BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473023

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G28150.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   553    7e-157


> AT1G28150.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 13 growth stages; Has 96 Blast hits 
to 96 proteins in 44 species: Archae - 0; Bacteria - 56; Metazoa 
- 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:9834943-9835904 REVERSE 
LENGTH=613
Length=613

 Score =  553 bits (299),  Expect = 7e-157
 Identities = 421/474 (89%), Gaps = 32/474 (7%)
 Strand=Plus/Plus

Query  22   AGGAAGAAGAAGAAGGAAGGGATGGGTTTTGTCTTAACCTGTACTTGTCCTCCGTCCTCC  81
            |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||   |||
Sbjct  43   AGGAAGAAGAAGAA-GAAGAGATGGGTTTTGTCTTAATCTGTACTTGTCCTCCG---TCC  98

Query  82   TCGCTTGTCGTCGTCTCTCAGCTTCACCATCACCAGTTCTCCGCCGGAGTCAAAAGCTGC  141
            |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct  99   TCGGGTGTCGTCGTCTCTCAGCTTCACCATCACCAGTTCTCCGCCGGAGTCAAAAGCAAT  158

Query  142  GAACTTTCCTCTCGTCCTCAGTTTTATCCGACTCGTAGAAGAACCCTAATTTCGAAATCA  201
            ||||  |  | | |      ||||  ||||||||||   |||||||||||||||||||||
Sbjct  159  GAAC--T--T-T-G------GTTTCGTCCGACTCGT---AGAACCCTAATTTCGAAATCA  203

Query  202  TCTTGTTTCAATCTCCCTCAAGAACCCATTCTCTCCGAGGCTCTCAAGGAGCCAATTGCA  261
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  204  TCTTGTTTCAATCTCCCTCAAGAACCCATTCTCTCCGAAGCTCTCAAGGAGCCAATTGCA  263

Query  262  TTTTTGGGTGGTATGTTTGCTGGA-TTGCTAAGACTTGATCTAAACGAAGAGCCGCTCAA  320
            || |||||||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  264  TTCTTGGGTGGGATGTTTGCTGGACTT-CTAAGACTTGATCTAAACGAAGAGCCGCTCAA  322

Query  321  GGATTGGGTGACGCGCACAGTTGAAGCCTCAGGTATTACAGAAGAAGATGTTGATGCAGA  380
            ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  323  GGATTGGGTGACGCGAACAGTTGAAGCCTCGGGTATTACAGAAGAAGAAGTTGATGCAGA  382

Query  381  TGGGATGGTTTCAAATGATGAAGACTCTCCTCAACAGATAGAGATTGAATGAGGTTTGCG  440
            |||| | ||||| |||||||||||||||||||||||||||||||||||||||||| | | 
Sbjct  383  TGGGGTTGTTTCCAATGATGAAGACTCTCCTCAACAGATAGAGATTGAATGAGGTGT-C-  440

Query  441  TTTTGGTTCTGCGATGACTCGGCTTTACCATCTGCAAGGTCCTTTTGTATGTAA  494
            ||  |||||||| | |  |    |||||||||||||||| ||||||||||||||
Sbjct  441  TT--GGTTCTGC-A-G--TA---TTTACCATCTGCAAGGACCTTTTGTATGTAA  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5