BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473074
Length=1877
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28530.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 2846 0.0
> AT1G28530.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
19 plant structures; EXPRESSED DURING: 10 growth stages; Has
20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10031997-10035500
REVERSE LENGTH=1979
Length=1979
Score = 2846 bits (1541), Expect = 0.0
Identities = 1769/1880 (94%), Gaps = 12/1880 (1%)
Strand=Plus/Plus
Query 1 GTCAATGGcttctgtttctactgcttcttgttcttcttcttcttcacttctattcCCCTC 60
|||||||||||| ||||||||| | ||||||||||||||||||||| ||||| ||
Sbjct 1 GTCAATGGCTTCCATTTCTACTG---C---TTCTTCTTCTTCTTCACTTCTCTTCCCTTC 54
Query 61 TCGAAATTTCGCATCTATTCCGTTGA-TTCCACTCCGGAGAAGCTCTGTGTCTTTCATTC 119
|||||||||| ||| ||||| || | |||||| | ||||||||||||||||||| |||
Sbjct 55 TCGAAATTTCAAATCGATTCCATT-ACTTCCACAACAGAGAAGCTCTGTGTCTTTCGTTC 113
Query 120 GCGGTTATTCTAAGAATTCGTCTACGGAGGAGGACATTCTCCGTTTCGTGGCGGAATCCG 179
|| ||| |||||||||||| || || |||||||||||||||||||||||||| ||||| |
Sbjct 114 GCTGTTTTTCTAAGAATTCTTCAACAGAGGAGGACATTCTCCGTTTCGTGGCCGAATCTG 173
Query 180 ATGGGAAGGCACTTCCTTGTGTGCGGACGTACGAGAATAATTCAGCTCGGCTTAGTCTCG 239
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 174 ATGGGAAGGCACTTCCATGTGTGCGGACGTACGAGAATAATTCAGCTCGGCTCAGTCTCG 233
Query 240 TTGGTACTGTTGCTTTTGATCAGGCTTTAACCGCTGCTGCTGCTGACGGTGGTGAAGCCG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TTGGTACTGTTGCTTTTGATCAGGCTTTAACCGCTGCTGCTGCTGACGGTGGTGAAGCCG 293
Query 300 CCGATGATCATCTTCGTGAAAATGTCCCTGTCATGGTGGTTGAGACTGTTTTTCCCGGAG 359
||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||| |||||||
Sbjct 294 CCGATGACCATCTTCGTGAGAATGTTCCTGTTATGGTGGTCGAGACTGTTTTCCCCGGAG 353
Query 360 GATCTGATCCTAAAGCTACTGTGTCAACAAGATTGTTCTTGCCTACTAAGAAAGTTAGAG 419
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 354 GATCTGATCCTAAGGCTACTGTGTCAACCAGATTGTTCTTGCCTACTAAGAAAGTTAAAG 413
Query 420 AGCGAGCTAAAAAG-CTGCGGCGGTCTCTCTCTGAGGATCTTTCTAGTGGAGATTTGTCA 478
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 414 AGCGAGCT-AAAAGATTGCGGCGGTCTCTCTCTGAGGATCTTTCTAGTGGAGACTTGTCA 472
Query 479 AAGAACATACTTGCGATGACTTTTAGGCAAGTTGTTTTACGGCAGCTGTGGAACTTTCAG 538
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 473 AAGAACATACTTGCGATGACTTTTAGGCAAGTTGTTTTGCGGCAGCTGTGGAACTTCCAG 532
Query 539 CTGGTGTTATTTGCACCTGGAGCTGAAAGAGAAATGGGAGAATTCGAAAACCCTCGAGAG 598
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 533 CTAGTGTTATTTGCACCTGGAGCTGAAAGAGAAATGGGAGATTTCGAAAACCCTCGAGAG 592
Query 599 CAGGTTTCTACATCCTTCACTCTTAGCTCATCCGATGAACGGGTTATATCTGTTATTGCA 658
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 593 CAGGTTTCTACATCCTTCACTCTTAGCTCATCAGATGAACGGGTTATATCTGTTATTGCA 652
Query 659 GAAGTTATATGCATCTCCGCTCTTCAAAGCACCGAGAAGCATTTCCTCGATGATTATCTG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GAAGTTATATGCATCTCCGCTCTTCAAAGCACCGAGAAGCATTTCCTCGATGATTATCTG 712
Query 719 GGAAAA-CTTAAATTTCCCTTTTTAAAGTGGTTAAATAAACACAAGAGGATTGCTTCAAG 777
|||||| || || ||||| ||| | ||||||||| ||||| || |||||||||||||||
Sbjct 713 GGAAAAGCT-AAGTTTCCGTTTATGAAGTGGTTATCTAAACGCAGGAGGATTGCTTCAAG 771
Query 778 AGACTGCTCTGTTGTCCTGCATAAGTTATTTGATGATGAGCCGAATACCAACCTCTTGCT 837
||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 772 AGACTGCTCGGTTGTCCTGCATAAGTTATTTGATGATGAGCAGAATACCAAACTTTTGCT 831
Query 838 TGAATACTACCAGTCAAGGAAGGAAAATTTCAAACTTGAAGACACAAGGCAAAGAAGCCG 897
||| || ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 832 TGAGTATTACCAGTCAAGGAAGGAAAATTTCAAACTTGCAGACACAAAGCAAAGAAGCCG 891
