BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473086
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28630.4 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1524 0.0
> AT1G28630.4 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: synergid; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G77960.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr1:10058456-10063452 REVERSE LENGTH=1925
Length=1925
Score = 1524 bits (825), Expect = 0.0
Identities = 995/1078 (92%), Gaps = 7/1078 (1%)
Strand=Plus/Plus
Query 9 ATGGATCTCGTTGATAATACGTTGCCATTTACTCCGTCGTGGTTCCCCCCATCACCAGAA 68
||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGATCTCGTTGATGATATGTTGCCATTTACTCCTTCGTGGTTCCCCCCATCACCAGAA 60
Query 69 GCATTTCCTTCAATAATTGAGCTTCTACAAGACCCTATGACGGCAGAAATTGAGAACTTT 128
|||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 61 CCATTTCCTTCAATAATGGAGCTTCTACAAGATCCTATGACGGCAGAGATTGAGAACTTT 120
Query 129 GATGGAATATTCTCTACTCCTGCAATAAGCGAGGCTATTCCCTCTACGAGTACACAACCG 188
|||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 121 GATGGAATATTCTCTAGTCCTGCAATAAGCGAGGCGATTCCCTCAACGAATACACAACCG 180
Query 189 AGTGTAGTCCCATGTCCAGAGTTATCAACAATGCCTCAAAATCCACCTGACATGCAACAA 248
|||||| ||||||||||||||| ||||||||| ||||||| | |||||||||||||||||
Sbjct 181 AGTGTATTCCCATGTCCAGAGTCATCAACAATACCTCAAATTTCACCTGACATGCAACAA 240
Query 249 CAAGAACCACTGGGTGATTCACATGGACATTTACAACAATCTGATCAACAGGATTTATTA 308
||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 241 CAAGAACCACTGGATGATTCACATGGATATTTACAACAATCTGATCAACAAGATTTATTA 300
Query 309 AATCCAAACATGCTGAATTCTTATCAAGAGCCAGTCGTTTCTACAACACAGCAGCAACAA 368
||||||||||||||||||| |||||||||||||| ||| ||||| | | | |||||||||
Sbjct 301 AATCCAAACATGCTGAATTGTTATCAAGAGCCAGACGTGTCTAC-A-ATA-CAGCAACAA 357
Query 369 CAACCCATTTTACATGGATCATTAGAACAATCTGATCAACAAGGTTTATTAAATCCAAAC 428
|||| || ||||| |||| | |||||||||||||||| |||| ||||||||||||||||
Sbjct 358 CAACTCAATTTACCTGGACCTTTAGAACAATCTGATCTACAACGTTTATTAAATCCAAAT 417
Query 429 ATGATGTCTTCTGAGCCAGGTGTTTCTACATTGCAGCAACAACAATTACTATGCAATTCA 488
||||||| ||||||||||| | ||||||||| ||| ||||||||||||||||||||||||
Sbjct 418 ATGATGTATTCTGAGCCAGATTTTTCTACATCGCAACAACAACAATTACTATGCAATTCA 477
Query 489 GCTGGATATTTGCAACAATCTGATCACCAAGGTTTATTAAGTCCAAACATGCTGGATTCT 548
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 478 GCTGGATATTTGCAAGAATCTGATCACCAAGGTTTATTAAATCCAAACATGCTGAATTCT 537
Query 549 TTTCATGAACCTGATGTTTCTACAATGGTGCAACAAGCACCACCATTATACAATTCACAT 608
||| ||||||||||||||||| ||||| |||| ||| |||||||||||||| ||||||||
Sbjct 538 TTTTATGAACCTGATGTTTCTGCAATGCTGCAGCAACCACCACCATTATACGATTCACAT 597
Query 609 GGATATTTACAACAATCAGATCAACAATATTTAATGAATCAAAACATGATGAATTCTTTT 668
