BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473032
Length=2311
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28240.1 | Symbols: | Protein of unknown function (DUF616) ... 3417 0.0
> AT1G28240.1 | Symbols: | Protein of unknown function (DUF616)
| chr1:9868316-9872211 REVERSE LENGTH=2364
Length=2364
Score = 3417 bits (1850), Expect = 0.0
Identities = 2210/2369 (93%), Gaps = 84/2369 (4%)
Strand=Plus/Plus
Query 3 TTTTTGTTTGTTAGAG-A-GGC--GAGAGAGTGAC-TTTTTTG-TTGCCCATTGTTGTTA 56
|||||||||||||||| | ||| ||||||||||| ||||||| ||| || | ||||||
Sbjct 6 TTTTTGTTTGTTAGAGAAGGGCGAGAGAGAGTGACTTTTTTTGTTTG-CC--T-TTGTTA 61
Query 57 ATGGCATTTGTGTGAGAGATTCATTG-A-TTTTTGAAAATTCTGAGGAATAAAAACCCTA 114
||||| ||||||| ||||||||||| | |||||||||||||||| ||||||||||| ||
Sbjct 62 ATGGC--TTGTGTGTGAGATTCATTGAATTTTTTGAAAATTCTGACGAATAAAAACCATA 119
Query 115 TCTACCAATCACAAACCCTAGA-TTTTGAT-TCTTCTTCATCTGAA-TTTCTC-TTGATC 170
|||||||||||||||||||||| ||||| | ||||||||||| ||| ||||| ||||||
Sbjct 120 TCTACCAATCACAAACCCTAGATTTTTGTTATCTTCTTCATCCGAAGATTCTCTTTGATC 179
Query 171 TGTGTCTCCTTCCTTGTGATTTCTCCCATTTCA-TTCATTGATTCTTTTTGATTCGATTC 229
||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 180 TGTGTCTCCTTCCTTCTGA-TTCTCCCATTTCATTTCATTGATTC-TTTTGATTCGATTC 237
Query 230 AATTCGAGCTCAATTTCGCAGATCAGGACCCAGAATCGAATTCGGGGTCACTTGAACAAT 289
||||||||||||||| | ||||||| ||||||||||||||| ||| | |||||||||||
Sbjct 238 TATTCGAGCTCAATTTTGTAGATCAGAACCCAGAATCGAATTTGGGATAACTTGAACAAT 297
Query 290 ATCGTTTGGTGACTTGTTGATCTGAATTTGAGTGAAGAAGACATCGAATTCGAGTTT-G- 347
||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 298 ATC-CTTGGTAACTTGTTGATCTGAATTTGAGTGAAGAAGACATCGAATTCAAGTTTGGT 356
Query 348 GT--GTGA--TGATTT-A--GAG-GA-G--G-----AA---G-A-CAAAAGGGAACGATG 386
|| | || | ||| | ||| || | | || | | |||||||||||||
Sbjct 357 GTGGGAGATTTTTTTTAATGGAGTGATGATGATTTAAAGGGGAAGGTAAAGGGAACGATG 416
Query 387 ACTGGATTGGGTGTTCGATCCAGTAGCTATGGTTCCTTGGAGAAGACGGGACTTAACGGC 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ACTGGATTGGGTGTTCGATCCAGTAGCTATGGTTCCTTGGAGAAGACGGGACTTAACGGC 476
Query 447 GTCGTTTTGCCTATTCAGATCACCACCACGACGCGTACCAAACCATCTAAGATGCAGAAA 506
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 477 GTCGTTTTACCTATCCAGATCACTACCACGACGCGTACCAAACCATCTAAGATGCAGAAA 536
Query 507 GATAGAGAAGGGATTGTACATTGGATCTGCAAATTCGCTGGTCGTAAGAAGGTTGGCATG 566
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GATAGAGAAGGTATTGTACATTGGATCTGCAAATTCGCTGGTCGTAAGAAGGTTGGCATG 596
Query 567 TGGCTTCTTTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGGT 626
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTGCTTCTCTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGGT 656
Query 627 -AATCAAT-GTGAAGATGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCACTTCTGGCG 684
|| || || | || |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 657 GAA--GATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCAGTTCAGGCG 714
