BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473035
Length=2823
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28260.1 | Symbols: | Telomerase activating protein Est1 | ... 3976 0.0
> AT1G28260.1 | Symbols: | Telomerase activating protein Est1
| chr1:9875600-9879174 REVERSE LENGTH=3211
Length=3211
Score = 3976 bits (2153), Expect = 0.0
Identities = 2579/2783 (93%), Gaps = 35/2783 (1%)
Strand=Plus/Plus
Query 35 GTTTCTTCTGGCTGCTTTTGTGCTCTGTCTTCAAATTTCGAACACTTG-C---------- 83
||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 315 GTTTC-TCAGGCTGCTTTTGTGCTCTGTCTTCAAATTTCGAACACTTGTCTGAGATATAT 373
Query 84 ----CTGATTCCAAACATCATGGAAGCTAATTCAGCTGATCAGAAACAAAAACCTAACTT 139
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TTGTCTGATTCCAAAGATCATGGAAGCTAATTCAGCTGATCAGAAACAAAAACCTAACTT 433
Query 140 TCTTGTTGAGGTTAACAACATTGAGAAACAGCTATGGACATTAATCCATTCAAAGGGTAT 199
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 434 TCTTGTTGAGGTTAATAACATTGAGAAACAGCTATGGACATTAATCCATTCAAAGACTAT 493
Query 200 ATTGCATCCCGATGTTTCTGAACTATACGTGAAAGCTGGTTCGACATACGAGCAAATCTT 259
||||||| |||||||||| ||| |||||| ||||||||||||||| ||||||||||||||
Sbjct 494 ATTGCATACCGATGTTTCAGAATTATACGCGAAAGCTGGTTCGACCTACGAGCAAATCTT 553
Query 260 TAAAAGCAATCTTCAACACGAAGAGCTTCAAGAAATAGAGTTCTGCCTCTGGAAACTCCA 319
|||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 554 TAAAAGCAATCTCCAACACGAAGAGCTTCAAGAAGTAGAGTTCTGTCTCTGGAAACTCCA 613
Query 320 CTATAAACACATCGATGAGTTTCGTAAAGGCCTTAAAACAGATGATCCTATCAAGCATAT 379
|||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 614 CTATAAACACATCGATGAGTTTCGTAAAGGCCTTAAAACAAATGATCATGCCAAGCATAT 673
Query 380 GAAAGCATTCAAGTTGTTTCTTTCAAAAGCGGCCGAGTTTTACCAGAGTCTGATTTCCAA 439
||||||||||||||||||||| |||||||| || ||||||||||||| ||||||||||||
Sbjct 674 GAAAGCATTCAAGTTGTTTCTGTCAAAAGCAGCTGAGTTTTACCAGAATCTGATTTCCAA 733
Query 440 AGTCAGAGGATATTACCACAGACTCTCCGAGGAATCTGGAGAGCAAAAAAGCAGATTCTT 499
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 734 AGTCAGAGGATATTACCACAGACTCTCCGAGGAATCAGGAGAGCAAAAAAGCAGATTCTT 793
Query 500 ATGCCATCGTTTCTACATTTGTCTTGGAGATCTTCAAAGGTATCAAGAACAATATCTGAA 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 ATGCCATCGTTTCTACATTTGTCTTGGAGATCTTCAAAGGTATCAAGAACAATATCTGAA 853
Query 560 AACACATGAGCATCCTAATTGGTCAACTGCAGCTACTTACTATCTTGAAGCGGCAAAATC 619
| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 854 AGCACATGAACATCCTAATTGGTCAACTGCAGCTACTTACTATCTTGAAGCTGCAAAATC 913
Query 620 TTGGCCTGATAGTGGAAATCCTCATAACCAGGTAGCTGTATTGGCGACATATGTTGGTGA 679
