BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473059
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1893 0.0
> AT1G28400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G33850.1);
Has 45374 Blast hits to 18870 proteins in 668 species:
Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038;
Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source:
NCBI BLink). | chr1:9972384-9973793 REVERSE LENGTH=1410
Length=1410
Score = 1893 bits (1025), Expect = 0.0
Identities = 1284/1399 (92%), Gaps = 58/1399 (4%)
Strand=Plus/Plus
Query 1 ATATCTAATTGTCCCTTCTCTTCTCTCTATCACACTA-TACTTCACACATCATGGCTCTC 59
||||||||||||| ||||||||||||||||||||||| |||| | |||||||||||| ||
Sbjct 4 ATATCTAATTGTCTCTTCTCTTCTCTCTATCACACTACTACTACTCACATCATGGCTTTC 63
Query 60 TCCATTAGAACCTCCCTCTTCTTCTTCTTCACTACACTTGTTCTTCTCTCCACTCAAATC 119
|||| |||| ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 64 TCCACTAGAGGCTCCCTCTTATTCTTCTTCACTACACTTGTTCTTCTCTCCACCCAAATC 123
Query 120 CATGCAAGAGACAGCTACTTCTTTGGAAAATTCCATAGAGAATCCCCCAAAGATCAAAAT 179
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 124 CATGCAAGAGACAGTTACTTCTTTGGAAAATTCCACAGAGAATCCCCCAAAGATCAAAAC 183
Query 180 CCTAACAGTTTCATCCCTCTCGAGACTAGCGAGAAAACCACAGTAGAAGAATCCGTCCCC 239
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 184 CCTAACAGTTTCATCCCTCTTGAGACTAGCGAGAAAACCACAGTAGAAGAATCCGTCCTC 243
Query 240 AACAAGAAAGAGCAAGAACAAGATCCTACCTTTGTCCCCGAGTCTGAAAACGGCTATGGC 299
|||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 244 AACAAGAAAGAGCAAGAACAAGATCCTACCTTTGTCCCCGAGTCCGGAAACGGGTATGGC 303
Query 300 TTGTATGGTCACGAGACCACCTacaacaacaacaacaacaacaaagaagagttcaacaac 359
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 304 TTGTATGGTCACGAGACCACATACAACAACAACAACGACAACAAAGAAGAGTTCAACAAC 363
Query 360 aacaacaagaacgatgaaaaagtcaacagcaagaCTTTCTCCACTCCAAGCCTGAGCGAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AACAACAAGAACGATGAAAAAGTCAACAGCAAGACTTTCTCCACTCCAAGCCTGAGCGAG 423
Query 420 ACCGAGGAGTCTTTCAACAACTACGACGAAAAGTACCCGAATACAG-CAGAGAGCTACGG 478
||||| |||||||||||||||||||| ||||| |||||||| | || |||||| ||||||
Sbjct 424 ACCGAAGAGTCTTTCAACAACTACGAGGAAAATTACCCGAAGA-AGACAGAGAACTACGG 482
Query 479 CACTAACGGTTACAACAATGAAGAGTTcaataacaacaacaacaacaagtacgatgcaaa 538
|||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 483 CACTAAAGGTTATAACAATGAGGAGTTCAA---CAACAACAACAACAAGTACGATGCAAA 539
Query 539 cttcaaggaagagttcaacaacaacaagtacgatgagaactacgccaaggaagagttcaa 598
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 540 CTTCAAGGAAGAGTTCAACAACAACAAGTACGATGAAAATTACGCCAAGGAAGAGTTCAA 599
Query 599 caacaacaacaac---------tacaa------gTACGATGCAAAC-TTCAAGGAAGAGT 642
||||||||||||| ||||| |||||||| |||| || ||||||||||
