BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473060
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28410.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2019 0.0
> AT1G28410.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: myosin heavy chain-related (TAIR:AT4G31340.2);
Has 425 Blast hits to 402 proteins in 77 species: Archae
- 4; Bacteria - 22; Metazoa - 249; Fungi - 4; Plants - 98; Viruses
- 0; Other Eukaryotes - 48 (source: NCBI BLink). | chr1:9976182-9979267
REVERSE LENGTH=1435
Length=1435
Score = 2019 bits (1093), Expect = 0.0
Identities = 1296/1390 (93%), Gaps = 29/1390 (2%)
Strand=Plus/Plus
Query 29 CAGAGAAAATCGAAAGAACCTTTACGAGGAAGCTTTGACTCGAAATCTCGCTGAAGAAGA 88
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 62 CAGAG-GAATCGAAAGAACCTTTACGAGGAAGCTTTGACTCGAAATCTCTCTGAAGAAGA 120
Query 89 AGAGGAGAGACGAAATTGTTGTCTTTAGTTGCCGGCGCCGGGGACGTCTGAACTCCGGTG 148
||||||||||||||| ||||| | |||||| ||| ||||||| ||||| |||||||||||
Sbjct 121 AGAGGAGAGACGAAACTGTTGGC-TTAGTTTCCGACGCCGGGAACGTCGGAACTCCGGTG 179
Query 149 AACAGAGAATGGGGATGCATTTGGCTGCTCTGTTTTTCATTATTTCACCACTCTGT-GTT 207
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 180 AACAGAGAATGGGGCTGCATTTGGCTGCTCTGTTTTTCATCATTTCACCACTCT-TCGTT 238
Query 208 TTCTCCTCTGAAGT-C--CAGCAGATCGGTTCTACTCAAAACTTGGTCAATGATCTGGAC 264
||||||||| |||| | |||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 239 TTCTCCTCTCAAGTCCAGCAGCAGATCGGTTCTAATCAGAACTTGATCAATGATCTGGAC 298
Query 265 GCAGCTAAGCTCAGAATATCTCAATTGGAAGCTGTTCTTGAGGCGACCATACAGAAGCTG 324
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 299 TCAGCTAAGCTCAGAATATCTCAATTGGAAGCTGTTCTTGAGGCGACAATACAGAAGTTG 358
Query 325 GATGCTAAGACCCTTTACTTGAAAGATCGTGAGAAGTTGATCCAAGTTGCTGAAAGTCAG 384
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 359 GATGGTAAGACCCTTTACTTGAAAGAGCGTGAGAAGTTGATCCAAGTTGCTGAAACTCAG 418
Query 385 ATCCATGATTTGCAGGCTTCTTCATACATTGACAAGAGCGGCTTACCTTTGGTTCAAAAG 444
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCCTTGATTTGCAGTCTGCTTCATACATTGACAAGAGCGGCTTACCTTTGGTTCAAAAG 478
Query 445 AGGATAAGCGAGTTGGAAGAAGAGGTTAAACTCCTATGGGCTGCCTTGAGAACAACCAAC 504
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 479 AGGATAAGCGAGTTAGAAGAAGAGGTGAAACTTCTATGGGCTGCCTTGAGAACAACCAAC 538
Query 505 TTCGAGCTTCACGTTTTAGAGGATAAAGCAAGAGAAGCTAAGGATAAACTTAAAGCTAAG 564
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 TTCGAGCTACACGTTTTAGAGGATAAAGCAAGAGAAGCTAAGAATAAACTTAAAGCTAAG 598
Query 565 GCTTTGGAAGTTGAACAGATGACAGAAGTTGTTACGGAGCAGTGGATTCAGGTTCAGCAT 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 599 GCTTTGGAAGTTGAACAGATGACAGAAGTTGTTACGGAGCAGTGGATTCAGGTTCAACAT 658