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 914 TTGGCCTGATAGTGGAAATCCTCATAACCAGCTAGCTGTATTGGCCACATATGTTAGTGA 973
Query 680 TGAGTTTTTGGCTCTGTACCATTGTC-TAAGAAGCTTAGCTGTGAAAGAACCTTTTCCTG 738
|||||| ||||||||||| || || | |||||||||||||||||||||| ||||||||||
Sbjct 974 TGAGTTATTGGCTCTGTATCACTG-CGTAAGAAGCTTAGCTGTGAAAGAGCCTTTTCCTG 1032
Query 739 GTGCTTCGAACAATCTTGTTTTGTTGTTTGAGAAGAACAGGTCTTCTCCTTTGAAATCTC 798
||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| | ||||
Sbjct 1033 GTGCTTCGAACAATCTTCTTTTGTTGTTTGAGAAGAACAGGTCATCTCCATTGCAGTCTC 1092
Query 799 TGTCTACTGATGCACAGTTTAACTACTTAAACCCATCGGAGAGAAATGTTTCTCTGAAG- 857
|||||||||||||| |||||||||||||||||||||| |||| ||| |||||| |||||
Sbjct 1093 TGTCTACTGATGCAGAGTTTAACTACTTAAACCCATCAGAGAAAAAAGTTTCTGTGAAGG 1152
Query 858 AACCGTGATTTGTCAAAAGCAAAAGGAGAACAAGCTGCCGGAATTGATTTATGGCCCCTG 917
||| | ||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1153 AAC-GAGATTTGTCAAAAGCAAAAGGAGAACTAGTTGCCGGAATTGATTTATGGCCCCTG 1211
Query 918 GTTGTTCGAACAACTAGCTTCTTTTTCCTTAAATCCAGTTTTGATGAGCTTGGTTGTGCA 977
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 1212 GTTGTTCGAACAACTAGCTTCTTTTTCCTTAAATCCAGTTTTGATGAGTTTGGTCGGGCA 1271
Query 978 TTTGCATCAACTATAAGAGAACTGGATGCAGCATTTGCAGCAGATGATAGAAATCTAGAA 1037
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1272 TTTGCATCAACTATAAGAGAACTGGATGCAGCGTTTGCAGCAGATGATAGAAATCTAGAA 1331
Query 1038 GCCATGTTGGAGTCTTATCAATTTATGGACACAGCGAGAAAGGGACCGTATAAAATTCTC 1097
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 1332 GCCATGTTGGAGTCTTATCAATTTATGGACACGGCGAGAAAGGGACCTTATAAAATCCTC 1391
Query 1098 CAACTTGTTGCGGTTTTCATCTTCATCTTCCACAATTTAGCCGAGGTTAATGGATCAGAC 1157
||| ||||||||||||| |||| |||||||||||||||||| |||| ||||||||| |||
Sbjct 1392 CAAATTGTTGCGGTTTTTATCTACATCTTCCACAATTTAGCAGAGGCTAATGGATCCGAC 1451
Query 1158 AACGTGAAGGAGGCAGTTAAGCTTACAAATTCAGCATTTACTATGGTGTTCATCGTCATG 1217
| |||||| |||| ||||||||| ||||||| |||||| ||||||||||| |||||||||
Sbjct 1452 ATCGTGAAAGAGGAAGTTAAGCTAACAAATTTAGCATTAACTATGGTGTTTATCGTCATG 1511
Query 1218 GGGCGAGTTGTTGAGAGATGTTTGCAGACGAGTCCCTTGGGTTCTTGCCCTCTCTTGCCT 1277
|||||||||||||||||||||||| |||| | |||||||| ||||||||||||||| |||
Sbjct 1512 GGGCGAGTTGTTGAGAGATGTTTGAAGACAACTCCCTTGGATTCTTGCCCTCTCTTACCT 1571
Query 1278 GCTCTACTTGTATTTCTAGACTACTTACCGCTTCTGCTTGACAAGGTAGAAGAAGAAGAA 1337
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1572 GCTCTACTTGTATTTCTAGACTACTTACCGTTTCTGCTTGACAAGGTAGAAGAAGAAGAA 1631
Query 1338 GAA---TGCAGGTTTGATGAGAAGAGCGAGACTGCAATATCTTACTTCTTTTGCAAACTC 1394
||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 1632 GAAGAATGCAGGTTTGATGAGAAGAGCAAGAGTGCAATATCTTACTTCTTTGGCAAACTC 1691
