BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473094
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28680.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2117 0.0
AT1G28685.1 | Symbols: | other RNA | chr1:10077923-10079643 RE... 1199 0.0
> AT1G28680.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr1:10078189-10080029 FORWARD LENGTH=1655
Length=1655
Score = 2117 bits (1146), Expect = 0.0
Identities = 1307/1385 (94%), Gaps = 9/1385 (1%)
Strand=Plus/Plus
Query 1 CCAATCTTAATATTAAGGTATGGCGACACTTGAAATTACCGAAATAGCCCTGGTTCAACC 60
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 15 CCATTCTTATTATTAAGGTATGGCGACACTTGAAATTACCGATATAGCCCTGGTTCAACC 74
Query 61 TTCTCACCAACCACTCTCCAACGACCAAActctctctctctctcATCTTGATAACGATAA 120
||||||||||||||||||||||||||||||||||||||| || ||||| || || |||||
Sbjct 75 TTCTCACCAACCACTCTCCAACGACCAAACTCTCTCTCTTTCCCATCTCGACAATGATAA 134
Query 121 CAACCTCCACGTCAGCTTCCGTTACCTCCGCGTCTA---CTCCTCCTCTTCCACCGTCGC 177
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 135 CAACCTCCACGTCAGCTTCCGTTACCTCCGCGTCTACTCCTCCTCCTCTTCCACCGTCGC 194
Query 178 CGGGA-AAAGCCCCTCTGAAGTCGTCTCCGCCTCTCTCGCCACCGCTCTTGTCCATTATT 236
| ||| |||||||||||| ||||| ||||||||||| ||||||||||| || || || |
Sbjct 195 C-GGAGAAAGCCCCTCTGCCGTCGTATCCGCCTCTCTTGCCACCGCTCTCGTTCACTACT 253
Query 237 ACCCTCTCGCTGGCTCTCTCCGCCGCTCTGCCACCGATAACCGTTTTGAACTATACTGTG 296
||||||| |||||||||||||| ||||||||| |||||||||| ||||||| |||| ||
Sbjct 254 ACCCTCTTGCTGGCTCTCTCCGTCGCTCTGCCTCCGATAACCGATTTGAAC--TACTCTG 311
Query 297 CT--GCTGGTCAAAGCGTGCCTTTAGTCAACGCTTCTGTTAACTGTACGCTTGAGTCCGT 354
|| |||||||||||||||||||||||||||||| | || ||||||||||||||||| ||
Sbjct 312 CTCCGCTGGTCAAAGCGTGCCTTTAGTCAACGCTACAGTGAACTGTACGCTTGAGTCAGT 371
Query 355 CGGGTATTTGGATGGACCCGATCCAGGTTTTGTCGAAAGATTGGTACCGGATCCGACCCG 414
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 372 CGGGTATTTGGATGGACCCGATCCAGGTTTCGTCGAGAGATTGGTACCGGATCCGACCCG 431
Query 415 GGAGGAAGGAATGGTTAATCCGTGTATACTCCAAGTCACGATGTTTCAGTGTGGTGGTTG 474
||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||||||||||||
Sbjct 432 GGAGGAAGGAATGGTCAATCCTTGTATCCTCCAGGTCACTATGTTTCAGTGTGGTGGTTG 491
Query 475 GGTTTTAGGAGCAGCGATTCACCACGCGATCTGTGATGGGTTAGGTGCGAGTCTTTTCTT 534
|||| |||| ||| ||||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 492 GGTTCTAGGTGCATCGATTCATCATGCGATCTGCGATGGGTTAGGTGCGAGTCTGTTCTT 551
Query 535 CAACGCTATGGCGGAATTAGCTCGTGGAGCGACTAAGATCTCGATTGAACCGGTTTGGGA 594
|||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 552 CAACGCTATGGCGGAATTAGCTCGCGGAGCGACAAAGATTTCGATCGAACCGGTTTGGGA 611