Query 898 GTGGTGGAACTTATCTGCCAATTCTAAATTGGAAAAAATCGGTGGCCCCGGATTTAGTAG 957
||||||| |||||||||||||||| || ||||||||||| |||||||| |||||||||||
Sbjct 892 GTGGTGGGACTTATCTGCCAATTCCAAGTTGGAAAAAATTGGTGGCCCTGGATTTAGTAG 951
Query 958 TTGGGCAAGTGAATATTTACCTGCATATCGACTAGAAATTGATACTATAATACTTGCAGA 1017
||||||||||||||||||||| ||||||||||| ||||| |||| || ||||||||||||
Sbjct 952 TTGGGCAAGTGAATATTTACCCGCATATCGACTGGAAATGGATAGTACAATACTTGCAGA 1011
Query 1018 CTTAAAGCTTGAGGGCTGGAGAAAGTCCAGTGAAAATAAGTGGGAAGTTCTTCTAACTCA 1077
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1012 CTTAAAGCTTGAGGGCTGGAGAAAGTCCAGTGAGAATAAGTGGGAAGTTCTTCTAACTCA 1071
Query 1078 CTCCCAAATGGTTGGATTAGCTGAAGCATTGGACATATACTTTGAAGATATATATTCACT 1137
||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||
Sbjct 1072 CTCCCAAATGGTTGGATTAGCTGAAGCATTGGATATTTACTTTGAAGACACATATTCACT 1131
Query 1138 CCCCAGGAAACAGCTACCATGTGATGTTCCTGGAAATTATGCAAACTTACCCAGTGAAAA 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1132 TCCCAGGAAACAGCTACCATGTGATGTTCCTGGAAATTATGCAAACTTACCCAATGAAAA 1191
Query 1198 GAGAGGATTGTCTTTGTTGAAATTCATATCTGTCACCATGGCCAGTGGAATTCTTCTTCT 1257
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1192 GAAAGGATTGTCTTTGTTGAAATTCATATCTGTCACCATGGCCAGTGGAATTTTTCTTCT 1251
Query 1258 TGCTGTGAGTGCTGCGGCCCAATTCTGTCTTCCTCATAAAAGCGAGCGGAAGTATCCTGG 1317
||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct 1252 TGCTGTGAGTGCTGCAGCCCAATTCTGTCTTCCTCAGAAAAGCGAGAGGAAGTATCCCGG 1311
Query 1318 AAAACGCCAAGATATTTTATGGTCAGAGAGTGAATTATTATCTCATCAATCTTCAGATTT 1377
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1312 AAAACGCCAAGAGATTTTATGGTCAGAGAGTGAATTGTTATCTCATCAATCTTCAGATTC 1371
Query 1378 CTCTGAGTTGGATTCATTCTGCGGATTACTCGTCAACAAGCTCAAGGATGCCTACAGCTG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 CTCTGAGTTGGATTCATTCTGCGGATTACTCGTCAACAAGCTCAAGGATGCCTACAGCTG 1431
Query 1438 GGTAGGGGAGATCACACTGGAAAGTAGCATAGGTGCCTGGATTGGGGAAGTACCTGATTA 1497
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1432 GGTAGGGGAGATCACACTAGAAAGCAGCATAGGTGCCTGGATAGGGGAAGTACCTGACTA 1491
Query 1498 CTTGAAAGAAACCAGCAGAGCTAAGTCTGTTGAAGATCACATCGTTACAAGCTCTTCTCT 1557
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1492 CTTGAAAGAAACCAGCAGAGCTAAGTCTGTTGAAGATCACATTGTTACAAGCTCGTCTCT 1551
Query 1558 TCTGGAAAAACTCAATGAAGACGCAAAGGCAGCTGCGCAAGATATCGCTACGTACCAGGT 1617
|||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1552 TCTGGAAATACTCAATGAAGACGCAAAGGCATCTGCGCAAGATATCGCTACTTACCAGGT 1611
Query 1618 CGTTCTATCAGCTGAAGGTAAAATCATAGGGTTCCAACCGACAAGCCGGGTGGCTGTGAA 1677
||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 AGTTTTATCATCCGAAGGTAAAATCATAGGGTTCCAACCGACAAGCCGGGTGGCTGTGAA 1671
Query 1678 TCACTGGGCTGCTAATCCTTTAGCTAAAGAACTTTATGGTGGaaaaaaaCTCAAGCCTGG 1737
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1672 TCACTGGGCTGCTAATCCTTTAGCTAGAGAACTTTATGGAGGAAAAAAACTCAAGCCTGG 1731
Query 1738 GCTGATTGAGCCTGGTCTTAAGAGTCACCCTCCGAAAAAAGTAGTTGTGTTGGAATTGTT 1797
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1732 GCTGATTGAGCCTGGTCTTAAGAGTCACCCTCCCAAAAAAGTAGTTGTGTTGGAATTATT 1791
Query 1798 AATGTCTGTGAATTCAGATCGTCCTTTTGCATTGGTCAGACCATTATTGCCACAATAACC 1857
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1792 AATGTCTGTGAATTCAGATCGTCCTTTTGCATTGGTCAGACCATTATTGCCACAATAAGC 1851
Query 1858 ATAGCCAAGTTCCCGTCTCT 1877
||||| ||||||| ||||||
Sbjct 1852 ATAGCGAAGTTCCTGTCTCT 1871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92921208795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5