BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473025
Length=1916
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosp... 1709 0.0
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosp... 176 7e-43
> AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843075-9845002
REVERSE LENGTH=1854
Length=1854
Score = 1709 bits (925), Expect = 0.0
Identities = 1083/1159 (93%), Gaps = 12/1159 (1%)
Strand=Plus/Plus
Query 763 CTATACCTTTAGGACTTGAACAGCGTGACGTTATCGGTATTTCA-CAGACGGGTTCTGGC 821
|||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||
Sbjct 695 CTATACCTTTAGGACTTGAACAGCGTGATGTTATCGGTATTTCAGC-TACGGGTTCCGGC 753
Query 822 AAAACCGCGGCTTTTGTTTTGCCAATGTTGGCTTACATATCTAGATTGCCACCATTGAGG 881
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 754 AAAACCGCGGCTTTTGTTTTGCCAATGTTGGCTTACATATCTAGGTTGCCACCAATGAGG 813
Query 882 GAAGAGAATCAGACAGAAGGTCCTTACGCGCTTGTTATGGCTCCTACAAGAGAGCTTGCA 941
||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||
Sbjct 814 GAAGAGAATCAGACAGAAGGTCCTTACGCTCTTGTTATGGTTCCTACACGGGAGCTTGCA 873
Query 942 CATCAAATTGAAGAAGAGACGGTTAAGTTTGCGCGTTATCTT-GGGTTTAAGGCGATCTC 1000
||||| || ||||||||||||||||||||| ||||||| ||| ||||| |||||| | ||
Sbjct 874 CATCAGATAGAAGAAGAGACGGTTAAGTTTTCGCGTTA-CTTGGGGTTCAAGGCGGTTTC 932
Query 1001 TATCACTGGTGGGGAGTCTATTGAGAAACAAGCTTTGAAACTATCACAAGGATGTGAGAT 1060
|||||||||| ||||||| || ||||||||||| |||||| |||||||||||||||||||
Sbjct 933 TATCACTGGTTGGGAGTCAATAGAGAAACAAGCCTTGAAATTATCACAAGGATGTGAGAT 992
Query 1061 TGTGATTGCTACACCTGGTCGATTGATAGATTGCCTTGAGAGAAGGTACGTGGTGTTGAA 1120
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 993 TGTGATTGCTACCCCTGGTCGATTGCTAGATTGCCTTGAGAGAAGGTACGTGGTGTTGAA 1052
Query 1121 CCAATGTAACTATTTAGTTCTTGATGAAGCTGACCGGATGATCGACATGGGTTTTGAGCC 1180
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1053 CCAATGTAACTATTTAGTTCTTGATGAAGCTGACCGGATGATTGACATGGATTTTGAGCC 1112
Query 1181 GCAGGTCGCGGAAGTGTTAGATGCAATGCCTTCG-AGTAATTTGAAACCCAAGAAGGAAG 1239
|||||| | ||||||||||||| |||||||| | ||||||||||||||| |||||||||
Sbjct 1113 ACAGGTCTCAGAAGTGTTAGATGTAATGCCTT-GTAGTAATTTGAAACCCGAGAAGGAAG 1171
Query 1240 ATGAAGAGCTCGAAGAAAAGAAGATTTACAGAACTACGTATATGTTCAGTGCCACTATGC 1299
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 ATGAAGAACTCGAAGAAAAAAAGATTTACAGAACTACGTATATGTTCAGTGCCACTATGC 1231
Query 1300 TTCATAGTGTAGAGCGTCTCGCTAGAAAGTACTTGAGGAATCCAGTTGTGGTCACCATTG 1359
||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 1232 TTCTTAGTGTAGAGCGTCTCGCTAGAAAATTCTTGAGGAATCCTGTTGTGGTCACCATTG 1291
Query 1360 GAGAAACCACAAAGTTTATCACTCAAAAAGTTG-TCATGACCAAAGAATCAAACAAATTC 1418
|||||||||||||||||||||||||| |||| | | ||||||||||||||| | || |||
Sbjct 1292 GAGAAACCACAAAGTTTATCACTCAACAAGT-GATTATGACCAAAGAATCAGATAAGTTC 1350