Query 1395 CTTGATTTCTTGAACCAGTTAAAGGTGAAAGGCAAAAACTGCTCTGCTAAAACGTTGGTA 1454
||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 1692 GTTGATATCTTGAACCAGTTAAAGGTGAAAGACAAAAACTGCCCTGCTAAAACGTTGTTA 1751
Query 1455 CCTATCTGGGAAGATCATGAACTGAAGTCTTTGGCTCCTCTGGCTTCCATACAAGTACTT 1514
|| ||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||
Sbjct 1752 GCTCTCTGGGAAGATCATGAACTGAAGTCCTTGGCTCCTCTGGCTCCCATACATGCACTT 1811
Query 1515 TTGGATTTCTCAAGTCATATGGATCTAAGAGAGAGTTTTGATAGAGGGAAGGAGCTCCGT 1574
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1812 TTGGATTTCTCAAGTAATATGGATCTTAGAGAGAGTTTTGATAGAGGGAAGGAGCTTCGT 1871
Query 1575 CTTCAGCGGATTATTAATTCCGCAATTGAGATCACAAGTAGGCAGAAGAAGGGTTCTCAA 1634
||||| |||||||||| ||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct 1872 CTTCAACGGATTATTAGTTCAGCAATTGATATCACAACTAGGCAGAAGAAGGGTTCTCAA 1931
Query 1635 AAGTGGGTATTCTTTGACAAGCAACTGACTCATTTCTACACAACTTTGGGTGAATTGCAA 1694
|||||| ||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 1932 AAGTGGCTATTCTTTGACAATCAACGGACTCATTTCTACACAACTTCGGGTGAATTGCAA 1991
Query 1695 TGCAAAGAAGAGCTCTTTCATGGAAATGGAGAGGGTAGTAGCAAAAAATGTGTTACT-TT 1753
|||| | |||||||||||||||||||||||||||||| | || |||||| |||||| ||
Sbjct 1992 AGCAACGGAGAGCTCTTTCATGGAAATGGAGAGGGTAGAAACAGAAAATGCGTTACTATT 2051
Query 1754 AGGACCAGTTGAAATCATTCCTTGTG-AGAATGAAAGATCTGTGCCTGTAGAAGAGGAAG 1812
|||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 2052 -GGACCAGTTGAAATCATTCCTT-TGGAGAATGAAAGATCTGTTCCTGTAGAAGAGGAAG 2109
Query 1813 AAGTCATTCTTCTCAAGCCGCTCGTAAGGTGTCAATCTGCTCCAATCTATTCTTCTGGCA 1872
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2110 AAGTCATTCTTCTCAAGCCGCTCGTAAGGTGTCAATCTGCTCCAATATATTCTTCTGGCA 2169
Query 1873 TTGCAACAAAGCCACTCAGCTCCGATAGCACAACTTCAGGAAATCAAACAACTACATCCG 1932
||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 2170 TTGCAGCAAAGCCACTTAGCTCTGATTGCACAACTTCAGGAAATCAAACAACTACATCCA 2229
Query 1933 ATGAAAGCCTAAGACGTACCTTATCACTCATTGAGTCTGAAAGTTTCAGCTTCACGCAAG 1992
|||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 2230 ATGACAGCCTAAGACGTACCTTATCACTCATTGGGTCTGAAAGTTTCAGCTTTACGCAAG 2289
Query 1993 GTCTTAAGGACACGGATCCACAACATTTGCATCTAGAAGAGGGCACTGTCTCCCGAAAAC 2052
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||
Sbjct 2290 GTCTTAAGGACACGGATCCACAACATTTGCATCTCGAAGAAGGCACTGTCTCAGGAAGAC 2349
Query 2053 CTCCATCGCTGAGTGCTTGGGTGGTTGACAAGAACAAAGAGAATGGACGACTCGGTTTAA 2112
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2350 CTCCATCGCTGAGCGCGTGGGTGGTTGACAAGAACAAAGAGAAAGGACGACTCGGTTTAA 2409
