BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473075

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G28540.1 | Symbols:  | unknown protein; Has 25 Blast hits to...   763    0.0  


> AT1G28540.1 | Symbols:  | unknown protein; Has 25 Blast hits 
to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:10035664-10036956 FORWARD 
LENGTH=602
Length=602

 Score =  763 bits (413),  Expect = 0.0
 Identities = 535/591 (91%), Gaps = 19/591 (3%)
 Strand=Plus/Plus

Query  1    AAGAAAAGAATCTAGACGACGACAATGGCGGAGAAGAGCCAAATCCCTGATAACAAC-AC  59
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  9    AAGAAAAGAATCTAGACGACGACAATGGCGGAGAAGAGCCAAATCCCTGATAACAACAAC  68

Query  60   --CACTTCTTCGTCGGCGAAGAAACCGACGCCGGAGATTGGATCGGGTTCGGGTAAAAGG  117
               ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct  69   AATACTTCTTCGTCGGCGAAAAAACCGACGCCGGAGATCGGATCGGGTTCGGGTAAAA-G  127

Query  118  ATACCGTATTATAACCCGCCCGAGTCGGTGAATCCGGATCAGGCGACGTTAAGGGAGCAA  177
                 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  128  -----GTATTATAACCCGCCTGAGTCGGTGAATCCGGATCAGGCGACGTTAAGGGAGCAA  182

Query  178  TGGAAATTCGCCATTCGGCAGTACAGTAAATGGTACTCACACGCTTGGGGAACTGCGATT  237
            ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  183  TGGAAATTCGCGATTCGGCAATACAGTAAATGGTACTCACACGCTTGGGGAACTGCGATT  242

Query  238  CTCGCCGGAGGAGTCTTCTTCGGACTCGGTTGGATCATCAAGGGATCTAATCCTCTTCCT  297
            || || |||||  | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  243  CTAGCTGGAGGTTTTTTCTTCGGACTCGGTTGGATCATCAAGGGCTCTAATCCTCTTCCT  302

Query  298  TCTCTTCAATCGAGTTCTAAGCCTCGCGATGAAGAAAAATGATTCAATATCTGCGttttt  357
            |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct  303  TCTCTTCAATCGAGTTCTAAGCCTCGCGATGAAGAAAAATGATTCCGTATCTGCGTTTTT  362

Query  358  t-tCGGAAAGCAGCATGAG-ACGCGAGTCAACAGA-GGAACATCTTCATGTACATT-ACG  413
            | || ||  |  | |  || | ||| ||||||| | |||||||||||||| ||||| | |
Sbjct  363  TCTCTGATGGG-GAAAAAGGA-GCGCGTCAACA-ATGGAACATCTTCATGAACATTCA-G  418

Query  414  AAGTCCATCGATCGTTAGAAGCAGAGAGAGCACGAAGCAAGCGATTGTAGAGAGTAGAAA  473
            |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| 
Sbjct  419  AAGTACATCGATCGGTAGAAGCAGAGAGAGCACGAAGCAAGCGATTGTAAAGAGTGGAAC  478

Query  474  CGAAAC-aaaaaaa-TCTTGAGTGTGAACCTTGTTTGTCTGATAATTCCAGGAATGTATA  531
            |||||| ||||||| | |||||||||||| |||||||||||||||||||| |||||||||
Sbjct  479  CGAAACTAAAAAAACTTTTGAGTGTGAACTTTGTTTGTCTGATAATTCCAAGAATGTATA  538

Query  532  CAAATTTGCAGGAAAATAGTGAAAAATGTTAATGTTGAATTATAAAAATAC  582
            |||||||||||||||||| |||||||||||| |||| | | |||||| |||
Sbjct  539  CAAATTTGCAGGAAAATATTGAAAAATGTTAGTGTTTAGTAATAAAAGTAC  589



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5