BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473072
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28520.1 | Symbols: VOZ1, ATVOZ1 | vascular plant one zinc f... 2510 0.0
> AT1G28520.1 | Symbols: VOZ1, ATVOZ1 | vascular plant one zinc
finger protein | chr1:10029150-10031990 FORWARD LENGTH=2129
Length=2129
Score = 2510 bits (1359), Expect = 0.0
Identities = 1452/1498 (97%), Gaps = 1/1498 (0%)
Strand=Plus/Plus
Query 125 GTGTGATTTCTTATGACGGGGAAGCGATCAAAGACTAATTGCAGATCTGCTTCTCACAAG 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 GTGAGATTTCTTATGACGGGGAAGCGATCAAAGACTAATTGCAGATCTGCTTCTCACAAG 205
Query 185 CTGTTCAAGGATAAGGCTAAGAACCGTGTTGATGATTTGCAAGGCATGCTTTTGGATCTT 244
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 CTCTTCAAGGATAAGGCTAAGAACCGTGTTGATGATTTGCAAGGCATGCTTTTGGATCTT 265
Query 245 CAGTTTGCGAGGAAAGAGAGTAGGACTACTGATGTTACTCTTCTTGAGGAGCAAGTGAAT 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 266 CAGTTTGCGAGGAAAGAGAGTAGGCCTACTGATGTTACTCTTCTTGAGGAGCAAGTGAAT 325
Query 305 CAGATGCTTCGTGAGTGGAAGTCAGAGCTCAACGAGCCCTCTCCTGCTTCTTCTTTGCAA 364
|||||||||||||||||||| || |||||||| ||||| ||||| ||||| || ||||||
Sbjct 326 CAGATGCTTCGTGAGTGGAAATCTGAGCTCAATGAGCCTTCTCCAGCTTCATCCTTGCAA 385
Query 365 CAAGGTGGTACTCTGGGGTCTTTCTCATCAGACATTTGTCGGCTGCTGCAGCTCTGTGAT 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 386 CAAGGTGGTACTCTGGGGTCTTTCTCATCAGATATTTGTCGGCTGCTGCAGCTCTGTGAT 445
Query 425 GAGGAAGATGATGCTACCAGCAAATTAGCTGCACCCAAGCCCGAGCCTGCTGATCAGAAT 484
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 446 GAGGAAGATGATGCTACCAGCAAATTAGCTGCCCCCAAGCCCGAGCCTGCTGATCAGAAT 505
Query 485 CTTGAAGCTGGAAAAGCTGCTGTCTTCCAAAGGGGATACAATTTGGTTCAGGGGAAGTCA 544
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 CTCGAAGCTGGCAAAGCTGCTGTCTTCCAAAGGGGATACAATTTGGTTCAGGGGAAGTCA 565
Query 545 GAACATGGATTACCATTGGTTGATCATTGCAAAGATTTGTCCTTAGCAGGTGGTAACAAT 604
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 566 GAACATGGATTACCATTGGTTGATAATTGCAAAGATTTGTCCTTAGCAGCTGGTAACAAT 625
Query 605 TTCGATGGAACGGCTCCTTTGGAATATCATCAGCAGTTTGATCTGCAACAAGAGTTTGAA 664
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 626 TTCGATGGAACGGCTCCTTTGGAGTATCATCAGCAGTATGATCTGCAACAAGAGTTTGAA 685
Query 665 CCAAACTTCAATGGTGGTTTCAACAATTGTCCCAGTTATGGTGTAGTGGAGGGTCCTATA 724
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 686 CCAAACTTCAATGGTGGTTTCAACAATTGTCCCAGTTATGGTGTAGTAGAGGGTCCTATA 745
Query 725 CATATCTCTAATTTTATCCCGACTATTTGTCCTCCACCCTCTGCATTCTTGGGTCCAAAA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 CATATCTCTAATTTTATCCCGACTATTTGTCCTCCACCCTCTGCATTCTTGGGTCCAAAA 805
Query 785 TGTGCTCTTTGGGATTGCCCTAGGCCAGCTCAAGGATTCGATTGGTTCCAGGATTACTGC 844
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 806 TGTGCTCTTTGGGATTGCCCTAGGCCAGCTCAGGGATTTGATTGGTTCCAGGATTACTGC 865
Query 845 AGCAGCTTCCACGCTGCACTGGCTTTCAATGAAGGGCCACCAGGTATGAATCCGGTGGTG 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 AGCAGCTTCCACGCTGCACTGGCTTTCAATGAAGGGCCACCAGGTATGAATCCGGTGGTG 925
Query 905 CGTCCTGGAGGTATCGGCCTAAAAGACGGTCTGCTTTTTGCTGCTCTTAGCGCAAAGGCT 964
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 926 CGTCCTGGAGGTATCGGCCTAAAAGACGGTCTGCTTTTTGCTGCTCTTAGTGCAAAGGCT 985
Query 965 GGAGGGAAAGACGTTGGTATTCCCGAATGTGAAGGAGCTGCAACTGCTAAATCTCCATGG 1024
