BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473098
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28760.1 | Symbols: | Uncharacterized conserved protein (DU... 2146 0.0
> AT1G28760.1 | Symbols: | Uncharacterized conserved protein (DUF2215)
| chr1:10103158-10104588 FORWARD LENGTH=1431
Length=1431
Score = 2146 bits (1162), Expect = 0.0
Identities = 1344/1432 (94%), Gaps = 11/1432 (1%)
Strand=Plus/Plus
Query 1 ATGGCTActtcttcttcctttcttcgtcttcctcatcgaatctggtttctccttcctctt 60
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTACTTCTTCTTCTTTTCTTCGTCTTCCTCATCGAATCTGGTTTCTCCTTCCTCTT 60
Query 61 gttgtctttctcttGTTATCCTACGCAGCGGCGCTCAAAAGTGTTGGTCCTAGCGAGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 61 ATTGTCTTTCTCTTGTTATCCTACGCGGCGGCGCTCAAAAGTGTTGGTCCCGGCGAGCCA 120
Query 121 GCTCTGAATGTTAGCCTTA-GTCCGTGTGAGCGAATCCAAGTCTCAGGCTATTCGAGAAC 179
||||||||| ||||||||| || |||| |||||||||||||| |||||||||||||||||
Sbjct 121 GCTCTGAATATTAGCCTTAGGT-CGTGCGAGCGAATCCAAGTTTCAGGCTATTCGAGAAC 179
Query 180 CAAATTAGGGAAATTCGCTAACTCTCTTAGGGTAAACTTAGTTCCAATCCCAGAGAAGCT 239
||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 180 CAAATTAGGGAAATTCGCTAACTCTCTCAGAGTAAACTTAGTACCAATCCCAGAAAAGCT 239
Query 240 ACACATCAAAATTCAAGTTTGTGTTCACCGGAATGCTACACTTGGAATGTGTCAGTGTGA 299
|||| ||||||| ||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 240 ACACCTCAAAATCCAAGTTTGTGTTCACCGAAATGCTACACTTGGAATGTGCCACTGTGA 299
Query 300 GAAATCAAATTGGAAAAATCTTCAGAGCAGCTCTGTAATATCTCCATATGATAAACAATA 359
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 300 GAAATCTAATTGGAAAAATCTCCAGAGCAGCTCTGTTATATCACCATATGATAAACAATA 359
Query 360 CATTGATGTGAGATTCAGTGGTAGTGAATATGAATCGTCTCGTTCACTGGTTACAATCAA 419
||||||||||||||||| ||||||||||||| | |||||||||||| || |||| ||||
Sbjct 360 CATTGATGTGAGATTCACTGGTAGTGAATATCAGTCGTCTCGTTCAATGATTACGGTCAA 419
Query 420 CGTTACAGAAGAGTTTCATCAATGGCGGATTTTTTGTCTTGTGGCGGGATTGATTGTGAT 479
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 TGTTACAGAAGAGTTTCATCAATGGCGGATTTTTTGTCTTGTAGCGGGATTGATTGTGAT 479
Query 480 TTTGTTAGCACCTGTTGTTAGCAGTTGGCTACCTTTTTACTATACGAGTTCTATGGCGGT 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TTTGTTAGCACCTGTTGTTAGCAGTTGGCTACCGTTTTACTATACGAGTTCTATGGCGGT 539
Query 540 TGGTGTTTTTCTCGTTGTTTTGATTATTATCTTCCAGGTTATGAGGCTATTGCCTACTGG 599
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 540 TGGTGTTTTTCTCGTTGTTTTGATTATTATCTTCCAGGTTATGAGGTTATTACCTACTGG 599
Query 600 GAGGAAAAATGTTATGTATCTTGCGTTTTATGGATCTGTGGTTGGTGCTGGATCTTTCAT 659
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 GAGGAAGAATGTTATGTATCTTGCGTTTTATGGATCTGTTGTTGGTGCTGGATCTTTCAT 659
