BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473029
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28210.2 | Symbols: ATJ1 | DNAJ heat shock family protein | ... 2346 0.0
> AT1G28210.2 | Symbols: ATJ1 | DNAJ heat shock family protein
| chr1:9854546-9860158 FORWARD LENGTH=1517
Length=1517
Score = 2346 bits (1270), Expect = 0.0
Identities = 1439/1520 (95%), Gaps = 13/1520 (1%)
Strand=Plus/Plus
Query 1 CAAAAACCTCTCCG--TTTT-CTGT-T-TCT-GCTTTGAATCCACAAGAGTCATGCGAAG 54
|||||||||||||| |||| || | | | | ||||||||| ||||||||||||||||||
Sbjct 1 CAAAAACCTCTCCGTTTTTTCCTCTCTGTTTAGCTTTGAATTCACAAGAGTCATGCGAAG 60
Query 55 ATTCAACTGGGTTTTGCGGCATGTACAAGCACGAAGAACATTTGATTCCGAGATCGGTTT 114
||||||||||||| |||||||||||||||| |||||||| |||||||||| |||||| ||
Sbjct 61 ATTCAACTGGGTTCTGCGGCATGTACAAGCTCGAAGAACTTTTGATTCCGCGATCGGATT 120
Query 115 GCGTCAAGGGTCTCAGAAGCCGTTGTTCGAGCGTTACATTCACGCTACAGGAATATACAG 174
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 121 GCGTCAAGGGTCTCAGAAGCCGTTGTTCGAGCGATACATTCACGCTACAGGTATAAACAA 180
Query 175 CTCCAGTGCTCGTAATTACTATGATGTTCTTGGTGTTTCTCCAAAAGCTACACGGGAGGA 234
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 181 CTCCAGTGCTCGTAATTACTATGATGTTCTCGGTGTTTCTCCTAAAGCTACACGGGAGGA 240
Query 235 GATTAAAAAGTCATTCCATGAGCTTGCGAAAAAATTCCACCCTGATACAAATAGAAATAA 294
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATTAAAAAATCATTTCATGAGCTTGCGAAAAAATTCCACCCTGATACAAATAGAAATAA 300
Query 295 TCCGTCAGCAAAAAGGAAATTCCAGGAAATAAGAGAGGCTTATGAGACCCTGGGAAATTC 354
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 TCCGTCAGCAAAAAGGAAGTTCCAGGAAATAAGAGAGGCATATGAGACCCTGGGAAATTC 360
Query 355 GGAAAGAAGAGAAGAATATGATAAGCTAC-GCTATCAGAATTCGGATTATGTAAATAATG 413
||||||||||||||||||||||||||| | | |||| |||||||||||||||||||||||
Sbjct 361 GGAAAGAAGAGAAGAATATGATAAGCTGCAG-TATCGGAATTCGGATTATGTAAATAATG 419
Query 414 ACGGTGGTGATGGAGAGAGGTTCAGACGTGCATACCAGTCCAATTTCTCGGATTCTTTCC 473
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 ACGGTGGTGATTCAGAGAGGTTCAGACGTGCATACCAGTCCAATTTCTCGGATACTTTCC 479
Query 474 ACAAGATTTTTTCTGAGATATTCGAGAACAATCAGATAAAATCTGATATTCGGGTGGAAC 533
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 480 ACAAGATTTTTTCTGAGATATTTGAGAACAATCAGATAAAACCTGATATTCGGGTGGAAC 539
Query 534 TGTCGCTTTCTTTTTCCGAAGCTGCAGAAGGGTGCACAAAACGTTTGTCTTTTGATGCAT 593
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTCGCTTTCTCTTTCCGAAGCTGCAGAAGGGTGCACAAAACGTTTGTCTTTTGATGCAT 599
Query 594 ATGTCTTTTGTGATTCCTGTGATGGGCTTGGCCACCCTCGTGATGCTGCCATGAGCGTTT 653
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 600 ATGTCTTTTGTGATTCCTGTGATGGGCTTGGCCACCCTAGCGATGCTGCCATGAGCATTT 659
Query 654 GTCCAACATGCAGGGGGGTTGGACGAGTAACTATTCCTCCTTTTACAGCATCATGCCAGA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTCCAACATGCAGGGGGGTTGGACGAGTAACTATTCCTCCTTTTACAGCATCATGCCAGA 719
