BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473052
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28375.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 874 0.0
> AT1G28375.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf
whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; Has 8 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:9961055-9961703 FORWARD LENGTH=649
Length=649
Score = 874 bits (473), Expect = 0.0
Identities = 593/647 (92%), Gaps = 23/647 (4%)
Strand=Plus/Plus
Query 1 GCTAGTTTCATAATTACACAAAAACATTAATTCAACAAGATATGAGCTGTAATCCTTTAT 60
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GCTAGTTTCATAATTATACAAAAACATTAATTTAACAAGATATGAGCTGTAATCCTTTAT 60
Query 61 GTAATCTGTTTTTAAATAGCTCAAAATAGGTAGGAGCATCATGCAGATCGTAAGAGTTTT 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 GTAATCTGTTTTTAAATAGCTCAAAATAAGTAGGAGCATCATGCAGATCGTAAGAGTTTT 120
Query 121 -AATGATAATGCGTCTTCATGTTTCTAGCATGTCTATGGTTCTCATAACTACCTTCATGA 179
| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 121 GGA-GATTATGCGTCTTCATGTTTCTAACATGTCTATGGTTCTCATAACTACCTTC--G- 176
Query 180 TTATCGTCATTATCTCCACCGTAATGGCAAGACCCTCTATCTCTACGAACAAATTTCAAT 239
||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 177 TTATCGTCATTTTCTCGACCGTAATGGCAAGACCTTCTATCTCTACGAACAAATCTCCAT 236
Query 240 CTCAAGATTTAGATCCTTCGTTTAGGGTTAAATCCAAGAGCTTTTTACCAAAGCTGTATG 299
||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 237 CTCTAGATTTAGATCCTTCGTTTAGGGTGAAATCCAAGAGCTTTTTACCAAAGTTGTATG 296
Query 300 GCGACTACGGGTTTTGGAATCCAAGCCCGGTTTACGGAGGAGGTTTTCCTTATCCCGGGC 359
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCGATTATGGGTTTTGGAACCCAAGCCCGGTTTACGGAGGAGGTTTTCCTTATCCCGGGC 356
Query 360 CAGTTCCTCATGGCAGTCTAGGTCCAAAACAGAGACATAAGAAGCCGAAATGAAACCGGA 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 357 CAGTTCCTCATGGCAGTCTAGGTCCAATACAGAGACATAAGAAGCCGAAATGAAACCGGA 416
Query 420 AGACATGTTGGAT---ATGTTCTTCGACTTTGCTACTTACGGGTAAAGCTTTTGATATAT 476
||| ||||||||| ||||||||| |||||||||||||| |||||| ||||||| ||||
Sbjct 417 AGATATGTTGGATTGGATGTTCTTCAACTTTGCTACTTACAGGTAAAACTTTTGACATAT 476
Query 477 G--TGTTGTATAAATAACGTAGTGCTAATTAAGGCTTGTATATGTACTTACTGCATACGA 534
| |||||||||||||| |||||||| ||||| |||||| || |||||||||||||| ||
Sbjct 477 GGGTGTTGTATAAATAAGGTAGTGCTGATTAAAGCTTGTGTAGGTACTTACTGCATATGA 536
Query 535 ATAATGTC-TTCGTTTGTGTATTGTAGTAGATACAAATAGTtatatatatatataCACAT 593
|||||||| || |||| ||| |||||||||||||||||||||||||||||| |||||
Sbjct 537 ATAATGTCATT-GTTTATGTTTTGTAGTAGATACAAATAGTTATATATATA----CACAT 591
Query 594 CTTGTTCCACTCTCTACTCTTTAGATAAACCATGTATGTGTAGTATA 640
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 592 CTTGTTCCACTCTCTA-------GATAAACCATGTATGTGTAGTATA 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5