BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473050
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28360.1 | Symbols: ERF12, ATERF12 | ERF domain protein 12 |... 822 0.0
> AT1G28360.1 | Symbols: ERF12, ATERF12 | ERF domain protein 12
| chr1:9951848-9952740 FORWARD LENGTH=893
Length=893
Score = 822 bits (445), Expect = 0.0
Identities = 591/656 (90%), Gaps = 31/656 (5%)
Strand=Plus/Plus
Query 2 CAACAAAGCAAAACctctttcttctcttctcctttcactctctctagattctctc--gtt 59
|||||||||||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 8 CAACAAAGCAAAACCTCTTTCTTCTCTTCTCC--ACTTTCTCTCTAGATTCTCTCATATT 65
Query 60 t--cctc-tGAGATTGTAACAATGGCGTCTACGACGTGTGCAAGAGAGGTGCATTACAGA 116
| |||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 66 TCCCCTCTTGAGAGTCTAACAATGGCGTCAACGACGTGTGCAAGAGAGGTGCATTACAGA 125
Query 117 GGAGTAAGAAAGAGACCATGGGGTCGTTACGCTGCTGAGATAAGAGATCCTTGGAAGAAA 176
||||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 126 GGAGTCAGAAAGAGACCTTGGGGTCGCTACGCTGCTGAGATACGAGATCCTTGGAAGAAA 185
Query 177 ACTAGGGTTTGGTTAGGCACTTTCGACACTCCCGAAGAAGCCGCTCTTGCTTACGACGGC 236
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 186 ACTAGGGTTTGGTTAGGCACTTTCGACACTCCCGAAGAAGCTGCTCTTGCTTACGACGGC 245
Query 237 GCTGCTCGTTTCCTCCGTGGTATCAAAGCCAAAACTAACTTCCCTTCTCCTCTCTCTCTG 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GCTGCTCGTTTCCTCCGTGGTATCAAAGCCAAAACTAACTTCCCTTCTCCTCTCTCTCTC 305
Query 297 GACCTCAACCACCTCCCTTCCGCTCCCTC--CC-C--C-GCCGC---AAATAACCAAC-- 345
||||||||||||||||||||||||||||| || | | ||||| |||||||||||
Sbjct 306 GACCTCAACCACCTCCCTTCCGCTCCCTCAGCCGCAACCGCCGCCGCAAATAACCAACCC 365
Query 346 -ACCAACA------GCTCTGGTTCGCCGCGcctcctcctcctcctcctc-ctccAATC-T 396
||||||| |||||||||||| |||||||||||| |||||| |||| | | |
Sbjct 366 CACCAACACCAACAGCTCTGGTTCGCTGCGCCTCCTCCTGTTCCTCCAAGCTCCGACCAT 425
Query 397 CCGACCACCATCACCAACGGATATTTCTCCGAACCGGTGTGCTAAACGACAAAAATTCAG 456
| | ||||| ||||| || || ||||||||||||||||||||||||||||||| |||||
Sbjct 426 C--ATCACCAACACCACCGCATTTTTCTCCGAACCGGTGTGCTAAACGACAAAACTTCAG 483
Query 457 ATTACTCCTCTACCGAAGCGCCGCTTTACTTCACCTCCTCGCCTAACGCAGCCACGTCGT 516
||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 484 ATTACTCTTCTACAGAAGCGCCGCTTTACTTCACCTCCTCGCCTAACACAGCCACGTCAT 543
Query 517 CGCCTGGTTATCAAGTGGTTGGGTTTCCGATGATGAGTTCGTCTCCATCCCCTGTTACGG 576
|||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 544 CGCCTGGTTATCAAGTGGTTGGGTTTCCGATGATGAATTCTTCTCCTTCCCCTGTTACGG 603
Query 577 TGAGACGTGGGCT-AGCCATTGACCTCAACGAGCCTCCGCCGCTTTGGCTGTGAAA 631
|||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 604 TGAGACGTGG-CTTAGCCATTGACCTCAACGAGCCTCCGCCGCTTTGGCTTTGAAA 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30441893082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5