BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473053
Length=2205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28380.1 | Symbols: NSL1 | MAC/Perforin domain-containing pr... 3404 0.0
AT1G28390.2 | Symbols: | Protein kinase superfamily protein | ... 169 1e-40
> AT1G28380.1 | Symbols: NSL1 | MAC/Perforin domain-containing
protein | chr1:9963593-9966320 FORWARD LENGTH=2202
Length=2202
Score = 3404 bits (1843), Expect = 0.0
Identities = 2096/2216 (95%), Gaps = 25/2216 (1%)
Strand=Plus/Plus
Query 1 ACCGTTGACCACTTCAATGGCTTCGCGCTCGCCTTCTTCTTCTTCTTCACCACACAAAGC 60
|||||||||||||||||| ||||||||| | ||||||||||| ||||||||| |||
Sbjct 1 ACCGTTGACCACTTCAATACCTTCGCGCT--TC-TCTTCTTCTTCACCACCACACACAGC 57
Query 61 CACAATCTTTTGAATTTTCCTCATCATCATCATC-TCTCTCTCCGATCCATGGCCTTTAA 119
|||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 58 CACAATCTTTTGAATTTTCCTC--C-TCATCATCGTCTCTCTCCGATCCATGGCCTTTAA 114
Query 120 CAATTTCACACGCCTCGATGCTCAATCCGCCGCCGTGAAAGCCGTCTCAGTGATCGGATT 179
||||||||| |||||||||||||| |||||||||| |||||||||||| || ||||||||
Sbjct 115 CAATTTCACCCGCCTCGATGCTCACTCCGCCGCCGAGAAAGCCGTCTCTGTAATCGGATT 174
Query 180 AGGTTACGATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACCACACCTGACGGTTC 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 175 AGGTTACGATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACCACACCCGACGGTTC 234
Query 240 CAGGTTAGTCGAAATCGACCCGACCCGGAACCGTGACTTAGTCTTCCCCGGTGGGATCGT 299
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 235 CAGGTTAGTCGAAATCGACCCGACTCGGAACCGTGACTTAATCTTCCCCGGTGGTATCGT 294
Query 300 CGTTAATAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACTCGATTACGCTC 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACTCGATTACGCTC 354
Query 360 CGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGG 414
Query 420 GAAGATTCCGTCGGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGTTGGCCAAAAGA 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGTTGGCCAAAAGA 474
Query 480 TGCGAGCTCTGTCAAGAATTTAGCTTATGATGGTTGGTTCATTAGCTTGTATAGTGTTGA 539
|||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 475 TGCGAGCTCTGTTAAGACTTTAGCTTATGATGGTTGGTTTATTAGTTTGTATAGTGTAGA 534
Query 540 GCTTGTTAGGAAGCAATTGACGTTACGTGATGAAGTGAAACGTGAGGTTCCTTCTTCTTG 599
| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 535 GATTGTTAGGAAGCAGTTGACACTACGTGATGAAGTGAAACGTGAGGTTCCTTCTTCTTG 594
Query 600 GGACTCTGCTTCACTTGCTGGGTTTATTGAGAAATATGGTACTCATGTAGTTGTTGGAGT 659
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 595 GGACTCTGCTGCACTTGCTGGGTTTATTGAGAAATATGGTACTCATGTTGTTGTTGGAGT 654
Query 660 GACTATGGGAGGTAAAGATGTCATTCATGTGAAGCAGATGCGTAAATCGAATCACGAACC 719
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 655 GACTATGGGAGGTAAAGATGTCATTCATGTGAAACAGATGCGTAAATCGAATCATGAGCC 714
Query 720 TGATGAAATTCAGAAATTGTTGAAGCGTTGGGGTGATGATAGATTTTGTGTTGATCCTGT 779
||| |||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 715 TGAGGAAATTCAGAAAATGTTGAAGCATTGGGGTGATGAAAGATTTTGTGTTGATCCTGT 774