Query 625 CTTGAGCAGATGAGAGAATTCAATAACCGAAGGCATCACACACCTAGCAGATGCCCGTTC 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTTGAGCAGATGAGAGAATTCAATAACCGAAGGCATCACACACCTAGCAGATGCCCGTTC 718
Query 685 TTGAAGCTCATGAGCGACATCCAAAGAAAACATCTGCCCAAAGTTGATGAAGCATTTGAC 744
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTGAAGCTCATGAGCGATATCCAAAGAAAACATCTGCCCAAAGTTGATGAAGCATTTGAC 778
Query 745 ATTCACTGGAAAGGAAAGAAGGTTCTCTCTGTGCAACCGTATCTCACACAAGCTCTGTCA 804
||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 779 ATTCACTGGAAGGGAAAGAAGGTTCTCTCTGTGCAACCGTATCTCACAAAAGCCCTGTCA 838
Query 805 CGGTTAAAAAGCCTCTGGGCAGCTATTACCAAATATCACCACCAGTTGCAAGGCTTCATC 864
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 839 CAGTTAAAAAGCCTCTGGGCAGCTGTTACCAAATATCACCACCAGTTGCAAGGCTTCATC 898
Query 865 GAACATGAGATGGAAAGAACCGAGATCACAGCGGCTCTTGCAAACAGAGAAGTGGTGTTT 924
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 899 GAGCATGAGATGGAAAGAACCGAGATCACAGCGGCTCTCGCAAACAGAGAAGTGGTGTTT 958
Query 925 TTCATGGCATCTGCATTGATTACCTTCCCAGTGTTTGGAGCTTGGATCTTACTCTCTTCC 984
||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 959 TTCATGGCATCTGCACTAATTACCTTCCCAGTGTTTGGAGCATGGATGTTACTCTCTTCC 1018
Query 985 TAGTTTGGTTTCTGGATGACATGATCAACCGATGCATCAGCAGTGTTCATATTGGTTTTG 1044
||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||
Sbjct 1019 TAGTTTGGTTTCTGGATGACATGTTCAACCGATGCATCAGCAATGTTCAGATTGGTTTTG 1078
Query 1045 CTTCTCATTGCTCAAGAAATTGTCTAGTTTTAAGCTTTGAGATCCGTAGGAGGATCCTAG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 CTTCTCATTGCTCAAGAAATTGTCTAGTTTTAAGCTTTGAGATCCGTAGGATAATCCTAG 1138
Query 1105 TAGGATCTATTGCATCCGTGAACAAACCGAAAACCCGGTTAATCTGTGGTTTAAA----- 1159
||||||| ||| |||||||||||||||| |||| ||||||| |||||||||||||
Sbjct 1139 TAGGATCAATTACATCCGTGAACAAACC-AAAATCCGGTTACTCTGTGGTTTAAAGTTTA 1197
Query 1160 --CCAGTTGTTATGAGGTAAGGCGCACAGTTGTACCCAAGTTCAATTGTTGGAGACTGAA 1217
|||||| ||||| || |||| ||||||||||| |||||||||||||||||| | ||||
Sbjct 1198 AACCAGTTATTATGGGGCAAGGTGCACAGTTGTATCCAAGTTCAATTGTTGGAAATTGAA 1257
Query 1218 TTTTGTTATTGAAAAAAGAGACAAAACCAAAGAGATGCAGACAAA-GTCAAGTCCCTTGT 1276
||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 1258 TTT-GTTATTGAAAAAAGAGACAAAACCAAAGACATGCAGACAAAAGTCAAGTCC-TTGT 1315
Query 1277 TCGTTGCTTTAC-GTTAGATGATGTTTGTCGTAAGTACTAAGTAGGAGTAGCCTTTTTAG 1335
|||||| ||||| |||||||| | || |||||||||| | | |||||||||| ||
Sbjct 1316 TCGTTGTTTTACCGTTAGATG-T-TT-GTCGTAAGTA----G--G-AGTAGCCTTTGTAT 1365
Query 1336 GGTTTAACGTGATATGATTTTACTACATGTACTGTAGTGAAAGTTTTTATATACAAGACC 1395
|||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1366 GGTTTAACGTGAGATGATTTTACTACATGTAGTGTAGTGAAAGTTTATATATACAAGACC 1425
Query 1396 ACATTATTGG 1405
||||||||||
Sbjct 1426 ACATTATTGG 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69226551555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5