Query 685 TAAATTATTCAAATATGTTACAAACAAATGAAGAGCAAAACATGAATATTGGAAATATAT 744
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 715 TAAATTATTCAAATATGTTACAAACAAATGAAGAGCTAAACATGAATATTGGAAATATAT 774
Query 745 CGTTTAAGGCAAAAGAAGTTATTGTGTTCCCTCCTCCTCCTCCTATGCATTTTCTTGGCT 804
|||| ||||||||||||||||||||||| | |||||||||||||| ||||||||||| |
Sbjct 775 CGTTCAAGGCAAAAGAAGTTATTGTGTT--C-CCTCCTCCTCCTATACATTTTCTTGGTT 831
Query 805 ATTCGCTTCCTCAAGGTCATCCTTGTAACAGTTTCACCTTACCTCCCCCACCAGCTGACA 864
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 832 ATTCGCTTCCTCAAGGTCATCCTTGTAACAGTTTCACTTTACCTCCCCCACCAGCAGACA 891
Query 865 GAAAAAGAACAGGACCACGCCCATGCCCCGTATGTTACCTTCCAGTAGAAGAAGCAGTTG 924
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 892 GGAAAAGAACAGGACCACGCCCATGCCCGGTATGTTACCTTCCAGTAGAAGAAGCAGTTG 951
Query 925 CCTTGATGCCAAATGCCCCGTCATTTTCCCCTGTTCTTAAGAACTTAACGTATATATGTG 984
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 952 CCTTGATGCCAAATGCCCCATCATTTTCCCCTGTTCTTAAGAACTTAACGTATATATATG 1011
Query 985 AAGAACCGTTAAACAGAGAGACAGAGTTTGGAGGGTCAGATTTTGGTGGTTATCCTACAT 1044
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1012 AAGAACCGTTAAACAGAGAGACAGAGTTTGGAGGGTCAGATTTTGGTGGTTATCCTACTT 1071
Query 1045 TGAAACATAGGAATGATTCTTTTGACATTAAAGAAACAATGAGTGTACATTGTGGGTTTG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TGAAACATAGGAATGATTCTTTTGACATTAAAGAAACAATGAGTGTACATTGTGGGTTTG 1131
Query 1105 TCAAAGGACCTCAGCCTGGTCGAAATACAGGATTTGACATTGATGAGGCAGATCTTCTTG 1164
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TCAAAGGACCTCAACCTGGTCGAAATACAGGATTTGACATTGATGAGGCAGATCTTCTTG 1191
Query 1165 AAATGAAGCAGTGTCGTGGGATAGTTGTTGCTTCAGCAGTATTTGATGCTTTTGATGATG 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 AAATGAAGCAGTGTCGTGGGATAGTTGTTGCTTCAGCAGTATTTGATGCTTTTGATGATG 1251
Query 1225 TAAAAGCCCCACAAAATATCAGTAAATATGCGGAGGAAACAGTTTGCTTCTACATTTTTG 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1252 TAAAAGCCCCACAAAATATCAGTAAATATGCGGAGGAAACAGTTTGCTTCTACATGTTTG 1311
Query 1285 TTGATGAAGAAACTGAATCAATTTTGAAGAGAGAACGAGGCCTTGATGGCAACAAGAAAG 1344
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1312 TTGATGAAGAGACTGAATCAATTTTGAAGAGAGAACGAGGCCTTGATGGCAATAAGAAAG 1371
Query 1345 TAGGGATATGGAGAGTTGTTGTTGTTCATAATCTCCCCTATTCTGATGGAAGGCGCAATG 1404
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1372 TAGGGATATGGAGAGTTGTTGTTGTTCATAATCTCCCCTATTCAGATGGAAGGCGCAATG 1431
Query 1405 GAAAGGTTCCCAAGCTTCTTGTCCATAGGATGTTTCCAAATGCTCGCTATTCTTTATGGA 1464
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GAAAGGTGCCCAAGCTTCTTGTCCATAGGATGTTTCCAAATGCTCGCTATTCTTTATGGA 1491
Query 1465 TTGACGGAAAACTTGAGCTTGTCGTCGATCCATATCAAATTCTTGAAAGGTTCTTGTGGA 1524
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1492 TTGACGGAAAACTAGAACTTGTCGTCGATCCATATCAAATTCTTGAAAGATTCTTGTGGA 1551