Query 660 TTTACATCAGTTCTCAATGATGGTGAATATGATTCTTGTTAATTTCGGGTTGAGTGAGGA 719
| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TCTACATCAATTCTCAATGATGGTGAATATGATTCTTGTTAATTTTGGGTTGAGTGAGGA 719
Query 720 TATGTATAATCCGGTAGCGATTCTTGTGCTTGTTGGGGTAGTTATTACTGGAGCTGCTTT 779
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 720 TATGTATAATCCGGTAGCGATACTTGTGCTTGTTGGGGTGGTTATTACTGGAGCTGCTTT 779
Query 780 TGGATTCTGGACTGTGAGGAAATTTGTTGTTTCGAAAGATGGAGGAGGTGTGGATGCTAG 839
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGATTTTGGACTGTGAGGAAGTTTGTTGTTTCGAAAGATGGAGGAGGTGTGGATGCTAG 839
Query 840 TGTTGCACAGTTTGTGAAATGGGCGATGCGGTCTGTTGCTGCTACGTTTATTTTACAGAG 899
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 840 TGTTGCACAGTTTGTGAAATGGGCTATGCGTTCTGTTGCTGCTACGTTTATTTTGCAGAG 899
Query 900 TAGTCTTGATACTCCTATGGCGATGGGAGCTTTTGTTTTAGCTAGCTTGCTTGGTTTTCT 959
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 900 TAGTCTTGATACTCCTATGGCCATGGGAGCTTTTGTTTTAGCTAGCTTGTTTGGTTTTCT 959
Query 960 TGTTAGTAAAACGAAAAGCTTTGTAGCTCAAAGTCATTGGCTGGTTTCTGCTAGTGAGAC 1019
|||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 960 TGTTAGTAAAACGAAAAGCTTTGTAGGGAAAAGTCATTGGTTGGTTTCTGCTGGTGAGAG 1019
Query 1020 ACGTCCAATAATGCATGGACGAGCTGAGTTCCTTAGCCGCCCTGGGGGAGATGGACTGTG 1079
|||||| ||||||||||||||||||||||||||||| |||||||| || | |||||||||
Sbjct 1020 ACGTCCGATAATGCATGGACGAGCTGAGTTCCTTAGTCGCCCTGGAGGTGGTGGACTGTG 1079
Query 1080 GAAGAGTGCTAGGAGAGTACCTTCATATTCCGGCTCTCCTTCTTACGATGTGA--G---- 1133
||||||||||| ||| |||||||| |||||||||||||||||||| ||||||| |
Sbjct 1080 GAAGAGTGCTAAGAGTGTACCTTCGTATTCCGGCTCTCCTTCTTATGATGTGATTGTGAG 1139
Query 1134 CTCACCATCTTCAGTTAACCGGAGAACACCAATCGGAAATCAGGATTACTATTCTACATT 1193
|||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 1140 CTCACCGTCTTCAGTTAACCGGAGGATACCGATCGGAAATCAGGATTACTATTCTACATT 1199
Query 1194 CCACAGGACGCCAAACCGGAAGAAGATGTCAAAGAGAGAGTATGAAGAATTGACACAAGA 1253
||| | ||||||||||||||||| |||||| |||||||||||||| || |||||||||||
Sbjct 1200 CCATACGACGCCAAACCGGAAGAGGATGTCGAAGAGAGAGTATGACGAGTTGACACAAGA 1259
Query 1254 AACGACACGGGAAGCAATGGCAGGACTTGCAGCTTCTCCAGGATTCAGTGATTGGTTAGT 1313
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 AACGACACGAGAAGCAATGGCAGGACTTGCAGCTTCTCCAGGATTTAGTGATTGGTTAGT 1319
Query 1314 TGAGCATGCTGACAGAATCAAGTTGCTTCCCACTGA--G-AGCTATGATGACGAATTGGG 1370
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1320 TGAGCATGCTGACAGAATCAAGTTGCTTCCCACTGATAGTAGCTATGATGACGAATTGGG 1379
Query 1371 TAGTGAATCAGATTCAACCGGTGAACAATCTTGGACAGGTTTTTTCTGGTAG 1422
||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1380 TAGTGAATCAGATTCAACCGGTGAACAATCTTGGACACGTTTCTTCTGGTAG 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5