BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473065

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G28480.1 | Symbols: GRX480, roxy19 | Thioredoxin superfamily...   616    9e-176


> AT1G28480.1 | Symbols: GRX480, roxy19 | Thioredoxin superfamily 
protein | chr1:10013474-10014073 REVERSE LENGTH=600
Length=600

 Score =  616 bits (333),  Expect = 9e-176
 Identities = 406/439 (92%), Gaps = 14/439 (3%)
 Strand=Plus/Plus

Query  1    AAAACATACTTGAAAATGCAAGGAACGATTTCTTGTGCAAGAAACTATAACATGAC--CA  58
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||
Sbjct  12   AAAACATACTTGAAAATGCAAGGAACGATTTCTTGTGCAAGAAATTATAACATGACGACA  71

Query  59   -CCGTCGGGGAATCTCTGCGGCCGCTACCGCTTAAAACACAGGGAAACGGCGAGAGCGTT  117
             |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct  72   ACCGTCGGGGAATCTCTGCGGCCGCTATCGCTTAAAACGCAGGGAAACGGCGAGAGAGTT  131

Query  118  AGGGTGGTGGTGGAGGAGAACGCGGTGATCGTGATTGGACGGAGAGGATGTTGCATGTGT  177
             || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  132  CGGATGGTGGTGGAGGAGAACGCGGTGATTGTGATTGGACGGAGAGGATGTTGCATGTGT  191

Query  178  CACGTGGTGAGGAGGCTGCTTCTTGGACTTGGAGTGAATCCGGCGGTTCTTGAGATTGAT  237
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  192  CATGTGGTGAGGAGGCTGCTTCTTGGACTTGGAGTGAATCCGGCGGTCCTTGAGATTGAT  251

Query  238  GAGGAGAGGGAAGAGGAAGTCTTGCGTGAGTTGGAGA-----GGA-TT---GGCGGCGGA  288
            |||||||||||||| ||||| ||| ||||||||||||     ||| ||   |||||||||
Sbjct  252  GAGGAGAGGGAAGATGAAGTTTTGAGTGAGTTGGAGAATATTGGAGTTCAAGGCGGCGGA  311

Query  289  GACACGGTGAAGTTACCGGCGGTTTATGTAGGAGGGAGGTTGTTTGGAGGATTAGATAGA  348
            |  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  312  GGTACGGTGAAGTTACCGGCGGTTTATGTAGGAGGGAGGTTGTTTGGAGGGTTAGATAGG  371

Query  349  GTTATGGCCACTCATATCTCCGGTGAGTTAGTTCCAATTCTTAAGGAGGCTGGGGCTCTG  408
            |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  372  GTTATGGCTACTCATATCTCCGGTGAGTTAGTTCCAATTCTTAAGGAAGTTGGGGCTCTG  431

Query  409  TGGTTGTGATT-TATAATT  426
            ||||||||||| || ||||
Sbjct  432  TGGTTGTGATTGTA-AATT  449



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24162624707


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5