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GGAGGGAAAGATGTTGGTATTCCCGAATGTGAAGGAGCTGCAACTGCTAAATCTCCATGG 1045
Query 1025 AATGCTCCAGAGCTCTTTGATCTCACGGTTCTAGAGAGTGAGACACTAAGGGAGTGGCTA 1084
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1046 AATGCTCCAGAGCTCTTTGATCTCACGGTTCTGGAGAGTGAGACACTAAGGGAGTGGCTA 1105
Query 1085 TTCTTTGACAAGCCAAGGAGGGCCTTTGAGAGCGGGAATAGGAAGCAAAGATCTTTACCA 1144
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1106 TTCTTTGACAAGCCAAGGAGGGCCTTTGAGAGCGGGAACAGAAAGCAAAGATCTTTACCA 1165
Query 1145 GACTACAATGGTCGCGGTTGGCACGAGTCACGCAAACAGATCATGATCGAGTTTGGAGGG 1204
|||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1166 GACTACAATGGTCGTGGTTGGCACGAGTCACGTAAACAGATCATGGTCGAGTTTGGAGGG 1225
Query 1205 CTGAAGAGATCTTACTACATGGATCCACAGCCTCTGCACCATTTCGAATGGCATCTTTAC 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 CTGAAGAGATCTTACTACATGGATCCACAGCCTCTGCACCATTTCGAATGGCATCTTTAC 1285
Query 1265 GAATATGAGATCAACAAGTGCGATGCTTGTGCCTTGTACAGGCTCGAGCTCAAGCTTGTT 1324
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1286 GAATATGAGATCAACAAGTGTGATGCTTGTGCCTTGTACAGGCTCGAGCTCAAGCTTGTT 1345
Query 1325 GACGGGAAGAAGAATTCAAAAGGCAAGGTTTCAAACGACTCTGTGGCTGATCTACAGAAG 1384
||||||||||||| |||||||||||| || ||||||||||| ||||||||||| ||||||
Sbjct 1346 GACGGGAAGAAGACTTCAAAAGGCAAAGTCTCAAACGACTCAGTGGCTGATCTGCAGAAG 1405
Query 1385 CAGATGGGAAGACTCACAGCTGAGTTCCCTCCAGAGAACAATACCAATAACACCAACAAC 1444
||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct 1406 CAGATGGGAAGACTCACAGCTGAGTTCCCTCCAGAAAACAATACCACTAACACCACCAAC 1465
Query 1445 AACAACAAACGCTGCATCAAAGGAAAACCAAAAGTTAGCTCAAAAGTCGCCACCGGGAAT 1504
||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 1466 AACAACAAACGCTGCATCAAAGGAAGACCAAAAGTGAGCACAAAAGTCGCCACCGGGAAT 1525
Query 1505 GTTCAGAACACAGTAGAGCAGGCAAATGACTATGGAGTAGGTGAAGAGTTTAACTATCTC 1564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 GTTCAGAACACAGTAGAGCAGGCAAATGACTATGGAGTAGGTGAAGAGTTTAACTATCTG 1585
Query 1565 GTCGGAAATCTAAGCGACTATTATATCCCCTGAGAAGAAAATG-AAAAACTCAGGTTT 1621
||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 1586 GTCGGAAATCTAAGCGACTATTATATCCCCTGAGACGAATGTGGAAAAACTCAGGTTT 1643
Score = 401 bits (217), Expect = 1e-110
Identities = 240/251 (96%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 1618 GTTTTCTCTCTATCTATGGAGATTGTGTATATATAACAAGAAGGGGATGCTGAAGACTGT 1677
||| ||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1757 GTTCTCTGTCTATCTATGGAGATTATGTATATATAACAAGAAGTGGATGCTGAAGACTGT 1816
Query 1678 CCTGGAGTTAGGAAAAGTAAATGTGACAAAGGAGACTGCTTTTTAAGATTCAGTCTTTGG 1737
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1817 CCTGGAGTTAGGAATAGTAAATGTGACGAAGGAGACTGCTTTTTAAGATTCAGTCTATGG 1876
Query 1738 AGGTGAAGACATATTTACTGACATTCCGGTTTATATATTTTGATGCATTTTCGACTCTCT 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1877 AGGTGAAGACATATTTACTGACATTCCGGTTTATATATTTTGATGCATTTTCGACTCTCT 1936
Query 1798 TCTGCGATATAATGCAGATGACAAATTATGTAACCGATGCGGAA-TACAGTTT-GAGTAT 1855
||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||
Sbjct 1937 TCTGCGATATAATGCAGATGACAAATTATGTAACCGATGGGGAAATACGGTTTTGAGTAT 1996
Query 1856 CAGTGTTGTTC 1866
|||||||||||
Sbjct 1997 CAGTGTTGTTC 2007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92369002800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5