BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473036 Length=793 Score E Sequences producing significant alignments: (Bits) Value AT1G28270.1 | Symbols: RALFL4 | ralf-like 4 | chr1:9883038-9883... 1232 0.0 > AT1G28270.1 | Symbols: RALFL4 | ralf-like 4 | chr1:9883038-9883870 FORWARD LENGTH=833 Length=833 Score = 1232 bits (667), Expect = 0.0 Identities = 760/801 (95%), Gaps = 22/801 (3%) Strand=Plus/Plus Query 1 CTGCATAATCTCTCATACACTTCTATTTCTCCCTCTCCTTGTCACAAGGAAAGGGCGTAG 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTGCATAATCTCTCACACACTTCTATTTCTCCCTCTCCTTGTCACAAGGAAAGGGCGTAG 60 Query 61 AAGaaaccaaaacctaaacaaaagagtaataataactcattaaaaaaacaaaacaaaaca 120 ||| |||||||||||||||||||||| |||||||||||||||||||| |||||| || Sbjct 61 AAG-AACCAAAACCTAAACAAAAGAGCAATAATAACTCATTAAAAAACCAAAAC----CA 115 Query 121 aaaataaacaaaaTGGGTGTCAAGATGTTACTAATCTTTGGTCTCTTGATCTTAGCCATG 180 |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| Sbjct 116 AAAAAAAACAAAATGGGTGTCAAAATGTTATTAATCTTTGGTCTCTTGATCTTAGCTATG 175 Query 181 GTAGCTAAATCCGTCAATGCAACCTACCCATTGACCAAATCTTGCATCAACGGGCAAGGT 240 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 176 GTAGCTAAATCCGTCAATGCAACCTACCCTTTAACCAAATCTTGCATCAACGGGCAAGGT 235 Query 241 TGCATCGGGGAAGATGATGAGCTCGAATCTCTAATGGATTCAGAGACAAACCGTCGTCAA 300 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 TGCATCGGGGAAGACGATGAGCTCGAATCTCTAATGGATTCAGAGACAAACCGTCGTCAA 295 Query 301 CTCGCTAGAGGACGCCGTTACATTGGCTATGATGCTCTCAAAAAGAACAATGTGCCTTGC 360 ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 296 CTCGCAAGAGGACGTCGTTACATTGGCTACGATGCTCTCAAAAAGAACAATGTGCCTTGC 355 Query 361 AGTAGACGTGGCCGATCTTACTACGATTGCAAGAAGAGAAGAAGGAATAATCCTTATAGG 420 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 356 AGTAGACGTGGCCGATCCTACTACGATTGCAAGAAGAGAAGAAGGAATAATCCTTACAGG 415 Query 421 CGTGGATGCAGTGCCATCACGCATTGCTATAGGTACGCACGCTAAATGATAGAGAGG-A- 478 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 416 CGTGGATGCAGTGCCATCACGCATTGCTATAGGTACGCTCGCTAAATGATAGAGAGGAAG 475 Query 479 AGATTTGATTCAACAACGTACGTTCG-ATCTTCATTCTTCATTCTTGATCGTTAATATTT 537 |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | Sbjct 476 AGATTTGATTCAACAACGTACGTTCGTATCTTCATTCTTCTTTCTTGATCGTTAATA--T 533 Query 538 TAATTGCCTCTCCTTACTTCCA-C---CttttttttCATTCTTTCTTAACGTATCCTATG 593 |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 534 TAATTGCCTCTCCTTACTTCCATCTTTTTTTTTTTTCATTCTTTCTTAACGTATCCTATG 593 Query 594 TTATACGTATGATCTATATATATATTCtttttttttGTTCTTTATTTAATCATCATGATG 653 |||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| Sbjct 594 TTATACGTATGATC----TATATATTC---TTTTTTGTTCTTTATATAATCATCATGATG 646 Query 654 CATATAAGCTTTTGATTCATTGGTATATCACTT-CTTTTCCTTTGTTGTTGTCCTTTTTT 712 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 647 CATATAAGCTTTTGATTCATTGGTATATCACTTACTTTTCCTTTGTTGTTGTCCTTTTTT 706 Query 713 ATTTCGTTTCGTTCATATAATTAAGTTCCGTTTTGTCTATTATATACATCATGATGTTTT 772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 ATTTCGTTTCGTTCATATAATTAAGTTCCGTTTTGTCTATTATATACATCATGATGTTTT 766 Query 773 AGTATTTTACAATTAAGCATT 793 ||||||||||||||||||||| Sbjct 767 AGTATTTTACAATTAAGCATT 787 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38579824896 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5