BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473029 Length=1510 Score E Sequences producing significant alignments: (Bits) Value AT1G28210.2 | Symbols: ATJ1 | DNAJ heat shock family protein | ... 2346 0.0 > AT1G28210.2 | Symbols: ATJ1 | DNAJ heat shock family protein | chr1:9854546-9860158 FORWARD LENGTH=1517 Length=1517 Score = 2346 bits (1270), Expect = 0.0 Identities = 1439/1520 (95%), Gaps = 13/1520 (1%) Strand=Plus/Plus Query 1 CAAAAACCTCTCCG--TTTT-CTGT-T-TCT-GCTTTGAATCCACAAGAGTCATGCGAAG 54 |||||||||||||| |||| || | | | | ||||||||| |||||||||||||||||| Sbjct 1 CAAAAACCTCTCCGTTTTTTCCTCTCTGTTTAGCTTTGAATTCACAAGAGTCATGCGAAG 60 Query 55 ATTCAACTGGGTTTTGCGGCATGTACAAGCACGAAGAACATTTGATTCCGAGATCGGTTT 114 ||||||||||||| |||||||||||||||| |||||||| |||||||||| |||||| || Sbjct 61 ATTCAACTGGGTTCTGCGGCATGTACAAGCTCGAAGAACTTTTGATTCCGCGATCGGATT 120 Query 115 GCGTCAAGGGTCTCAGAAGCCGTTGTTCGAGCGTTACATTCACGCTACAGGAATATACAG 174 ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| Sbjct 121 GCGTCAAGGGTCTCAGAAGCCGTTGTTCGAGCGATACATTCACGCTACAGGTATAAACAA 180 Query 175 CTCCAGTGCTCGTAATTACTATGATGTTCTTGGTGTTTCTCCAAAAGCTACACGGGAGGA 234 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 181 CTCCAGTGCTCGTAATTACTATGATGTTCTCGGTGTTTCTCCTAAAGCTACACGGGAGGA 240 Query 235 GATTAAAAAGTCATTCCATGAGCTTGCGAAAAAATTCCACCCTGATACAAATAGAAATAA 294 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GATTAAAAAATCATTTCATGAGCTTGCGAAAAAATTCCACCCTGATACAAATAGAAATAA 300 Query 295 TCCGTCAGCAAAAAGGAAATTCCAGGAAATAAGAGAGGCTTATGAGACCCTGGGAAATTC 354 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 301 TCCGTCAGCAAAAAGGAAGTTCCAGGAAATAAGAGAGGCATATGAGACCCTGGGAAATTC 360 Query 355 GGAAAGAAGAGAAGAATATGATAAGCTAC-GCTATCAGAATTCGGATTATGTAAATAATG 413 ||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||| Sbjct 361 GGAAAGAAGAGAAGAATATGATAAGCTGCAG-TATCGGAATTCGGATTATGTAAATAATG 419 Query 414 ACGGTGGTGATGGAGAGAGGTTCAGACGTGCATACCAGTCCAATTTCTCGGATTCTTTCC 473 ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 420 ACGGTGGTGATTCAGAGAGGTTCAGACGTGCATACCAGTCCAATTTCTCGGATACTTTCC 479 Query 474 ACAAGATTTTTTCTGAGATATTCGAGAACAATCAGATAAAATCTGATATTCGGGTGGAAC 533 |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 480 ACAAGATTTTTTCTGAGATATTTGAGAACAATCAGATAAAACCTGATATTCGGGTGGAAC 539 Query 534 TGTCGCTTTCTTTTTCCGAAGCTGCAGAAGGGTGCACAAAACGTTTGTCTTTTGATGCAT 593 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TGTCGCTTTCTCTTTCCGAAGCTGCAGAAGGGTGCACAAAACGTTTGTCTTTTGATGCAT 599 Query 594 ATGTCTTTTGTGATTCCTGTGATGGGCTTGGCCACCCTCGTGATGCTGCCATGAGCGTTT 653 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| Sbjct 600 ATGTCTTTTGTGATTCCTGTGATGGGCTTGGCCACCCTAGCGATGCTGCCATGAGCATTT 659 Query 654 GTCCAACATGCAGGGGGGTTGGACGAGTAACTATTCCTCCTTTTACAGCATCATGCCAGA 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GTCCAACATGCAGGGGGGTTGGACGAGTAACTATTCCTCCTTTTACAGCATCATGCCAGA 719 Query 714 