Query 1525 GGAAAAATGCTACTTTTGCAATTTCTAGACATTACAAACGATTTGATGTCTTAGTAGAAG 1584
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1552 GGAAAAATGCTACTTTTGCTATTTCTAGACATTACAAACGATTTGATGTCTTAGTGGAAG 1611
Query 1585 CCGAAGCAAATAAAGCTGCTGGTAAATATGATAATGCTTCTATCGACTTTCAAGTGGATT 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 CCGAAGCAAATAAAGCTGCTGGTAAATATGATAATGCTTCTATCGACTTTCAAGTGGATT 1671
Query 1645 TTTACAAGAATGAAGGGTTAACCCCTTATTCTGTCGCAAAGCTCCCAATCACAAGCGACG 1704
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 TTTACAAGAACGAAGGGTTAACCCCTTATTCTGTCGCAAAGCTCCCAATCACAAGCGACG 1731
Query 1705 TACCCGAGGGCTGTGTCATTTTAAGAGAGCATGTTCCCATAAGCAACCTCTTTACTTGTC 1764
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1732 TACCCGAGGGTTGTGTCATTTTAAGAGAGCATGTTCCCATAAGCAACCTCTTCACTTGTC 1791
Query 1765 TTTGGTTCAACGAAGTTGACCGATTCACTTCAAGAGATCAAATCAGTTTCTCAACTGTAA 1824
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1792 TTTGGTTCAACGAAGTTGACCGATTCACTTCTAGAGATCAAATCAGTTTCTCAACAGTAA 1851
Query 1825 GAGATAAAATTGCAGCAAAAACAAACTGGACAGTAAGCATGTTCCTTGATTGTGAAAGAC 1884
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 GAGATAAGATCGCAGCAAAAACAAACTGGACAGTAAGCATGTTCCTTGATTGTGAAAGAC 1911
Query 1885 GCAATTTTGTAGTTCAGAGATATCACCGAGCAGAACAAGAAAGATTTGCAAGGCAACGAG 1944
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 GCAATTTTGTAGTTCAGAGATATCACCGAGCAGAACAAGAAAGATTTGCAAGGCAACGAC 1971
Query 1945 CTCTGGTGCCTAATTTTCCTCC---ACC------GCC---TCCACCAGTTTTAATCAGCA 1992
||| |||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 1972 CTCCGGTGCCTAATTTTCCTCCTCCACCACCTTCGCCGCCTCCACCAGTTTTAATCAGCA 2031
Query 1993 GCGATCTGCCTAGAAAAATGTCAAGTGGAAGAGCGGTTAGCACAACGCCGCCTAGAAGAC 2052
||||| |||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 2032 GCGATTTGCCTAGAAAAATGTCAAGTGGAAGAGC----A--AC---GCCGCCTAGAAGAC 2082
Query 2053 GTGGAAGAGACAGACGGTCTGGTCAAAGGGGTCACAGGAAAGCTAGTTTGCCTGTAAGAT 2112
| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2083 GAGGAAGAGACAGACGGTCTGGTCAAAGGGGTCACAGGAAAGCTAACTTGCCAGTAAGAT 2142
Query 2113 TACCAGATTCAGCTTAAAGAGTTGG--T---TCTTCTACTTCTTC---AGGGTCACCCTC 2164
||||||||||||||||| ||||||| | |||||| ||||||| | |||||| |||
Sbjct 2143 TACCAGATTCAGCTTAA-GAGTTGGCGTCCGTCTTCTTCTTCTTCTTCATGGTCACTCTC 2201
Query 2165 ATCACCAACCTCACATTCCAATTTTACCACACAGTATGTTTATTTTTT--GTTTCTCTAT 2222
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2202 ATCACCAACATCACATTCCAATTTTACCACACAGTATGTTTATTTTTTTTGTTTCTCTAT 2261
Query 2223 TTGATTCTAAGGATTCAAAATCAATTTTTTAATGTATATATACACACGAACATTTTGTAC 2282
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2262 TTGATTCTAAGGATTCAAAATCAATTTTTTAATGTATATATATACACGAACATTTTGTAC 2321
Query 2283 TTGGATAATAAATTATAGTTTCGAATTTT 2311
|||||||||||||||||||||||||||||
Sbjct 2322 TTGGATAATAAATTATAGTTTCGAATTTT 2350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114708245325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5