Query 2113 GTAAACCAAACGGGTTGGGACCTATTGATGAAACAGGTCCTGTCTCATCCTTTGATAGTC 2172
||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2410 GTAAACCAAACGGATTGGGCCCTATTGATGAAACAGGTCCTGTCTCAGCCTTTGATAGTC 2469
Query 2173 TCTCCATCAGTAACAGCACTGAGCATCCTGCGTTTTCATATTCACCTCCAACTCCGTCTG 2232
||||||||| || |||||| ||||||||||||| ||| ||||| ||||| ||||||||||
Sbjct 2470 TCTCCATCAATAGCAGCACCGAGCATCCTGCGTCTTCCTATTCGCCTCCTACTCCGTCTG 2529
Query 2233 CTCCACTACTGCCTGAAGACGCTTCTTGGTTTCATAATGACGCTAGTACTAACAAAACAG 2292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2530 CTCCACTACTGCCTGAAGACGCTTCTTGGTTTCATAATGACGCTAGTACTAACAAAGCAG 2589
Query 2293 AGAGCTTCTATGACCACAGAAGAAATATGGAACTCTCTGGTTTCATGAAGCCATACACAA 2352
||||||||||||| || | | || ||||||||||| | ||| ||||||||||||||||||
Sbjct 2590 AGAGCTTCTATGATCAGACACGATATATGGAACTCCCCGGTATCATGAAGCCATACACAA 2649
Query 2353 ACCCACCAGTTGTTGGGATTTCTTCTTCTGAATGGTTACGTCGGTACAGAGAAAGTCGGA 2412
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2650 ACCCACCCTTTGTTGGGATTTCTTCTTCTGAATGGTTACGTCGGTACAGAGAAAGTAGGA 2709
Query 2413 ATCTTGGACAAGCTTATTCGTATCAAGCTCAGGGGACAAACGATTTGAGAAACTTTATGG 2472
||||||||| ||| ||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 2710 ATCTTGGACCAGCCTATTCCTATCAAGCTCAGGGAACAAACAATTTGAGAAACTTTATGG 2769
Query 2473 CTCATGGGTCTTCCAAGGTCAGTCT-TTCAGCTAGGTACGGGACACCAAACGACTCTTCT 2531
||||||| ||||||||| ||||||| || |||||||||||||||||||||||| ||||||
Sbjct 2770 CTCATGGCTCTTCCAAGTTCAGTCTCTT-AGCTAGGTACGGGACACCAAACGATTCTTCT 2828
Query 2532 GAAAACTCAACGTT-CTACCCTCAGCTCTACATGGAAGACCATGAATCTAGAGGAGAGAA 2590
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2829 CAAAACTCAACGTTTC-ACCCTCAGCTCTACATGGAAGACCATGAATCTAGAGGAGAGAA 2887
Query 2591 GCTCTGCAAAGGTGAACAATGCACAACAAATGCGTATGGCTTCAGTGATGATCCCGGACC 2650
|||| |||| | | ||||| ||||||||||| | |||||||||||||| |||||||||||
Sbjct 2888 GCTCGGCAACGTTCAACAAAGCACAACAAATCCTTATGGCTTCAGTGACGATCCCGGACC 2947
Query 2651 GTTTCTTAGATTTTTGAGAGAGAAAGACTGGCTGAATGAGAATGGTCAGAGGTTAAGAGG 2710
||||||||||||| ||||||| ||||| |||||||||||||| ||||||||| |||||||
Sbjct 2948 GTTTCTTAGATTTCTGAGAGAAAAAGAGTGGCTGAATGAGAACGGTCAGAGGCTAAGAGG 3007
Query 2711 ACCTTCTCCTGCATATATGAACAACTAAAGATGCACGAGTGAGTGAGTTTACAAGAAACT 2770
|||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 3008 ACCTCCTCCTGCATATATGAACAACTAAAGATGC--GAGTGAGTGAGTTTTCAAGAAACT 3065
Query 2771 GTC-TCAAGTTGGCAAGTTGTGA 2792
||| | |||||| ||||||||||
Sbjct 3066 GTCCT-AAGTTGACAAGTTGTGA 3087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140266772628
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5