Query 595 CAGAGAACGTTTACTTGGTCCAAGGGAGAAGCCTTGGGTTGGAGCTCCGGTTCGTGACTT 654
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 612 CAGAGAACGTTTACTTGGTCCAAGGGAGAAGCCTTGGGTTGGAGCTCCAGTTCGTGACTT 671
Query 655 CTTGAGCCTGGACAAGGACTTTGATCCATATGGACAAGCCATTGGAGACGTCAAGAGAGA 714
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 672 CTTGAGCCTGGATAAGGACTTTGATCCATATGGACAAGCCATTGGAGACGTCAAAAGAGA 731
Query 715 GTGCTTCTTCGTGACCGACGAGTCTTTGGACCAATTGAAGGCTCAATTACTCGAGAAATC 774
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 732 CTGCTTCTTTGTGACCGACGATTCTTTGGATCAATTGAAGGCTCAATTACTCGAGAAATC 791
Query 775 GGGTGTGAATTTCACCACATTCGAAGCTCTAGGTGCTTACATTTGGCGTGCAAAGGTAAG 834
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 792 GGGTCTGAATTTCACCACATTCGAAGCTCTTGGTGCTTACATTTGGCGTGCAAAGGTAAG 851
Query 835 AGCTGCGAAGATTGAGGAAAAGGAGAACGTGAAGTTTGTGTATTCGATAAATATAAGGAG 894
|||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 852 AGCTGCAAAGACTGAGGAAAAGGAGAATGTGAAATTTGTGTATTCGATAAATATAAGGAG 911
Query 895 ATTGATGAATCCACCTTTGCCTAAAGGCTACTGGGGAAACGGATGTGTGCCAATGTATGC 954
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 912 ATTGATGAATCCACCTTTGCCTAAAGGCTACTGGGGAAATGGATGTGTGCCAATGTATGC 971
Query 955 TCAGGTCAAAGCTGGAGAGCTCATTGAGCAACCAATCTGGAAAACTGCAGAGCTCATAAA 1014
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 972 TCAGATCAAAGCTGGAGAACTCATTGAGCAACCAATCTGGAAAACTGCAGAGCTCATAAA 1031
Query 1015 ACAGAGCAAATCCAATGCGAGTGATGAATACGTACGCTCCTTTATCGACTTCCAAGAGCT 1074
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1032 ACAGAGCAAATCCAATACGAGTGATGAATATGTACGCTCCTTTATCGACTTCCAAGAGCT 1091
Query 1075 GCATCACAAAGATGGAATCAATGCCCGTACAGGAGTGACCGGGTTCACGGACTGGCGATA 1134
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1092 GCATCACAAAGATGGAATCAATGCCGGTACAGGAGTGACCGGATTCACGGACTGGCGATA 1151
Query 1135 CTTGGGGCATTCCACGATTGATTTCGGATGGGGAGGACCTGTGACGGTTTTGCCACTATC 1194
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1152 CTTGGGGCATTCCACGATTGATTTTGGATGGGGAGGACCTGTGACGGTTTTGCCACTATC 1211
Query 1195 AAACAAGTTGCTTGGAAGCATGGAACCATGTTTTTTCTTGCCATATTCTACTGATGCTGC 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 AAACAAGTTGCTTGGAAGCATGGAACCATGTTTTTTCTTGCCATATTCTACTGATGCTGC 1271
Query 1255 AGCTGGAAGCAAGAAGGACAGTGGGTTTAAGGTTTTGGTGAATCTGCGCGAATCTGCAAT 1314
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1272 AGCTGGAAGCAAGAAAGACAGTGGGTTTAAGGTTTTGGTAAATCTGCGCGAATCTGCAAT 1331
Query 1315 GCCTGAGTTTAAGGAGGCCATGGAAAAGTTCCACAAAGGTGAATTTGCTCTGTCTTGATC 1374
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1332 GCCTGAGTTTAAAGAGGCCATGGATAAGTTCCACAAAGGTGAATTTGCCCTGTCTTGATC 1391
