BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473046
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28330.5 | Symbols: DYL1 | dormancy-associated protein-like ... 545 2e-154
> AT1G28330.5 | Symbols: DYL1 | dormancy-associated protein-like
1 | chr1:9933922-9935271 REVERSE LENGTH=865
Length=865
Score = 545 bits (295), Expect = 2e-154
Identities = 361/390 (93%), Gaps = 15/390 (4%)
Strand=Plus/Plus
Query 1 GTTTCACTGTCTACAAAATCATTGAAGAGC-AACC------aaaaaaaaa-aGATGGTTC 52
|||||||||||||||||||||||||||| | | || ||||||||| |||||||||
Sbjct 3 GTTTCACTGTCTACAAAATCATTGAAGATCTACCCAAAAAAAAAAAAAAAGAGATGGTTC 62
Query 53 TGCTAGAGAAGCTTTGGGATGATGTTGTGGCTGGACCTCAGCCTGACCGTGGCCTTGGCC 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TGCTAGAGAAGCTTTGGGATGATGTTGTGGCTGGACCTCAGCCTGACCGTGGCCTTGGCC 122
Query 113 GCCTCCGTAAGATCACCACCCAACCCATTAATATCAGAGATATAGGAGAAGGGAGCAG-- 170
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 123 GCCTCCGTAAGATCACCACCCAACCCATTAATATCCGAGATATAGGAGAAGGGAGCAGCA 182
Query 171 -TAAGGTG---ATGCATAGGTCGTTGACCATGCCGGCGGCAGTGAGCCCCGGAACTCCGA 226
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 183 GTAAGGTGGTGATGCATAGGTCGTTGACCATGCCGGCGGCAGTGAGCCCTGGAACTCCAA 242
Query 227 CGACCCCGACCACTCCGACCACTCCACGTAAGGATAACGTGTGGAGGAGTGTCTTTAATC 286
|||| || ||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 243 CGACTCCAACCACTCCGACGACGCCACGTAAGGATAACGTGTGGAGGAGCGTCTTTAATC 302
Query 287 CGGGAAGCAACCTCGCCACTAGAGCTATCGGCTCCAACATATTCGATAAACCCACCCATC 346
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 303 CGGGAAGCAACCTCGCCACTAGAGCCATCGGCTCCAACATCTTTGATAAACCCACCCATC 362
Query 347 CAAATTCTCCATCCGTCTACGACTG-GTTG 375
|||||||||| |||||||||||||| ||||
Sbjct 363 CAAATTCTCCCTCCGTCTACGACTGCGTTG 392
Score = 514 bits (278), Expect = 5e-145
Identities = 351/383 (92%), Gaps = 17/383 (4%)
Strand=Plus/Plus
Query 371 GGTTGTACAGTGGTGAGTCAAGGAGTCAGCACCGTTAGGGATGGTCCGATGGAGTGTGAC 430
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GGTTGTACAGCGGTGACTCAAGGAGTCAGCACCGTTAGGGATGGTCCGATGGAGTGTGAC 557
Query 431 ATGCGGGTGATGTAAATATGGTGACCAGATCTTCCGCCACCTTACttttttttttttttA 490
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 558 ATGCGGGTGATGTAAATATGGTGACCTGATCTTCCGCCACCTTACTTTGTTTTTTTTATA 617
Query 491 CTGTGTTTGTGTACTTTATCAGAGTGGATAAAGTGACGAGGGA-TGCTTTTCTTTTGTGC 549
||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||| |
Sbjct 618 TTGTTTTTGTGTACTTTATCAGAGTGGATAAAGTGACG-GGGAATGTTTTTCTTTTGTAC 676
Query 550 ATAAAACTGTCT-CCCACCTGGCACCTATGCAATGTGTATTAgtttctgttttgggctgt 608
| |||||||||| ||||||| | | ||||||||| |||||||||||||||||||||
Sbjct 677 AAAAAACTGTCTTCCCACCT---A---A-GCAATGTGTGTTAGTTTCTGTTTTGGGCTGT 729
Query 609 gttttgcaagttttttctttttgtattttAGAGTTGTGTAGTGTAGTTGCAAGTGGCGGT 668
||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 730 GTTTTGCAAGTTTTT-------GTATTTCAGAGTTGTGTAGTGTAGTTGCAAGTGGCGGT 782
Query 669 TGGATCTTTCACTATCTTGTTGGATTTTGATGATGGTTGATGCGTTTGCTTTAATGTTCA 728
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 783 TGGATCTTTCACTATCTTGTTGGATTTTGATGATGGTTGATGCTTTTGCTTTAATGTTAA 842
Query 729 ATAAATAAGCATATTTTTGCTAG 751
||||||||||||| |||||||||
Sbjct 843 ATAAATAAGCATACTTTTGCTAG 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5