Query 1419 TCAAGGTTAAAGAAACTGATTGACGATCTCAG-TGATGATAAGACAGCGATTGTGTTTGT 1477
|| |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 1351 TCTAGGTTAAAGAAACTGATTGACGATCT-AGGTGATGATAAGACAGCGATAGTGTTTGT 1409
Query 1478 GAATACCAGGAACAAGGTTGATTACATTGTTAAGAATCTAGAAAAGTTAGCAAGGTGTCG 1537
||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct 1410 GAATACCAGGAACAAGGTTGATTACATTGTTAAGAATCTTGAAAAGGTAGGAAGGTGTCG 1469
Query 1538 TGTGACGACATTACACGCTGGGAAGTCACAAGAACAGAGAGATTATAGCTTAGAAGAATT 1597
|||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1470 TGTGACTACATTGCACGCAGGAAAGTCGCAAGAACAGAGAGATTATAGCTTAGAAGAATT 1529
Query 1598 CAAGAAAAAGAGATTCAACGTTCTTGTTACAACAGATGTTTTAGGCCGAGGGCTT-GATA 1656
||||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1530 CAAGAAAAAGAGATTTAACGTTCTTGTTACAACAGATGTTTTAGGCCGTGGG-TTAGATA 1588
Query 1657 TTCTTGACTTGGCACAAGTCATCAACTACGATATGCCTAACACAATGGATCTTTATACGC 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 TTCTTGACTTGGCACAAGTCATCAACTACGATATGCCTAACACAATGGATCTTTATACGC 1648
Query 1717 ATCGGATTGGACGAACAGGACGAGCAGGGAAGACATGTGTTGCGATAACGTTCTTGACTC 1776
|| |||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1649 ATAGGATTGGACGAACAGGGCGAGCAGGGAAGACAGGTGTTGCGACAACGTTCTTGACTC 1708
Query 1777 TTGAGGATAAAGATGTGTTTTACGGTCTGAAGCAGAAGCTTATTGAGTGTAACAGTTTTG 1836
|||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||| |
Sbjct 1709 TTGAGGATAAAGATGTGTTTTATGGTTTGAAGCAGAAGCTTAATGAGTGTAATAGTTTGG 1768
Query 1837 TGCCACCTGAACTTGCCAGACATGAAGCCTCTAAGTTTAAACCAGGAACCGTTCCCGATA 1896
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1769 TGCCACCTGAACTTGCGAGACATGAAGCCTCTAAGTTTAAACCAGGAACCTTTCCTGATA 1828
Query 1897 GATTCTCCCATTTTTAGGG 1915
|||||||||||||||||||
Sbjct 1829 GATTCTCCCATTTTTAGGG 1847
Score = 848 bits (459), Expect = 0.0
Identities = 619/695 (89%), Gaps = 16/695 (2%)
Strand=Plus/Plus
Query 1 CTGCGATGGAGAAGAAGACACTCGATTCCGACAATCTTATGAAGCCCGTATTCCTCACCA 60
||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 8 CTGCGATGGAGAAGAAGACGCTCGATTTCGACAATCTTACGAAGCCCGTATTCCTCACCA 67
Query 61 AAGCTCACAGAGAAGAATTAGCCCTAAAACGCCGTCAGGATGAAATCGCCGATTGTGATC 120
||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 68 AAGCTCACAGAAAAGAATTAGCCCTAAAACGCTGTCAGGATGAAATCGCCGATCGTGATC 127
Query 121 GCCGC--C-TCGTTCAGATCTCTTGCTCCAACCCCAATAATGGCGATGGAAACCGTTACA 177
||||| | |||||||||||||| |||||||| || |||||| ||||||||||||| |
Sbjct 128 GCCGCAGCATCGTTCAGATCTCTCGCTCCAACTCCGATAATGACGATGGAAACCGTCCCC 187
Query 178 GGGATCG-GAAACGAGAGCGTCATTC--AGGCAGTGACCGTAAACGAGACAGAGAGAGCG 234
| ||| | ||||||||| || || || || || |||| | | ||| ||||||||||||
Sbjct 188 GAGAT-GTGAAACGAGAACGACA-TCGAAGCCA-CGACCATGACCGAAACAGAGAGAGCG 244
Query 235 ATCGAGAGTTTCGTGAACGTGACGTCAAAGCTAGGGTTGAGAAATTAGAGAAGCTAAAGC 294
|||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||