CGTGCAAGGGGACGGGACACATTATTAAGGAATACTGCGTGTCTTGTAGAGGATCCGGTA 773 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 720 CGTGCAAGGGGACGGGACACATTATTAAGGAATACTGCATGTCTTGTAGAGGATCAGGTA 779 Query 774 TTGTGGAAGCCACAAAGACAGTTGAACTTGTGATCCCTAGAGGGGTGGAGTCTGAAGCTA 833 ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 780 TTGTGGAAGGCACAAAGACAGCTGAACTTGTGATCCCTGGAGGGGTGGAGTCTGAAGCTA 839 Query 834 CGATCACAATCGGAGGTGCTGGTAATGTAAGATCAAGAACAAGTCAACCTGGGAACTTGT 893 | |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 840 CAATCACAATCGTAGGTGCTGGTAATGTAAGTTCAAGAACAAGTCAACCTGGGAACTTGT 899 Query 894 ATATCAAACTAAAGGTTGCTAATGATTCAACTTTCACTAGGGATGGCTCAGATATATATG 953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 ATATCAAACTAAAGGTTGCTAATGATTCAACTTTCACTAGGGATGGCTCAGATATATATG 959 Query 954 TGGATGCTAATATTAGCTTTACACAAGCCATTTTGGGAGGCAAAGTTGTGGTGCCAACAC 1013 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 960 TGGATGCTAATATTAGCTTTACACAAGCTATTTTGGGGGGCAAAGTTGTGGTGCCAACAC 1019 Query 1014 TTTCAGGCAAGATACAGCTAGATATACCAGAGGGGACTCAGCCTGGTCAACTTCTTGTTT 1073 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 1020 TTTCAGGCAAGATACAGCTAGATATACCAAAGGGGACTCAGCCTGATCAACTTCTTGTTT 1079 Query 1074 TAAGAGGCAAAGGACTACCGAAGCAAGGCTTTTTTGTAGATCATGGAGATCAGTATGTCC 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1080 TAAGAGGCAAAGGACTACCGAAGCAAGGCTTTTTTGTAGATCATGGAGATCAGTATGTTC 1139 Query 1134 GCTTCCGCGTTAACTTTCCTACTGAAGTGAATGAACGTCAGCGTGCTATATTGGAAGAGT 1193 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1140 GCTTCCGCGTTAACTTTCCTACTGAAGTGAATGAACGTCAGCGTGCTATACTGGAAGAGT 1199 Query 1194 TTGCAAAAGAAGAAATCAACAATGAATTGAGTGGCTCTGCTGAAGGAAGTTGGTGGAATA 1253 ||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||| Sbjct 1200 TTGCAAAGGAAGAAATCAACAATGAGTTGAGCGACTCTGCTGAAGGAAGTTGGTGGAATC 1259 Query 1254 TAAAGGGTCCTCAGATTATACGCGATTTCTCGTTAATGGTGCTGCTGGCGCTATTGTTGA 1313 ||| |||||||||||| || ||||| |||||||||||||||||||||||||||||||||| Sbjct 1260 TAACGGGTCCTCAGATCATCCGCGACTTCTCGTTAATGGTGCTGCTGGCGCTATTGTTGA 1319 Query 1314 ACAAGTTAGTCGGATGAAGCCACCACGAAAGATGGAAGATAAAAGCATTCAGCAGAAGAT 1373 || |||| | ||||||||||||||||| ||||| |||||||||||||||| ||||||| Sbjct 1320 GCAGGTTAATGGGATGAAGCCACCACGAGAGATGAAAGATAAAAGCATTCAACAGAAGAC 1379 Query 1374 AACAC-AAGACTAATTTCATTTATTGCTGGTAGAACAAACAGTTCAACAGCATAAAAGAA 1432 || | |||||||||||||| |||||||||||||||||| || ||| |||||||| ||| Sbjct 1380 AA-ATGAAGACTAATTTCATCTATTGCTGGTAGAACAAAAAGCTCACCAGCATAACAGAG 1438 Query 1433 AGGGTCAT-GATTTGACCTCATA-TTCTATTACAAACTCATTTGATGTGAATAATAAGAG 1490 || ||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1439 AGTGTCATTG-TTTGACCTCATAATTCTATTACAAACTCATTTGATGTGAATAATAAGAG 1497 Query 1491 ACATCAAACAAGTTAAGCTG 1510 |||||||||||||||||||| Sbjct 1498 ACATCAAACAAGTTAAGCTG 1517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74497608780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5