BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473051
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28370.1 | Symbols: ERF11, ATERF11 | ERF domain protein 11 |... 1013 0.0
> AT1G28370.1 | Symbols: ERF11, ATERF11 | ERF domain protein 11
| chr1:9955969-9956940 REVERSE LENGTH=972
Length=972
Score = 1013 bits (548), Expect = 0.0
Identities = 772/871 (89%), Gaps = 51/871 (6%)
Strand=Plus/Plus
Query 1 TTTCTTACATAAACAAtttttgttttttGTTGTTGTCATGACGCCGACAGTTAAAACGGC 60
|||||||||||||||| | ||||| ||||||||||||||| | |||||||||||||||||
Sbjct 53 TTTCTTACATAAACAAATCTTGTTGTTTGTTGTTGTCATGGCACCGACAGTTAAAACGGC 112
Query 61 GGCAGTCAAAACCAACGACGGTAACGGAGTCCGTTACAGAGGAGTGAGGAAGAGACCATG 120
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 113 GGCCGTCAAAACCAACGAAGGTAACGGAGTCCGTTACAGAGGAGTGAGGAAGAGACCATG 172
Query 121 GGGACGTTACGCAGCCGAGATCAGAGATCCTTTCAAGAAGTCACGAGTCTGGCTCGGTAC 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 173 GGGACGTTACGCAGCCGAGATCAGAGATCCTTTCAAGAAGTCACGTGTCTGGCTCGGTAC 232
Query 181 TTTCGACACTCCTGAAGCAGCGGCTCGTGCCTACGACAAACGTGCTATTGAGTTTCGTGG 240
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 233 TTTCGACACTCCTGAAGAAGCCGCTCGTGCCTACGACAAACGTGCTATTGAGTTTCGTGG 292
Query 241 AGCCAAAGCCAAAACCAATTTCCCTTATTACAGCAACAA---CCAGAGCTTGAGTTTGAG 297
||| |||||||||||||| ||||||| ||||| || ||| ||| ||||||||||||
Sbjct 293 AGCTAAAGCCAAAACCAACTTCCCTTGTTACAACATCAACGCCCACTGCTTGAGTTTGA- 351
Query 298 CCAGAGCCAGAGCCTGAGCCAGAGCAGCACCGTGGAATCATCGATTCCGGCTCTCAACCT 357
| | |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 352 -C--A--CAGAGCCTGAGCCAGAGCAGCACCGTGGAATCATCGTTTCCTAATCTCAACCT 406
Query 358 CGGATCTGACTCTGTTAGTTCGAGATTCCCTTTTCCTAAGATTCAGGTTAAGGCTGGGAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CGGATCTGACTCTGTTAGTTCGAGATTCCCTTTTCCTAAGATTCAGGTTAAGGCTGGGAT 466
Query 418 GATGGTGGTT-GATGAAAGGAGTGAATCGGAATCGTCGTCGGTGGTGATGGAT--C-TTA 473
||||||| || |||||||||||||||||||| || |||||||||||||||||| | |||
Sbjct 467 GATGGTG-TTCGATGAAAGGAGTGAATCGGATTCTTCGTCGGTGGTGATGGATGTCGTTA 525
Query 474 GCTATGAAGGACGACGTGTGGTTTTGGACTTGGATCTAAATTTTCCTCCTCCACCTGAGA 533
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 526 GATATGAAGGACGACGTGTGGTTTTGGACTTGGATCTTAATTTCCCTCCTCCACCTGAGA 585
Query 534 ACTAAT-A---TTTAATTATGATTATTAGATATAATTAAATGTTTCTGAATTGAGTACTA 589
||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 586 ACTGATTAAGATTTAATTATGATTATTAGATATAATTAAATGTTTCTGAATTGAGTATTA 645
Query 590 TTTGATCATCA---AAGTAGAAGCTTTTAATTTTAAGTT-T---ATGTAAGTGGTGCCAA 642
||||||||||| ||||||||||||| || ||||||| | | ||| | |
Sbjct 646 TTTGATCATCATCTAAGTAGAAGCTTT-AAGTTTAAGTGGTGCCAA-TAATTTTTTTTTT 703
Query 643 TTTTT--G-TCATCAGCAGA-A-TTTAAAAGAATTTTT-AGTGTTGAGATCGTGTTTTGT 696
||||| | ||||||||||| | ||| ||||||||||| |||||||||||||||||| ||
Sbjct 704 TTTTTTTGGTCATCAGCAGATAGTTTTAAAGAATTTTTTAGTGTTGAGATCGTGTTTCGT 763
Query 697 TCCA-ATCTGCTGAT---CATT-AA-T-T-AT-AAT--T---C-TGATCAACTAAAATAA 741
|| | |||||||||| | || || | | || ||| | | |||||||||||||| |
Sbjct 764 TC-AGATCTGCTGATGTTCTTTTAAATATCATTAATGATAATCCTGATCAACTAAAATGA 822
Query 742 TACCTTGTTTTGGCATTGATCTCTCTGATGAACATATATGGTTGTTGATCTTATGATTTT 801
||| ||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||
Sbjct 823 TACTTTGTTTTGGTATTAATCTCTCTGATGAACATATAAGGTTGTTGATCTTATGTTTTT 882
Query 802 TATCC-ATATCCAATTGGATTTGAGGAAATA 831
|| || |||||||||||||||||||||||||
Sbjct 883 TA-CCTATATCCAATTGGATTTGAGGAAATA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5