Query 780 TGAAAGTAGATCTCCTGCTTCTGTTTATTCCGGGAAGCCAAAGGAGGAGAATCTTC-ATC 838
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 775 TGAAAGTAAATCTCCTGCTTCTGTTTATTCAGGGAAGCCAAAGGAGGAGAATCTTCTA-C 833
Query 839 AATGGGGACTTCAACCGTTTGGTACCTCGGTTAGCTCTGCTGTTGTCACGCACACCAAGA 898
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 834 AATGGGGACTTCAACCGTTTGGTACCTCGGTTAGCTCTGCTGTTGTCATGCATACCAAGA 893
Query 899 ACGAGGAGATTGTGAGGGTTTGTATCAGAAGAGGAGGTGTTGATCTGGGGCAAAGTCATG 958
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ACGAGGAGATTATGAGGGTTTGTATCAGAAGAGGAGGTGTTGATCTGGGGCAAAGTCATG 953
Query 959 AACGATGGCTCTCAACAGTATCACAATCACCCAACGTCATATCCATGTGTTTTGTTCCTA 1018
|||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 954 AACGATGGCTCTCAACAGTATCACAAGCACCCAACGTTATATCGATGTGTTTTGTTCCTA 1013
Query 1019 TAACTTCACTCTTGAGCGGTCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTAT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TAACTTCACTCTTGAGCGGTCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTAT 1073
Query 1079 ACCTCCGATATAAGCCACCGATAGAAGAGTTGCATCAATTTCTTGAGTTTCAACTTCCAC 1138
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1074 ACCTCCGATATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCAC 1133
Query 1139 GCCAATGGGCTCCGGTGTATGGAGATCTCCCTCTTGGACTACGCCGCTCAAAACAAAGTT 1198
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1134 GCCAATGGGCTCCAGTGTATGGAGATCTCCCTCTTGGACTACGCCGCTCGAAACAAAGTT 1193
Query 1199 CTCCATCCCTTCAGTTCTCTTTGATGGGTCCAAAACTATACGTCAACACATCAAAGGTTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CTCCATCCCTTCAGTTCTCTTTGATGGGTCCAAAACTATACGTCAACACATCAAAGGTTG 1253
Query 1259 ATTCAGGTGAGCGACCAGTAACCGGACTACGCTTCTTCCTTGAGGGGAAGAAAGGAAATC 1318
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1254 ATTCAGGTGAGCGACCAGTAACCGGACTACGCTTCTTCCTTGAGGGAAAGAAAGGAAATC 1313
Query 1319 ATCTAGCTATACATTTGCAGCACCTCTCTGCATGTCCTCCAAGTCTCCATCTCTCACACG 1378
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ATCTAGCAATACATTTGCAGCACCTCTCTGCATGTCCTCCAAGTCTCCATCTCTCACACG 1373
Query 1379 ATAAAACCTATGAACCCATCGATGAACCACCTGAAAAAGGGTATTATGTACCTGTGAAAT 1438
|| | ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1374 ATGACACCTATGAACCCATCGAGGAACCAGTTGAAAAAGGGTATTATGTACCTGTGAAAT 1433
Query 1439 GGGAAATATTCTCACATGTTTGCACCTTCCCAGTTCAGTACAACGGAGCACGGTCTGATG 1498
||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1434 GGGGAATATTCTCACACGTTTGCACCTACCCAGTTCAGTACAACGGAGCACGGTCTGATG 1493
Query 1499 AAACCGCCTCTATCGTAACCAAAGCCTGGTTAGAAGTCAAAGGAATCGGGATGAGGAAAG 1558
| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1494 ACACCGCCTCTATTGTAACCAAAGCCTGGTTAGAAGTGAAAGGAATGGGGATGAGGAAAG 1553
Query 1559 TTCTCTTCTTGAGGCTCGATTTCTCGC-ACGATGCTTCAGCTGTTACACGTAAATCGTGC 1617
|||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||
Sbjct 1554 TTCTCTTCTTGAGGCTCGGTTTCTCACTA-GATGCTTCAGCTGTTACACGTAAATCGTGC 1612
