BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473024
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28160.1 | Symbols: | Integrase-type DNA-binding superfamil... 1166 0.0
> AT1G28160.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:9839387-9840124 FORWARD LENGTH=738
Length=738
Score = 1166 bits (631), Expect = 0.0
Identities = 700/733 (95%), Gaps = 6/733 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTTCAATGGTAATTTGAATGCCGGTTCTTCCTCTAGATCAAAAAAGAGTCATAGG 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGAGTTCAATGGTAATTTGAATGCCGGTTCTTGCTCTAGATCAAAAAAGAGTCATAGG 60
Query 61 CAAAAGCAGCAACAACCGCAACCGCAACCACACCAACATATTGAAGAAATAAAGTATGTA 120
|||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 61 CAAAAGCAGCAACAACCGCAGCCACAGCCACAACAACATATTGAAGAAATAAAGTATGTA 120
Query 121 GGGGTGAGGAGGAGGCCATGGGGAAGATACGCAGCTGAAATAAGAAACCCGACTACGAAA 180
|| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 121 GGAGTGAGGAGGAGGCCATGGGGAAGATATGCAGCTGAGATAAGAAACCCGACGACGAAA 180
Query 181 GAGAGGTATTGGCTAGGTACTTTTGACACAGCCGAAGAAGCTGCATTGGCCTATGATAGA 240
||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||
Sbjct 181 GAGAGGTATTGGCTAGGTACTTTTGACACGGCCGAGGAGGCTGCATTGGCTTATGATAGA 240
Query 241 GCTGCACGGTCCATAAGAGGCTTGACTGCTCGAACCAACTTTGTCTACTCCGATATGCCT 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCGCACGGTCCATAAGAGGCTTGACTGCTCGAACCAACTTTGTCTACTCCGATATGCCT 300
Query 301 CGTGGCTCCTCAGTAACTTCATTTGTCTCTCCTGATGAATCCCAACGTTTCATTTCCGAG 360
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CGTGGCTCCTCAGTAACTTCCTTTGTGTCTCCTGATGAATCCCAACGTTTCATTTCCGAG 360
Query 361 ATATTCAACCCTCCAAGCCAACTAGAAATTATTAACAGCAGCAACAACAACAAT--C--T 416
|||||||||||||||||||||||||| || |||||||| ||| ||||||||| | |
Sbjct 361 TTATTCAACCCTCCAAGCCAACTAGAAGCTACTAACAGCAACAATAACAACAATAACAAT 420
Query 417 CTCT--TCATCGACCAACAACCAAAACCAGAACTCTATTGAGTTCTCATACAATGGGTGG 474
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCTACTCATCGACCAACAACCAAAACCAGAACTCTATTGAGTTCTCATACAATGGGTGG 480
Query 475 CCTCAGGAGGCTGAATGTGGTTATCAATCTATAACCAGTAATGCTGAGCACTGTAATCAT 534
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 481 CCTCAGGAGGCTGAATGTGGTTATCAATCTATAACCAGTAATGCTGAGCATTGTGATCAT 540
Query 535 GAGCTTCCACCTCTTCCTCCCAGTACTTGTTTTGGAGCTGAACTGAGGATTCCGGAGACC 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGCTTCCACCTCTTCCTCCCAGTACTTGTTTTGGAGCTGAACTGAGGATTCCGGAGACG 600
Query 595 GATAGCTATTGGAATGTTGCGCATGCAAGCATAGACACGTTTGCCTTCGAGTTTGATGGC 654
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 GATAGCTATTGGAATGTTGCGCATGCAAGCATAGACACGTTTGCCTTCGAGCTTGATGGC 660
Query 655 TTTGTGGATCAAAACAGTCTTGGTCAGAGTGGAACAGAAGGGTTTAATTCTTTATCCTCC 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 TTTGTGGATCAAAACAGTCTTGGTCAGAGTGGAACAGAAGGGTTTAATTCTTTACCCTCC 720
Query 715 ACATTCTTCTACC 727
|||||||||||||
Sbjct 721 ACATTCTTCTACC 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35264371194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5