BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473036
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28270.1 | Symbols: RALFL4 | ralf-like 4 | chr1:9883038-9883... 1232 0.0
> AT1G28270.1 | Symbols: RALFL4 | ralf-like 4 | chr1:9883038-9883870
FORWARD LENGTH=833
Length=833
Score = 1232 bits (667), Expect = 0.0
Identities = 760/801 (95%), Gaps = 22/801 (3%)
Strand=Plus/Plus
Query 1 CTGCATAATCTCTCATACACTTCTATTTCTCCCTCTCCTTGTCACAAGGAAAGGGCGTAG 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTGCATAATCTCTCACACACTTCTATTTCTCCCTCTCCTTGTCACAAGGAAAGGGCGTAG 60
Query 61 AAGaaaccaaaacctaaacaaaagagtaataataactcattaaaaaaacaaaacaaaaca 120
||| |||||||||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 61 AAG-AACCAAAACCTAAACAAAAGAGCAATAATAACTCATTAAAAAACCAAAAC----CA 115
Query 121 aaaataaacaaaaTGGGTGTCAAGATGTTACTAATCTTTGGTCTCTTGATCTTAGCCATG 180
|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 116 AAAAAAAACAAAATGGGTGTCAAAATGTTATTAATCTTTGGTCTCTTGATCTTAGCTATG 175
Query 181 GTAGCTAAATCCGTCAATGCAACCTACCCATTGACCAAATCTTGCATCAACGGGCAAGGT 240
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 176 GTAGCTAAATCCGTCAATGCAACCTACCCTTTAACCAAATCTTGCATCAACGGGCAAGGT 235
Query 241 TGCATCGGGGAAGATGATGAGCTCGAATCTCTAATGGATTCAGAGACAAACCGTCGTCAA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TGCATCGGGGAAGACGATGAGCTCGAATCTCTAATGGATTCAGAGACAAACCGTCGTCAA 295
Query 301 CTCGCTAGAGGACGCCGTTACATTGGCTATGATGCTCTCAAAAAGAACAATGTGCCTTGC 360
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 296 CTCGCAAGAGGACGTCGTTACATTGGCTACGATGCTCTCAAAAAGAACAATGTGCCTTGC 355
Query 361 AGTAGACGTGGCCGATCTTACTACGATTGCAAGAAGAGAAGAAGGAATAATCCTTATAGG 420
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 356 AGTAGACGTGGCCGATCCTACTACGATTGCAAGAAGAGAAGAAGGAATAATCCTTACAGG 415
Query 421 CGTGGATGCAGTGCCATCACGCATTGCTATAGGTACGCACGCTAAATGATAGAGAGG-A- 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 416 CGTGGATGCAGTGCCATCACGCATTGCTATAGGTACGCTCGCTAAATGATAGAGAGGAAG 475
Query 479 AGATTTGATTCAACAACGTACGTTCG-ATCTTCATTCTTCATTCTTGATCGTTAATATTT 537
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct 476 AGATTTGATTCAACAACGTACGTTCGTATCTTCATTCTTCTTTCTTGATCGTTAATA--T 533
Query 538 TAATTGCCTCTCCTTACTTCCA-C---CttttttttCATTCTTTCTTAACGTATCCTATG 593
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 534 TAATTGCCTCTCCTTACTTCCATCTTTTTTTTTTTTCATTCTTTCTTAACGTATCCTATG 593
Query 594 TTATACGTATGATCTATATATATATTCtttttttttGTTCTTTATTTAATCATCATGATG 653
|||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct 594 TTATACGTATGATC----TATATATTC---TTTTTTGTTCTTTATATAATCATCATGATG 646
Query 654 CATATAAGCTTTTGATTCATTGGTATATCACTT-CTTTTCCTTTGTTGTTGTCCTTTTTT 712
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 647 CATATAAGCTTTTGATTCATTGGTATATCACTTACTTTTCCTTTGTTGTTGTCCTTTTTT 706
Query 713 ATTTCGTTTCGTTCATATAATTAAGTTCCGTTTTGTCTATTATATACATCATGATGTTTT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 ATTTCGTTTCGTTCATATAATTAAGTTCCGTTTTGTCTATTATATACATCATGATGTTTT 766
Query 773 AGTATTTTACAATTAAGCATT 793
|||||||||||||||||||||
Sbjct 767 AGTATTTTACAATTAAGCATT 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5