGCAATAGTTCGCAAGGAG 179
Query 180 CCGTCGATGGAACCGTTTACAAAGGTGTTTACGGTCCCTGGACCATTGACCAAGCCGATG 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 CCGTCGATGGAACCGTTTACAAAGGTGTTTACGGTCCTTGGACCATTGACCAAGCCGATG 239
Query 240 TCAAAGAGGTTATTTTGTACAGATCAGGACTAGTAACTGCTGCTGCATCTTTTGTAGCTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCAAAGAGGTTATTTTGTACAGATCAGGACTAGTAACTGCTGCTGCATCTTTTGTAGCTG 299
Query 300 CTTCTTCTGCTGCATTTTTACCAGGAGACTCTTGGTTAACTGAAACAATCAAGCAAAACC 359
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CTTCTTCTGCTGCCTTTTTACCAGGAGACTCTTGGTTAAGTGAAACAATCAAGCAAAACC 359
Query 360 ATGATTTGTTTTACTTTGTTGGTGCTAGTGGTTTGGGGCTATCTCTGTTTCTTATTCATA 419
||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 360 ATGATCTGTTTTACTTTGTTGGTGCTAGTGGTTTGGGGCTATCTCTGTTTCTAATACATA 419
Query 420 TATATGTTACTGAGATTAAGAGGACTCTTCAAGCTTTATGGGCACTTGGTTTTGTTGGTT 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TATATGTTACGGAGATTAAGAGGACTCTTCAAGCTTTATGGGCACTTGGTTTTGTTGGTT 479
Query 480 CGTTGGCTACTTACGCAGCCCTTGCCAGACCAGCTGGTGATAACTTGGTTCATTATGTCG 539
| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 CTTTCGCTACTTACGCAGCCCTTGCTAGACCAGCTGGTGATAACTTGGTTCATTATGTCG 539
Query 540 TTGATCATCCGTCTGCTGTTTGGTTTGTTGGTCCCCTTTTCGCAGCTCTCACTGGGCTTG 599
|||||||||| || ||||||||||||||||||||||| |||||| ||||||| || || |
Sbjct 540 TTGATCATCCATCCGCTGTTTGGTTTGTTGGTCCCCTATTCGCATCTCTCACAGGACTCG 599
Query 600 TTTTTAAAGAAGGTCTCTGCTACGGAAAGCTAGAAGCTGGCCTTCTTACATTCATCATAC 659
|||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTTCAAAGAAGGTCTTTGTTATGGAAAGCTAGAAGCTGGCCTTCTTACATTCATCATAC 659
Query 660 CTTCAGTTCTTCTTGGGCATTTGAGCAGTGTGATGAATGATGAGGTAAAACTGGTGTTGT 719
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 660 CTTCAGTTCTTCTTGGGCATTTGAGTGGTCTGATGAATGATGAGGTAAAACTGGTGTTGC 719
Query 720 TAGGAACATGGATGGCGCTCTTTCTAGTATTTGCTGGAAGAAAATTTACTCAGCCTATTA 779
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 720 TAGGAACATGGATGGCTCTCTTTCTAGTATTTGCTGGAAGAAAGTTTACTCAGCCTATTA 779
Query 780 AGGATGATATCGGAGATAAATCTGTTTTCACGTTCATGTCCCTCTCTGAAGATGAGAAGA 839
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 780 AGGATGATATCGGAGATAAATCTGTTTTCACGTTCATGTCCCTTTCTGATGATGAAAAGA 839
Query 840 AGGCTATAGTTGAAAAACTCGAGCAAGAAAAGTTGGGGTAAGACTCTTGAATGATAGTGA 899
|||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 840 AGGCTATAGTTGAAAAGCTCGAGCAAGAAAAGTTGGGGTAAGAATCT-GAATGATAGTGG 898
Query 900 AATGTTTTAAGCATCTTCAAGATTAGGTAAATATCTTGTATCCATAGATTCTACTATAAA 959
|||||||||||||||||||||| |||||||||| |||||||||||||||||| | ||
Sbjct 899 AATGTTTTAAGCATCTTCAAGAACAGGTAAATATTTTGTATCCATAGATTCTATT-TA-- 955
Query 960 CCACTGAGGAGAGATGCTACTATAAACA--GTTTGTAGATTGTGATTAGTAGC 1010
|||||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct 956 CCACTGAGGAGAAATGCTACCATAAACACAGTTTGTAGATTGTGATTAGTAGC 1008
> AT2G01175.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:104884-106216
REVERSE LENGTH=1333
Length=1333
Score = 361 bits (195), Expect = 9e-99
Identities = 233/251 (93%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 331 TTGGTTAACTGAAAC-AATCAAGCAAAACCATGATTTGTTTTACTTTGTTGGTGCTAGTG 389
||| |||| || ||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 365 TTGATTAAGTG-AACTAATCAAGCAGAACCATGATTTGTTTTACTTTGTTGGTGCTAGTG 423
Query 390 GTTTGGGGCTATCTCTGTTTCTTATTCATATATATGTTACTG-AGATTAAGAGGACTCTT 448
|||||||||||||||||||||| |||| ||||||||||| || || ||||||||||||||
Sbjct 424 GTTTGGGGCTATCTCTGTTTCTAATTCGTATATATGTTA-TGGAGGTTAAGAGGACTCTT 482
Query 449 CAAGCTTTATGGGCACTTGGTTTTGTTGGTTCGTTGGCTACTTACGCAGCCCTTGCCAGA 508
|||||||||||||||||||| ||| ||||||| |||||||||| ||||||||||| |||
Sbjct 483 CAAGCTTTATGGGCACTTGGGTTTCTTGGTTCTTTGGCTACTTGTGCAGCCCTTGCTAGA 542
Query 509 CCAGCTGGTGATAACTTGGTTCATTATGTCGTTGATCATCCGTCTGCTGTTTGGTTTGTT 568
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 543 CCAGCCGGTGATAACTTGGTTCATTATGTCGTTGATCATCCATCTGCTGTTTGGTTTGTT 602
Query 569 GGTCCCCTTTT 579
|||||||||||
Sbjct 603 GGTCCCCTTTT 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5