Query 1375 ACCGA 1379
|||||
Sbjct 1392 ACCGA 1396
Score = 165 bits (89), Expect = 1e-39
Identities = 108/117 (92%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 1379 AAACAAAAAATCATCAACCATTTGTATAACCTTCGTTTTCATTACTGAACAAATGTTTTT 1438
||||| |||||||||||||||||||| || |||| |||| | ||||||||||||||||
Sbjct 1430 AAACACAAAATCATCAACCATTTGTACAA-TTTCGATTTCGTCACTGAACAAATGTTTTG 1488
Query 1439 GAGCTCAGTGTATTTGATTTGAAGAGCGTGAAT-AAGAGAAGCCTTACTGTATGTTT 1494
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1489 GAGCTCAGTGTATTTGATTTGAAGAGCGTGAATTAAGAGAAGCCTTACTGTATGTTT 1545
> AT1G28685.1 | Symbols: | other RNA | chr1:10077923-10079643
REVERSE LENGTH=1534
Length=1534
Score = 1199 bits (649), Expect = 0.0
Identities = 778/840 (93%), Gaps = 10/840 (1%)
Strand=Plus/Minus
Query 1 CCAATCTTAATATTAAGGTATGGCGACACTTGAAATTACCGAAATAGCCCTGGTTCAACC 60
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1254 CCATTCTTATTATTAAGGTATGGCGACACTTGAAATTACCGATATAGCCCTGGTTCAACC 1195
Query 61 TTCTCACCAACCACTCTCCAACGACCAAActctctctctctctcATCTTGATAACGATAA 120
||||||||||||||||||||||||||||||||||||||| || ||||| || || |||||
Sbjct 1194 TTCTCACCAACCACTCTCCAACGACCAAACTCTCTCTCTTTCCCATCTCGACAATGATAA 1135
Query 121 CAACCTCCACGTCAGCTTCCGTTACCTCCGCGTCTA---CTCCTCCTCTTCCACCGTCGC 177
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1134 CAACCTCCACGTCAGCTTCCGTTACCTCCGCGTCTACTCCTCCTCCTCTTCCACCGTCGC 1075
Query 178 CGGGA-AAAGCCCCTCTGAAGTCGTCTCCGCCTCTCTCGCCACCGCTCTTGTCCATTATT 236
| ||| |||||||||||| ||||| ||||||||||| ||||||||||| || || || |
Sbjct 1074 C-GGAGAAAGCCCCTCTGCCGTCGTATCCGCCTCTCTTGCCACCGCTCTCGTTCACTACT 1016
Query 237 ACCCTCTCGCTGGCTCTCTCCGCCGCTCTGCCACCGATAACCGTTTTGAACTATACTGTG 296
||||||| |||||||||||||| ||||||||| |||||||||| ||||||| |||| ||
Sbjct 1015 ACCCTCTTGCTGGCTCTCTCCGTCGCTCTGCCTCCGATAACCGATTTGAAC--TACTCTG 958
Query 297 CT--GCTGGTCAAAGCGTGCCTTTAGTCAACGCTTCTGTTAACTGTACGCTTGAGTCCGT 354
|| |||||||||||||||||||||||||||||| | || ||||||||||||||||| ||
Sbjct 957 CTCCGCTGGTCAAAGCGTGCCTTTAGTCAACGCTACAGTGAACTGTACGCTTGAGTCAGT 898
Query 355 CGGGTATTTGGATGGACCCGATCCAGGTTTTGTCGAAAGATTGGTACCGGATCCGACCCG 414
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 897 CGGGTATTTGGATGGACCCGATCCAGGTTTCGTCGAGAGATTGGTACCGGATCCGACCCG 838
Query 415 GGAGGAAGGAATGGTTAATCCGTGTATACTCCAAGTCACGATGTTTCAGTGTGGTGGTTG 474
||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||||||||||||
Sbjct 837 GGAGGAAGGAATGGTCAATCCTTGTATCCTCCAGGTCACTATGTTTCAGTGTGGTGGTTG 778
Query 475 GGTTTTAGGAGCAGCGATTCACCACGCGATCTGTGATGGGTTAGGTGCGAGTCTTTTCTT 534