Query 1618 TGGGATAATCTTTCAGCAAACTCGCGCAAATCGGGTGTTTTCTCGATGATTAGTACAAGA 1677
||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1613 TGGGACAATCTTTCAACAAACTCGCGCAAATCCGGTGTTTTCTCGATGATCAGTACAAGA 1672
Query 1678 TTAAGCACGGGTTTAAGTCCAAACCCGGCAACAACGAAGCCACAGTCTAAGATTGATATA 1737
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1673 CTAAGCACGGGATTAAGTCCAAACCCGGCAACAACTAAGCCACAGTCTAAGATTGATATA 1732
Query 1738 AACTCTGCGGTGTATCCTAGAGGGCCATCGCCGCCTGTGAAACCAAAGCTGCTGAGTCTT 1797
|||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1733 AACTCTGCAGTGTATCCTAGAGGGCCATCACCGCCTGTGAAACCAAAGTTGCTGAGTCTT 1792
Query 1798 GTAGACACGAAGGAGGTGATGAGAGGTCCAGAGGAACAACCTGGATATTGGGTTGTGACT 1857
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 GTAGACACGAAGGAAGTGATGAGAGGTCCAGAGGAACAACCTGGATATTGGGTTGTGACT 1852
Query 1858 GGGGCTAAACTTTGTGTTGAGGCAGGGAAGATCTCAATCAAAGCTAAATACTCTCTGCTT 1917
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1853 GGTGCTAAACTTTGTGTTGAGGCAGGCAAGATCTCAATCAAAGCTAAATACTCTCTGCTC 1912
Query 1918 ACTGTCATATCGGAAGACTCGCTGGTCTGAGAGTTTCATTCATTGAGTTCCGAAGGACAG 1977
|||||||||||||||||||| |||||||||||| |||||| ||| |||||| || |||||
Sbjct 1913 ACTGTCATATCGGAAGACTCACTGGTCTGAGAGATTCATTTATTCAGTTCCAAATGACAG 1972
Query 1978 GGAGGGGTGTCTATGT-GAGGAACACAAGTGTAgtgtgtgtgtgtTGGCTTTTTG-CAGG 2035
||||||||||||| || ||| ||||||||||||||||| |||| | || |||| | |||
Sbjct 1973 GGAGGGGTGTCTAAGTAGAG-AACACAAGTGTAGTGTGCGTGT-T-GGATTTT-GACAGA 2028
Query 2036 TTTCAGTTTGTGATTAGCTTTAATCAGGTGTTTTTGGTTTGTGAACAAAATTTATTTATC 2095
||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 2029 TTTCAGTTTGTGATTAGCTTTAATCAGTTGTTTTTGGGTTGTGAACAAA-TTTATTTATC 2087
Query 2096 TGTTGATGTAAATGTTTCGTTGTATATGATGTT-T--A-TTTTACATAATAGTATAT--G 2149
|||||||||||||||||||||||||||||| || | | ||||||||| |||||||| |
Sbjct 2088 TGTTGATGTAAATGTTTCGTTGTATATGATATTGTTGAATTTTACATA-TAGTATATATG 2146
Query 2150 TATTCGTGTAGAACATATTTGAATGAAACTGAACCGGCTTCGTTTTTGTTCTCCTT 2205
||||||||||||||||||||| |||||| |||||| | ||| ||||||||||||||
Sbjct 2147 TATTCGTGTAGAACATATTTGGATGAAATTGAACCAGTTTCATTTTTGTTCTCCTT 2202
> AT1G28390.2 | Symbols: | Protein kinase superfamily protein
| chr1:9966186-9968301 REVERSE LENGTH=1680
Length=1680
Score = 169 bits (91), Expect = 1e-40
Identities = 123/137 (90%), Gaps = 8/137 (6%)
Strand=Plus/Minus
Query 2075 TGTGAACAAAATTTATTTATCTGTTGATGTAAATGTTTCGTTGTATATG--A-TGTT-TA 2130
||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 1680 TGTGAAC-AAATTTATTTATCTGTTGATGTAAATGTTTCGTTGTATATGATATTGTTGAA 1622
Query 2131 TTTTACATAATAG--TATATGTATTCGTGTAGAACATATTTGAATGAAACTGAACCGGCT 2188
|||||||| |||| ||||||||||||||||||||||||||| |||||| |||||| | |
Sbjct 1621 TTTTACAT-ATAGTATATATGTATTCGTGTAGAACATATTTGGATGAAATTGAACCAGTT 1563
Query 2189 TCGTTTTTGTTCTCCTT 2205
|| ||||||||||||||
Sbjct 1562 TCATTTTTGTTCTCCTT 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109386987555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5