BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473066
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28490.1 | Symbols: SYP61, ATSYP61, OSM1 | syntaxin of plant... 1609 0.0
> AT1G28490.1 | Symbols: SYP61, ATSYP61, OSM1 | syntaxin of plants
61 | chr1:10015919-10018047 FORWARD LENGTH=1076
Length=1076
Score = 1609 bits (871), Expect = 0.0
Identities = 968/1014 (95%), Gaps = 9/1014 (1%)
Strand=Plus/Plus
Query 1 GGTGATGCGTTTTGCTATGTAAGAGAGACGAATCTGACGCCGGAATCCT-TTTTAGTGCA 59
||||||||||||||||||||||||||||||||||| |||||||||| || ||||| | ||
Sbjct 1 GGTGATGCGTTTTGCTATGTAAGAGAGACGAATCTCACGCCGGAAT-CTCTTTTACTTCA 59
Query 60 CCGTCGTTTGTTCTCCGTCGCGTCACGTTTCGATTAATTCCTTCACAAGGTAAG-AAGCT 118
|||||||||||||||||||||||||| |||||||||||||||||||| ||| || || |
Sbjct 60 CCGTCGTTTGTTCTCCGTCGCGTCACCTTTCGATTAATTCCTTCACAGGGT-AGCAAAAT 118
Query 119 TCT-TCAATTTTCGGGATGTCTTCTGCTCAAGATCCATTCTACATTGTTAAAGAAGAGAT 177
| | | | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 TTTGTTGA-TTTCGGGATGTCTTCAGCTCAAGATCCATTCTACATTGTTAAAGAAGAGAT 177
Query 178 CCAGGATTCTATTGATAAGTTGCAATCAACATTCCACAAATGGGAGCGTATCTCTCCCGA 237
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 178 TCAGGATTCTATTGATAAGTTGCAATCTACATTCCACAAATGGGAGCGTATCTCTCCCGA 237
Query 238 CATGGGGGATCAAGCGCATGTGGCGAAGGAGCTTGTTGCTACTTGTGGAAGCATTGAGTG 297
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CATGGGTGATCAAGCACATGTGGCGAAGGAGCTTGTTGCTACTTGTGGAAGCATTGAGTG 297
Query 298 GCAGGTAGATGAGCTGGAAAAAGCGATTACTGTTGCAGCTAAAGATCCTTCATGGTATGG 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 GCAGGTAGATGAGCTGGAAAAAGCGATTACTGTTGCAGCAAAAGATCCTTCATGGTATGG 357
Query 358 TATTGATGAAGCTGAGCTTGAAAAACGGAGGAGATGGACTAGTAATGCTAGGACACAGGT 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CATTGATGAAGCTGAGCTTGAAAAACGGAGGAGATGGACTAGTAATGCTAGGACACAGGT 417
Query 418 GCGGAATGTGAAGTCTGGTGTTTTAGCTGGAAAGGTTAGTTCTGGAGCTGGTCATGCAAG 477
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 GCGGAATGTGAAGTCTGGTGTTTTAGCTGGAAAGGTTAGTTCTGGAGCAGGTCATGCAAG 477
Query 478 TGAAGTGCGCAGAGAACTGATGAGAATGCCAAACTCGGGTGAAGCAAGTAGATACGATCA 537
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 478 TGAAGTGCGTAGAGAACTAATGAGAATGCCAAACTCGGGTGAAGCAAGTAGATATGATCA 537
Query 538 GTATGGAGGGAGAGACGATGACGGTTTTGTACAGTCAGAATCGGATAGGCAAATGCTGTT 597
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 538 GTATGGAGGGAGAGACGATGATGGTTTTGTACAGTCAGAATCAGATAGGCAAATGCTGTT 597
Query 598 GATAAAGCAACAAGACGAAGAATTGGATGAGCTCAGTAAAAGTGTACAGAGAATTGGAGG 657
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 598 GATAAAGCAACAAGACGAAGAATTGGATGAGCTTAGTAAAAGTGTACAGAGAATTGGAGG 657
Query 658 AGTGGGGCTCACTATACACGATGAACTCGTTGCACAGGAGAGAATAATAGATGAATTGGA 717
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGTGGGGCTCACTATACACGACGAACTCGTTGCACAGGAGAGAATAATAGATGAATTGGA 717
Query 718 TACGGAGATGGACAGTACAAAGAACCGGCTGGAGTTTGTTCAGAAAAAAGTGGGAATGGT 777
||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||
Sbjct 718 TACGGAGATGGACAGCACAAAGAACCGTCTTGAATTTGTTCAGAAAAAAGTGGGAATGGT 777
Query 778 AATGAAGAAAGCTGGAGCAAAAGGTCAAATGATGATGATATGTTTCTTGCTCGTCTTGTT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AATGAAGAAAGCTGGAGCAAAAGGTCAAATGATGATGATATGTTTCTTGCTCGTCTTGTT 837
Query 838 CATCATCCTATTCGTTCTTGTCTTCTTGACCTAAAGACC-GAGCCACTGGATCTTATAGA 896
||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||
Sbjct 838 CATCATCCTATTCGTTCTTGTCTTCTTGACCTAAAGAACAGAGCCGCGGGATCTTATAGA 897
Query 897 TGGGAGTTTAATGTCTTACATTATCATATGTTTTTGGTGAAACAAAAGGAATATTTACAT 956
||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 898 TGGGAGTTTAATGTCTTACATTATCAT--GTTTGTGGTGAAACAAATGGAATATTTACAT 955
Query 957 AAGGTTGTCTGTTTTTTCTTCTCTTATCCAATCCCATATCTAATTTTGAACTTT 1010
||||||||||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct 956 AAGGTTGTCTGTTTTTTCTTCTCCTATCCAATCCCACATATAATTTTGAACTTT 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5