BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473040
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28300.1 | Symbols: LEC2 | AP2/B3-like transcriptional facto... 1925 0.0
> AT1G28300.1 | Symbols: LEC2 | AP2/B3-like transcriptional factor
family protein | chr1:9896867-9899876 REVERSE LENGTH=1317
Length=1317
Score = 1925 bits (1042), Expect = 0.0
Identities = 1227/1312 (94%), Gaps = 30/1312 (2%)
Strand=Plus/Plus
Query 1 tctctctctctctctctcCCTGAAAAATGGATAACTTCTTGCCCTTTTCCTCTTCTAACG 60
||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct 13 TCTCTCTCTCTCTCTCTCCGGGAAAAATGGATAACTTCTTACCCTTTCCCTCTTCTAACG 72
Query 61 CAAACTCTGTCCAAGAACTCTCTATGGATCTTAACAACAATCGTTCGCACTTCACAACGG 120
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 73 CAAACTCTGTCCAAGAACTCTCTATGGATCCTAACAACAATCGCTCGCACTTCACAACAG 132
Query 121 TCCCTACTTATGATCA-C--CTGGCTCAGCCTCATCACTTGATGCCGCC-TTATTCATAC 176
|||||||||||||||| | | |||||||||||||||||| |||| || || |||||||
Sbjct 133 TCCCTACTTATGATCATCATCAGGCTCAGCCTCATCACTTCTTGCCTCCGTT-TTCATAC 191
Query 177 CCGGTGGAGCAGATGACGGCGGTGACGAATCCGCAGCCGGTTTACTTCTCGGAGGGTTAT 236
||||||||||||||| ||||||||| |||||| |||||||||||||| |||||| |||||
Sbjct 192 CCGGTGGAGCAGATGGCGGCGGTGATGAATCCTCAGCCGGTTTACTTATCGGAGTGTTAT 251
Query 237 CCTCAGATCCCGGTTACGAAAACCGGAAGTGAATTCGGTTCTCTGGTTGGTAATCCTTGT 296
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CCTCAGATCCCGGTTACGCAAACCGGAAGTGAATTCGGTTCTCTGGTTGGTAATCCTTGT 311
Query 297 TTGAGGCAAGAGAGAGGTGGTTTTCTTGATCCGCGTATGACGAAGATGGCAAGGATCAAC 356
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TTGTGGCAAGAGAGAGGTGGTTTTCTTGATCCGCGTATGACGAAGATGGCAAGGATCAAC 371
Query 357 A-GAAAGAACGCGATGATCAGATCAAGAAACAACTCTAGCCCTAATTCCAGTCCAAGTGA 415
| |||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 372 AGGAAA-AACGCCATGATGAGATCAAGAAACAACTCTAGCCCTAATTCTAGTCCAAGTGA 430
Query 416 GTTGGTTGATTCAAAGAGACAGGTGATGATGCTTAACTTGAAAAATAACGTGCAGATCTC 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 431 GTTGGTTGATTCAAAGAGACAGCTGATGATGCTTAACTTGAAAAATAACGTGCAGATCTC 490
Query 476 CGACAAAAAAGATAGCTACCAACAGTCCACATTTGATAACAAGAAGCTTAGGGTTTTGTG 535
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CGACAAGAAAGATAGCTACCAACAGTCCACATTTGATAACAAGAAGCTTAGGGTTTTGTG 550
Query 536 TGAGAAGGAATTGAAGAACAGCGATGTTGGGTCACTCGGGAGGATAGTTTTACCAAAGAG 595
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 551 TGAGAAGGAATTGAAGAACAGCGATGTTGGGTCACTCGGGAGGATAGTTCTACCAAAGAG 610
Query 596 AGATGCAGAAGCAAATCTTCCGAAGTTATCTGATAAAGAAGGAATCGTTCTAGAGATGAG 655
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 611 AGATGCAGAAGCAAATCTTCCGAAGCTATCTGATAAAGAAGGAATCGTTGTACAGATGAG 670
Query 656 AGATGTTTTCTCTATGCAGTCTTGGTCTTTCAAATACAAGTTTTGGTCCAATAACAAGAG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 AGATGTTTTCTCTATGCAGTCTTGGTCTTTCAAATACAAGTTTTGGTCCAATAACAAGAG 730
Query 716 CAGAATGTATGTCCTCGAGAACACAGGAGAATTTGTGAAGCAAAATGGAGCAGAGATGGG 775
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 731 CAGAATGTATGTCCTCGAGAACACAGGAGAATTTGTGAAGCAAAATGGAGCTGAGATAGG 790
Query 776 AGACTTTTTAACAATATACGAGGACGAAAGCAAGAATCTCTACTTCGCCATTAATGGGAA 835
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 791 AGACTTTTTAACAATATACGAGGACGAAAGCAAGAATCTCTACTTCGCCATGAATGGAAA 850
Query 836 TTCGGGAAAACAAAATGAAGGAAGAGAAAATGAGTCGAGGGAAAGAAACCACTACGAAGA 895
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 851 TTCGGGAAAACAAAATGAAGGAAGAGAAAATGAGTCGAGGGAAAGGAACCACTACGAAGA 910
Query 896 CACAATGCTTGATTACATATCAAGAGACGAAGAGGAAGCTTCCATTGCAATGCTCATCGG 955
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GGCAATGCTTGATTACATACCAAGAGACGAAGAGGAAGCTTCCATTGCAATGCTCATCGG 970
Query 956 AAATCTAAATGATCACTATCCCATCCCTAACGATCTCATGGACCTCGCCACTGATCTTCA 1015
||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 971 AAATCTAAACGATCACTATCCCATCCCTAACGATCTCATGGACCTCACCACTGACCTTCA 1030
Query 1016 GTACCATCAAGCCACGTCCTCAG---TGCCACCTGAGGATCACGCGTACATGGGTTCGTC 1072
| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 1031 GCACCATCAAGCCACGTCCTCATCAATGCCACCTGAGGATCACGCGTACGTGGGTTCATC 1090
Query 1073 CGATGATCAAGTGAGCTTTAACGACTTTGAGTGGTGGTGATATGGTGG---AAGTTCTCA 1129
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1091 CGATGATCAGGTGAGCTTTAACGACTTTGAGTGGTGGTGATATGGTGGTGGAAGTTCTCA 1150
Query 1130 AGTTCATATAGCTACCCCCTTATGAAAATAGACCTTAAGATATACAAGAGAGATTAAAAG 1189
|||||||| | | |||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1151 AGTTCATA-A-C--CCCCTTTATGAAAATAGACCTTAAGATATACAAAAGAGATTAAAAG 1206
Query 1190 AAAAAGA--T-AGTATATTTCATCGTATC-CGAGATATTCAACATGAGATTCATATCTAT 1245
||||| | | ||||||||||||| |||| | || | || |||||||| ||||||||
Sbjct 1207 AAAAAAAAGTTAGTATATTTCATCATATCTCTC-AT-TG-AAGATGAGATTTATATCTAT 1263
Query 1246 AATTGCTTTATAGAGTGTTTTTATTAATT----ATCAATGTATTAAAGTTTT 1293
||||| |||| | ||||||||||||| || |||||| ||||||||||||
Sbjct 1264 AATTG-TTTA-ATAGTGTTTTTATTACTTTTCTATCAATATATTAAAGTTTT 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5