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 GGATATTTACAACAATCAGATCAACAAGATTTAATGAATCAAAACATGATGAATTCTTTT 657
Query 669 CAAGGGCCAGATGTTTCTACAACGCAACAACAACAATTGCTGTGCAACTCACATAGGTAT 728
|||||| || ||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 658 CAAGGGGCAAATGTTTCTACAACGCAACAACAACAATTGTTGTGCAACTCACATGGGCAT 717
Query 729 GTACAAGGAAACTTATCAAACATACAATCAGATCAGCAATACTTATCGAATCAAAACGCG 788
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 GTACAAGGAAACTTATCAAACATACAATCAGATCAGCAATACTTATCGAATCAAAATGCG 777
Query 789 ACAAATTTATTTCAAGAACCAAATAATTCTACAATGGTAGATATTGGTCAACAAATCGAA 848
|| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 778 ACGGATTTATTTCAAGAACCAAATAATTCTACAATGATAGATATTGGTCAACAGATCGAG 837
Query 849 GAAGGAAACAATGGATATGCACATCAACCATTGATTGATCATTTTGAGTTACCAAATCAT 908
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 838 GAAGGAAACAATGGATATGCACATCAACCATTGATTGATCCTTTTGAGTTACCAAATCAT 897
Query 909 CATCAGGAGCAGTCTCTATCAGTACCAATATCACAAAATTACCTGTCATATCCGGCATAC 968
||||||||||||| || |||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 898 CATCAGGAGCAGTTTCCGTCAGTACCTATATCACAAAATTACCCGTCATATCCGGTATAC 957
Query 969 GAACATGGTCCAATTGGTTCACATTTTAACATGTACGGCCAGCAACCACCTCCGAGAGTT 1028
||||||||||| ||||||||||||| || ||||||||||| |||||||||||| ||||
Sbjct 958 CAACATGGTCCAGTTGGTTCACATTTCAATATGTACGGCCAACAACCACCTCCGCTAGTT 1017
Query 1029 TCAACTCACAGAGAAGAAGGACATccccc-ccAATGGA-TAGTTACAGACTTGGCCAG 1084
| |||| |||||||||||| ||||| ||| ||| ||| | |||||||||||||||||
Sbjct 1018 TTAACTAACAGAGAAGAAGAACATCTCCCACCAC-GGAAT-GTTACAGACTTGGCCAG 1073
Score = 126 bits (68), Expect = 5e-28
Identities = 206/269 (77%), Gaps = 23/269 (9%)
Strand=Plus/Plus
Query 238 ACAT-GCAACAACAAGAACCACTGGGTGATTCA-CATGGACATTTACAACAATCTGATCA 295
|||| |||||||||| || ||| | ||||| | |||| |||| ||| ||||||||||
Sbjct 445 ACATCGCAACAACAACAATTACTATGCAATTCAGC-TGGATATTTGCAAGAATCTGATCA 503
Query 296 AC-AGGATTTATTAAATCCAAACATGCTGAATTCTTATCAAGAGCCAG-TCGTTTCTACA 353
| ||| ||||||||||||||||||||||||||||| | | || || | | |||||| ||
Sbjct 504 CCAAGG-TTTATTAAATCCAAACATGCTGAATTCTTTTTATGAACCTGAT-GTTTCTGCA 561
Query 354 ACACAGCAGCAACAACAACCCATT-T----T--ACATGGATCATT-AGAACAATCTGATC 405
| | |||||||| || ||| ||| | | |||||||| ||| | ||||||| ||||
Sbjct 562 ATGCTGCAGCAACCACCACC-ATTATACGATTCACATGGAT-ATTTACAACAATCAGATC 619
Query 406 AACAAGGTTTATTAAATCCAAACATGATG--T-CTTCTGA-GC--CAGGTGTTTCTACAT 459
|||||| |||| | |||| |||||||||| | ||| | | | || ||||||||||
Sbjct 620 AACAAGATTTAATGAATCAAAACATGATGAATTCTTTTCAAGGGGCAAATGTTTCTACAA 679
Query 460 TGCAGCAACAACAATTACTATGCAATTCA 488
||| ||||||||||| | ||||| |||
Sbjct 680 CGCAACAACAACAATTGTTGTGCAACTCA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64758703050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5