Query 714 CGTGCAAGGGGACGGGACACATTATTAAGGAATACTGCGTGTCTTGTAGAGGATCCGGTA 773
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 720 CGTGCAAGGGGACGGGACACATTATTAAGGAATACTGCATGTCTTGTAGAGGATCAGGTA 779
Query 774 TTGTGGAAGCCACAAAGACAGTTGAACTTGTGATCCCTAGAGGGGTGGAGTCTGAAGCTA 833
||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 780 TTGTGGAAGGCACAAAGACAGCTGAACTTGTGATCCCTGGAGGGGTGGAGTCTGAAGCTA 839
Query 834 CGATCACAATCGGAGGTGCTGGTAATGTAAGATCAAGAACAAGTCAACCTGGGAACTTGT 893
| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 840 CAATCACAATCGTAGGTGCTGGTAATGTAAGTTCAAGAACAAGTCAACCTGGGAACTTGT 899
Query 894 ATATCAAACTAAAGGTTGCTAATGATTCAACTTTCACTAGGGATGGCTCAGATATATATG 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ATATCAAACTAAAGGTTGCTAATGATTCAACTTTCACTAGGGATGGCTCAGATATATATG 959
Query 954 TGGATGCTAATATTAGCTTTACACAAGCCATTTTGGGAGGCAAAGTTGTGGTGCCAACAC 1013
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 960 TGGATGCTAATATTAGCTTTACACAAGCTATTTTGGGGGGCAAAGTTGTGGTGCCAACAC 1019
Query 1014 TTTCAGGCAAGATACAGCTAGATATACCAGAGGGGACTCAGCCTGGTCAACTTCTTGTTT 1073
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1020 TTTCAGGCAAGATACAGCTAGATATACCAAAGGGGACTCAGCCTGATCAACTTCTTGTTT 1079
Query 1074 TAAGAGGCAAAGGACTACCGAAGCAAGGCTTTTTTGTAGATCATGGAGATCAGTATGTCC 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1080 TAAGAGGCAAAGGACTACCGAAGCAAGGCTTTTTTGTAGATCATGGAGATCAGTATGTTC 1139
Query 1134 GCTTCCGCGTTAACTTTCCTACTGAAGTGAATGAACGTCAGCGTGCTATATTGGAAGAGT 1193
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1140 GCTTCCGCGTTAACTTTCCTACTGAAGTGAATGAACGTCAGCGTGCTATACTGGAAGAGT 1199
Query 1194 TTGCAAAAGAAGAAATCAACAATGAATTGAGTGGCTCTGCTGAAGGAAGTTGGTGGAATA 1253
||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 1200 TTGCAAAGGAAGAAATCAACAATGAGTTGAGCGACTCTGCTGAAGGAAGTTGGTGGAATC 1259
Query 1254 TAAAGGGTCCTCAGATTATACGCGATTTCTCGTTAATGGTGCTGCTGGCGCTATTGTTGA 1313
||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1260 TAACGGGTCCTCAGATCATCCGCGACTTCTCGTTAATGGTGCTGCTGGCGCTATTGTTGA 1319
Query 1314 ACAAGTTAGTCGGATGAAGCCACCACGAAAGATGGAAGATAAAAGCATTCAGCAGAAGAT 1373
|| |||| | ||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 1320 GCAGGTTAATGGGATGAAGCCACCACGAGAGATGAAAGATAAAAGCATTCAACAGAAGAC 1379
Query 1374 AACAC-AAGACTAATTTCATTTATTGCTGGTAGAACAAACAGTTCAACAGCATAAAAGAA 1432
|| | |||||||||||||| |||||||||||||||||| || ||| |||||||| |||
Sbjct 1380 AA-ATGAAGACTAATTTCATCTATTGCTGGTAGAACAAAAAGCTCACCAGCATAACAGAG 1438
Query 1433 AGGGTCAT-GATTTGACCTCATA-TTCTATTACAAACTCATTTGATGTGAATAATAAGAG 1490
|| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1439 AGTGTCATTG-TTTGACCTCATAATTCTATTACAAACTCATTTGATGTGAATAATAAGAG 1497
Query 1491 ACATCAAACAAGTTAAGCTG 1510
||||||||||||||||||||
Sbjct 1498 ACATCAAACAAGTTAAGCTG 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74497608780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5