|||| |||| ||| ||||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 777 GGTTCTAGGTGCATCGATTCATCATGCGATCTGCGATGGGTTAGGTGCGAGTCTGTTCTT 718
Query 535 CAACGCTATGGCGGAATTAGCTCGTGGAGCGACTAAGATCTCGATTGAACCGGTTTGGGA 594
|||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 717 CAACGCTATGGCGGAATTAGCTCGCGGAGCGACAAAGATTTCGATCGAACCGGTTTGGGA 658
Query 595 CAGAGAACGTTTACTTGGTCCAAGGGAGAAGCCTTGGGTTGGAGCTCCGGTTCGTGACTT 654
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 657 CAGAGAACGTTTACTTGGTCCAAGGGAGAAGCCTTGGGTTGGAGCTCCAGTTCGTGACTT 598
Query 655 CTTGAGCCTGGACAAGGACTTTGATCCATATGGACAAGCCATTGGAGACGTCAAGAGAGA 714
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 597 CTTGAGCCTGGATAAGGACTTTGATCCATATGGACAAGCCATTGGAGACGTCAAAAGAGA 538
Query 715 GTGCTTCTTCGTGACCGACGAGTCTTTGGACCAATTGAAGGCTCAATTACTCGAGAAATC 774
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 537 CTGCTTCTTTGTGACCGACGATTCTTTGGATCAATTGAAGGCTCAATTACTCGAGAAATC 478
Query 775 GGGTGTGAATTTCACCACATTCGAAGCTCTAGGTGCTTACATTTGGCGTGCAAAGGTAAG 834
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 477 GGGTCTGAATTTCACCACATTCGAAGCTCTTGGTGCTTACATTTGGCGTGCAAAG-TAAG 419
Score = 438 bits (237), Expect = 6e-122
Identities = 325/364 (89%), Gaps = 20/364 (5%)
Strand=Plus/Minus
Query 909 CTTTGCCTAAAGGCTACTGGGGAAACGGATGTGTGCCAATGTATGCTCAGGTCAAAGCTG 968
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 364 CTTTGCCTAAAGGCTACTGGGGAAATGGATGTGTGCCAATGTATGCTCAGATCAAAGCTG 305
Query 969 GAGAGCTCATTGAGCAACCAATCTGGAAAACTGCAGAGCTCATAAAACAGAGCAAATCCA 1028
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GAGAACTCATTGAGCAACCAATCTGGAAAACTGCAGAGCTCATAAAACAGAGCAAATCCA 245
Query 1029 ATGCGAGTGATGAATACGTACGCTCCTTTATCGACTTCCAAGAGCT--G-CA---T--CA 1080
|| ||||||||||||| |||||||||||||||||||||||||||| | || | ||
Sbjct 244 ATACGAGTGATGAATATGTACGCTCCTTTATCGACTTCCAAGAGCAAAGTCAAAGTTTCA 185
Query 1081 --CAAAGATGGAAT-CAA-T-GCCC--GT--A-CA--GGAGTGACCGGGTTCACGGACTG 1128
|| ||| | | | | || | || ||||||||||| |||||||||||
Sbjct 184 TGCATTTTTGGTTTTCTCGTTGGGATTGTGTAACACAGGAGTGACCGGATTCACGGACTG 125
Query 1129 GCGATACTTGGGGCATTCCACGATTGATTTCGGATGGGGAGGACCTGTGACGGTTTTGCC 1188
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 124 GCGATACTTGGGGCATTCCACGATTGATTTTGGATGGGGAGGACCTGTGACGGTTTTGCC 65
Query 1189 ACTATCAAACAAGTTGCTTGGAAGCATGGAACCATGTTTTTTCTTGCCATATTCTACTGA 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 ACTATCAAACAAGTTGCTTGGAAGCATGGAACCATGTTTTTTCTTGCCATATTCTACTGA 5
Query 1249 TGCT 1252
||||
Sbjct 4 TGCT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74698410960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5