Sbjct 245 ATCGAGAGTTTCGTGAACGTGAAGTTAAAGCTAGGGTTGAGAAATTAGAGATGGTAAAGC 304
Query 295 ACGAGAAAGAGATTAACGCCATGAAAGAGCAATACTTAGGATCTACGAAA-CCTAATAAG 353
||||||||||||||||| ||||||||||||||||||||| | || ||| ||||| |||
Sbjct 305 GTGAGAAAGAGATTAACGCAATGAAAGAGCAATACTTAGGAACAAC-AAAGCCTAAGAAG 363
Query 354 AGAGTCATCATCAAGCCGAGCAAGAATTTCCGTTTCGATTGGGAGAACACTGAAGATACT 413
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AGAGTCATCATGAAGCCGAGCAAGAATTTCCGTTTCGATTGGGAGAACACTGAAGATACT 423
Query 414 TCGAGTGGAGATATGAATGTTCTCTACCAAAACCCTCATGAAGCTCAGCTTCTGTTTGGG 473
| ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 424 TTGAGTGGAGAGATGAATGTTCTTTACCAAAACCCTCATGAAGCTCAGCCTCTGTTTGGG 483
Query 474 AGAGGGTTTCGCGCGGGAATAGACCGCCGTGAGCAGAAAAAACT-AGTGGCCACTAAGAA 532
||||||| ||||||||||||||| ||||||||||| |||||||| | || | |||| |
Sbjct 484 AGAGGGTGTCGCGCGGGAATAGATCGCCGTGAGCAAAAAAAACTTA-TGACGGGTAAGCA 542
Query 533 CTCTAGAGAGAAACGTGAGGAACAAGATAAGAATTGGAGTGAGAAGAAGTTAGAGGAGAT 592
| |||||||| ||||||||| |||||||| | ||||| ||||||||||||||||||||
Sbjct 543 CGAGAGAGAGAAGCGTGAGGAAGAAGATAAGCACTGGAGCGAGAAGAAGTTAGAGGAGAT 602
Query 593 GAGTGAAAGAGATTGGCGTATTTTCAAGGAAGATTTCGATATTTCTTACAAAGGATCCAA 652
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||
Sbjct 603 GAATGAAAGAGATTGGCGTATTTTCAAGGAAGATTTTAATATTTCTTACAGAGGATCAAA 662
Query 653 GATTACTCCTCATCCGATGAGGAGTTGGAAAGAGA 687
|||| | | |||||||||||||| |||| ||||||
Sbjct 663 GATT-C-C-TCATCCGATGAGGAATTGGGAAGAGA 694
> AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265450-14267972
REVERSE LENGTH=2523
Length=2523
Score = 176 bits (95), Expect = 7e-43
Identities = 211/264 (80%), Gaps = 20/264 (8%)
Strand=Plus/Plus
Query 270 GTTGAGAAATTAG-AGAAGCTAAAGCACGAGAAAGAGA-TTAACGCCATGAAAGAGCAAT 327
||||||||||||| | || | || | ||||| || | || ||||||| |||||||| |
Sbjct 534 GTTGAGAAATTAGTTG-AGAGAGAGAAGGAGAAGGA-ACTTGACGCCATTAAAGAGCAGT 591
Query 328 A-CTTAGGATCTACGAAACCTAATAAGAGAGTCATCATCAAGCCGAGCAAGAA-TTTCCG 385
| ||| ||| || ||| || || ||||||||||| | | ||| ||| |||| ||| ||
Sbjct 592 ATCTT-GGAGGTAAGAAGCCGAAGAAGAGAGTCAT--T-AGGCCAAGCGAGAAGTTT-CG 646
Query 386 -TT-TC----GATTGGGAGAACACTGAAGATACTTCGAGTGGAGATATGAATGTTCTCTA 439
|| || |||||||| |||||||| |||||||| | || |||||||| ||||| ||
Sbjct 647 TTTCTCTTTTGATTGGGAAAACACTGAGGATACTTCTA--GG-GATATGAACGTTCTTTA 703
Query 440 CCAAAACCCTCATGAAGCTCAGCTTCTGTTTGGGAGAGGGTTTCGCGCGGGAATAGACCG 499
||||||||||||||||||||||||||| ||||||||||||||||| || || || |||||
Sbjct 704 CCAAAACCCTCATGAAGCTCAGCTTCTCTTTGGGAGAGGGTTTCGTGCTGGTATGGACCG 763
Query 500 CCGTGAGCAGAAAAAACTAGTGGC 523
||||||||||| |||| || |||
Sbjct 764 TCGTGAGCAGAAGAAACAAGCGGC 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94879030050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5