BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473105
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29010.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1448 0.0
AT2G34010.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 71.3 2e-11
> AT1G29010.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G34010.1);
Has 18 Blast hits to 17 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10117715-10119085
FORWARD LENGTH=1015
Length=1015
Score = 1448 bits (784), Expect = 0.0
Identities = 942/1016 (93%), Gaps = 19/1016 (2%)
Strand=Plus/Plus
Query 1 ATGTGTAGTAAAACGAGTAGTGTAAGTTATGGAAACAGAGAAgatgatgatgatgatgat 60
||||||||||| |||||||||||||||||||||||||||| | | ||||||||| | ||
Sbjct 1 ATGTGTAGTAAGACGAGTAGTGTAAGTTATGGAAACAGAG-A-A-GATGATGAT-A--AT 54
Query 61 TACTCTGT-CTTGTGTCCGAAGAAACAGAAACATAATAATGGAGGAAGAAAAAGAGTCCC 119
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 55 TACTC-GTCCTTGTGTCCGAAGAAACAGAAACATAATAATGGAGGAAAAAAAAGAGTCCC 113
Query 120 TCGTAGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCTCGGAGAACAACACATCTC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ACGTAGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCTCGGAGAACAACACATCTC 173
Query 180 CACGGCCGCACCATTTTCTCGTCCTCACCCTCCTCCCCTGGAGAAGTCTCCAA-CATTCA 238
||||||||||||||| ||| || ||| |||||| |||||||||||||||||| || |||
Sbjct 174 TACGGCCGCACCATTTACTCTTCATCATCCTCCTTCCCTGGAGAAGTCTCCAACCA-TCA 232
Query 239 CTGATAGAACCGGTCTGGTTTACCCGTTTTCGTCTTATTTCACTGCTC-GATCTTTCCCT 297
|||| ||||||||||| |||||||||||||||||||||||| |||| | |||||||||||
Sbjct 233 CTGACAGAACCGGTCTAGTTTACCCGTTTTCGTCTTATTTCTCTGC-CGGATCTTTCCCT 291
Query 298 AGTGATTTGATTCCTCCGGCTCCAGTGTTTCAGAGGAAACATGATTCGTCTCTTCACTAC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AGTGATTTGATTCCTCCGGCTCCAGTGTTTCAGAGGAAACATGATTCGTCTCTTCACTAC 351
Query 358 TTCCCTCCGATGAATCTACCAAATCAAGGATCTGGAGGATTTTATCAGTTTATAGATCCT 417
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 352 CTCCCTCCGATGAATCTACCAAAACAAGGATCTGGAGGATTTTATCAGTTTATAGAGCCT 411
Query 418 CCTTCAAGCCAAACATCTTGTCTTGACAATGTCACTCAATTTCTAGATGAAGAAAAGATC 477
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 412 CCTTCAAGCCAAACATCTTCTCTTGACAATGTCACTAAATTTCTAGATGAAGAAAAGATC 471
Query 478 TCGGCTGCGAAAAGGCCATGGCATCTTATGGCAGATACCGCGAAATGTAGTGTTGGACCG 537
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 472 TCGTCTGCGAAAAGGCCATGGCATTTTATGGCAGATACCGCGAAATGTAGTGTTGGACCG 531
Query 538 A-CTATAACTAGCTCAAGAGATGCTAAACAAATCAGATCACTAGACCTAAGATTGAAAAG 596
| | | ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 532 AGC-ACAACTATCTCAAGAGATGCTAAACAAACCAGATCACTAGACCTAAGATTGAAAAA 590
Query 597 TCATATTCAAGATTCAGGAACCACAATTAGGAATCCAATCACTATTGATTCTCCTTCTTC 656
|||| | |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 591 TCATGTCCAAGATTCAGGAACCACAATAAGAAATCCAATCACTATTGATTCTCCTTCTTC 650
Query 657 AGCCACTGTTCCTACAACGATTTTTCCTAATT-GTCCACTCGATTTCCCGCGCTTTTTAC 715
||||| | |||||||||||| ||| | ||| ||| ||||| |||||||||||||||||
Sbjct 651 AGCCAGTCCTCCTACAACGATATTTGCAAATCCGTC-ACTCGGTTTCCCGCGCTTTTTAC 709
Query 716 AGAGAGAAGAGGATGATCATGAAATCATACAACGAAAGAGCGTTACAAATTTTCCCTTAA 775
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||
Sbjct 710 AGAAAGAAGAGGATGATCATGAAATTATACAACGAAAGAGCGGTACAAATTTTCCTTTAA 769
Query 776 ACAGAAAACCATTCTACAGCTTCTTGCCCTCAAATGACCAGAGTATTCGCGACCAAGATC 835
||| ||||||||||||||||||||| ||| | |||||||||| |||||||||||||||||
Sbjct 770 ACAAAAAACCATTCTACAGCTTCTTACCCGCGAATGACCAGATTATTCGCGACCAAGATC 829
Query 836 GATCCCTAAGCTTGAGAACAGAGAGATATGACACAGTCCCTGATCACGGCATTGATCTTC 895
|||| | ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 830 GATCATTCAGCTTGAGAACCGAGAGATATGACACAGTCCCTGATCATGGCATTGATCTTC 889
Query 896 GCCTTAAGTTATAATAAAATTATT-TTCTAAGCAATTTTCAAAACTTTGAGTCTTTACTC 954
||||||||||||||||| || || ||||||||| |||||||||||| || ||||||| |
Sbjct 890 GCCTTAAGTTATAATAAG-TT-TTGTTCTAAGCAGTTTTCAAAACTTCGAATCTTTACAC 947
Query 955 CATGAGTTTGTAGTTTCGGATAAATATGTAACAAAAGATATGCCAAAGACTTGGAT 1010
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 948 CATGAGTTTGTAGTTTTGGATAAATATGTAACAAAAGATATGCCAAAGACTTGGAT 1003
> AT2G34010.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G29010.1);
Has 32 Blast hits to 31 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 25; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:14368856-14370438
FORWARD LENGTH=1221
Length=1221
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 124 AGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCT 161
||||||||||||||||||||||||||||||||||||||
Sbjct 122 AGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCT 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5