BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473024 Length=727 Score E Sequences producing significant alignments: (Bits) Value AT1G28160.1 | Symbols: | Integrase-type DNA-binding superfamil... 1166 0.0 > AT1G28160.1 | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:9839387-9840124 FORWARD LENGTH=738 Length=738 Score = 1166 bits (631), Expect = 0.0 Identities = 700/733 (95%), Gaps = 6/733 (1%) Strand=Plus/Plus Query 1 ATGGAGTTCAATGGTAATTTGAATGCCGGTTCTTCCTCTAGATCAAAAAAGAGTCATAGG 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 ATGGAGTTCAATGGTAATTTGAATGCCGGTTCTTGCTCTAGATCAAAAAAGAGTCATAGG 60 Query 61 CAAAAGCAGCAACAACCGCAACCGCAACCACACCAACATATTGAAGAAATAAAGTATGTA 120 |||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||| Sbjct 61 CAAAAGCAGCAACAACCGCAGCCACAGCCACAACAACATATTGAAGAAATAAAGTATGTA 120 Query 121 GGGGTGAGGAGGAGGCCATGGGGAAGATACGCAGCTGAAATAAGAAACCCGACTACGAAA 180 || |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 121 GGAGTGAGGAGGAGGCCATGGGGAAGATATGCAGCTGAGATAAGAAACCCGACGACGAAA 180 Query 181 GAGAGGTATTGGCTAGGTACTTTTGACACAGCCGAAGAAGCTGCATTGGCCTATGATAGA 240 ||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||| Sbjct 181 GAGAGGTATTGGCTAGGTACTTTTGACACGGCCGAGGAGGCTGCATTGGCTTATGATAGA 240 Query 241 GCTGCACGGTCCATAAGAGGCTTGACTGCTCGAACCAACTTTGTCTACTCCGATATGCCT 300 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCCGCACGGTCCATAAGAGGCTTGACTGCTCGAACCAACTTTGTCTACTCCGATATGCCT 300 Query 301 CGTGGCTCCTCAGTAACTTCATTTGTCTCTCCTGATGAATCCCAACGTTTCATTTCCGAG 360 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 301 CGTGGCTCCTCAGTAACTTCCTTTGTGTCTCCTGATGAATCCCAACGTTTCATTTCCGAG 360 Query 361 ATATTCAACCCTCCAAGCCAACTAGAAATTATTAACAGCAGCAACAACAACAAT--C--T 416 |||||||||||||||||||||||||| || |||||||| ||| ||||||||| | | Sbjct 361 TTATTCAACCCTCCAAGCCAACTAGAAGCTACTAACAGCAACAATAACAACAATAACAAT 420 Query 417 CTCT--TCATCGACCAACAACCAAAACCAGAACTCTATTGAGTTCTCATACAATGGGTGG 474 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTCTACTCATCGACCAACAACCAAAACCAGAACTCTATTGAGTTCTCATACAATGGGTGG 480 Query 475 CCTCAGGAGGCTGAATGTGGTTATCAATCTATAACCAGTAATGCTGAGCACTGTAATCAT 534 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 481 CCTCAGGAGGCTGAATGTGGTTATCAATCTATAACCAGTAATGCTGAGCATTGTGATCAT 540 Query 535 GAGCTTCCACCTCTTCCTCCCAGTACTTGTTTTGGAGCTGAACTGAGGATTCCGGAGACC 594 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GAGCTTCCACCTCTTCCTCCCAGTACTTGTTTTGGAGCTGAACTGAGGATTCCGGAGACG 600 Query 595 GATAGCTATTGGAATGTTGCGCATGCAAGCATAGACACGTTTGCCTTCGAGTTTGATGGC 654 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 601 GATAGCTATTGGAATGTTGCGCATGCAAGCATAGACACGTTTGCCTTCGAGCTTGATGGC 660 Query 655 TTTGTGGATCAAAACAGTCTTGGTCAGAGTGGAACAGAAGGGTTTAATTCTTTATCCTCC 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 661 TTTGTGGATCAAAACAGTCTTGGTCAGAGTGGAACAGAAGGGTTTAATTCTTTACCCTCC 720 Query 715 ACATTCTTCTACC 727 ||||||||||||| Sbjct 721 ACATTCTTCTACC 733 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35264371194 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5