Sbjct 600 CAACAACAACAACAACAACAACTACAACTACAAGTACGATGAAAACGTT-AAGGAAGAGT 658
Query 643 CTTTCCCCGAGAACAATGAAGACAGCAAGAGAAACGTTTACAACTCTAACGCTTACGGGA 702
|||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct 659 CTTTCCCCGAGAACAATGAAGACAACAAGAAAAACGTCTACAACTCTAACGCTTACGGGA 718
Query 703 CAGAGCTAGAACGTGAAACACCGTACAAAGGTTACAGCCACAACTTGGAGAGACAAGGCA 762
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CAGAGTTAGAACGTGAAACACCGTACAAAGGTTACAGCCACAACTTGGAGAGACAAGGCA 778
Query 763 TGAGTGACACAAGGTTCATGGAGAAAGGTAGCTACTACTACGACCTTTACAACGACAGAA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGAGTGACACAAGGTTCATGGAGAAAGGTAGCTACTACTACGACCTTTACAACGACAGAA 838
Query 823 ACCACGGCCATTACTACCGAAAGCCTCACACCAAAAGCCCCGCAGGTTATTATTCATCCC 882
||||||||||||||||||| ||| | |||| ||||||||||| ||||| ||||| || |
Sbjct 839 ACCACGGCCATTACTACCGGAAGTCACACAGTAAAAGCCCCGCCGGTTACTATTCTTCTC 898
Query 883 CCGCAACCGAGACTAACTACGAGCAGCAATCGTATTCGTACGGAAACAACAACGAGGAGA 942
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 899 CCGCGACCGAGACTAACTACGAACAGCAATCGTACTCGTACGGAAACAACAACGAGGAGA 958
Query 943 ACAGTTTTAAGGATCCGTACAACTCCAAGTGGGAGAAGAACATGATGAATGAACAGCCTG 1002
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 959 ACAGTTTTAAGGATCCGTACAACTCCAAGTGGGAGAAGAACTTGATGAACGAACAGCCTG 1018
Query 1003 AAGAGTTTGTTGAGGAGCAAGGCACTAATAAGTTCAACCCTTGATGAAGATTGTTATTTG 1062
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1019 AAGAGTTTGTTGAGGAGCAAGGCACTAATCAGTTCAAGCCTTGATGAAGATTGTTATTTG 1078
Query 1063 ATTTCCTCTCAAGACTACTACACTCTTAAAAGCACTTTCTTTCTTTATTTCAA-CTAAGT 1121
|||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||
Sbjct 1079 ATTTCCTCTCAAGACTACTACACTCTTAAAAGTACTTTCTTT-T--ATTTCAAACTAAGT 1135
Query 1122 TATATTACTTAT--T-GTTTAGTCAAACTATATCGTTGTTATCATTGCAACAAATTaaaa 1178
|||||||||||| | |||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 1136 TATATTACTTATCGTTGTTTAGTCAAACTAAATCGTTGTTATCATTGCAA-AACTTAAAA 1194
Query 1179 gtgaaaacaaaaacaaaaaa----------tttttt---------agttga--ggtgggt 1217
|||||||||||||||||||| |||||| |||| | |||||||
Sbjct 1195 GTGAAAACAAAAACAAAAAAGAGAAAGGAGTTTTTTTTTTTTTTTAGTTAATCGGTGGGT 1254
Query 1218 ttgcttttttatgggtttttgaactttgatgtttgcatttgCATATATTATTCGGTGAAA 1277
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1255 TTGCTTTTCTATGGGTTTTTGAACTTTGATGTTTGCGTTTGCATATATTATTCGGTGAAA 1314
Query 1278 AGAAAGATAGTTTATATATATGGTGCTACTTTATGTTATTATTCTCTTAGCTTATGTTAA 1337
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1315 -GAAAGATAGTTTATATATATGGTGCTACTTTATGTTATTATTCTCTTA--T---GTTAA 1368
Query 1338 ATTAATCACTTTTTGGTTA 1356
||||||||||||||||||
Sbjct 1369 TTTAATCACTTTTTGGTTA 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5