BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473111
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29050.1 | Symbols: TBL38 | TRICHOME BIREFRINGENCE-LIKE 38 |... 2200 0.0
> AT1G29050.1 | Symbols: TBL38 | TRICHOME BIREFRINGENCE-LIKE 38
| chr1:10136230-10139208 REVERSE LENGTH=1415
Length=1415
Score = 2200 bits (1191), Expect = 0.0
Identities = 1346/1420 (95%), Gaps = 14/1420 (1%)
Strand=Plus/Plus
Query 1 TATATATATGTATATGCATTGGTGCATATATACATAGACAAATGGGTGTATAAAAGCTTG 60
||||| |||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 3 TATATGTATGTACATGCATTAGTGCATATATACATACACAAATGAGTGTATAAAAGCTTG 62
Query 61 AACCCATCAAACAAGCTTCATCACAAAAACCCAAAACCTTTGATATTTGTTTAA-TACAA 119
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 63 AACCCATCGAACAAGCTTCATCACAAAAACCCAAAACCTTTGATATTTGTCTAATTTTAC 122
Query 120 AAAGATGGGTTTCAAACTCATCTCTCTCCTCCTCCTTTTTCTTCCACTTCTAACAGTCAC 179
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 123 AAAGATGGGTTTCAAACTCATCTCTCTCCTCCTTCTTTTTCTTCCACTTCTAACAGTCAC 182
Query 180 AATCTTGTCGGGAACCGAGCAAGCCTTCGCTTCCGACAAGACACTCCTCGTGACCGGCAG 239
||||||||||||| |||||| ||||| |||||||||||| ||||||||||||||||| |
Sbjct 183 AATCTTGTCGGGAGTCGAGCAGGCCTTTGCTTCCGACAAGGCACTCCTCGTGACCGGCCG 242
Query 240 CAACAGCACGGCTGACGGTGGAATGTCGTCACTGAGAGGGAAGAAACAGAGGAGAGCATC 299
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 243 CAACATCACGGCTGACGGTGGAAGGTCGTCACTGAGAGGGAAGAAGCAGAGGAGAGCATC 302
Query 300 AGGATGTAACTTGTTCCAAGGTCGATGGGTGTTCGATGCTTCTTACCCTTTCTATGATTC 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 303 AGGATGTAACTTGTTCCAAGGCCGATGGGTGTTCGATGCTTCTTACCCTTTCTATGACTC 362
Query 360 GTCCACGTGTCCTTTCATCGACGGCGAGTTTGACTGTCTCAAGTTCGGCCGACCAGACAA 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GTCCAAGTGTCCTTTCATCGACGGCGAGTTTGACTGTCTCAAGTTCGGCCGACCAGACAA 422
Query 420 AGAGTTCCTCAAGTACTCTTGGCAACCTGAATCTTGCACCATCCCAAGGTTCGACGGTGG 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ACAGTTCCTCAAGTACTCTTGGCAACCTGAATCTTGCACCATCCCAAGGTTCGACGGTGG 482
Query 480 GGCGTTTCTGAGGAAATACAGAGGGAAACGAGTCATGTTCGTCGGAGACTCACTGAGTTT 539
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 483 GGCATTTCTGAGGAAATACAGAGGAAAACGAGTCATGTTCGTCGGAGACTCACTGAGTTT 542
Query 540 AAACATGTGGGAATCGTTGGCCTGTATGATACATGCGTCGCTACCAAACGCCAAGACCAC 599
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 543 AAACATGTGGGAATCGTTGGCCTGTATGATCCATGCGTCGGTACCAAACGCCAAGACCAC 602
Query 600 TTTTCTCAAGCGTACCCCACTCTCTACTCTCACTTTCCAGGAATATGGAGTAACGTTACA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 603 TTTTCTCAAGCGTACCCCACTCTCTACTCTCACTTTCCAGGAATATGGAGTAACGTTATA 662
Query 660 CCTATATAGAACACCATACATAGTGGATATATCCAAAGAGAGAGTAGGGCGTGTGCTTAA 719
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 663 TCTATATAGAACACCATACATAGTAGATATATCCAAAGAGAGAGTTGGGCGTGTGCTTAA 722
Query 720 CCTTGGAGCTATTGAAGGAGGTGCTAATGCTTGGAAAAACATGGACGTTCTTGTCTTCAA 779
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 723 CCTTGGAGCTATTGAAGGAGGTGCTGATGCTTGGAAAAACATGGACGTTCTTGTCTTCAA 782
Query 780 CTCTTGGCATTGGTGGACTCATAAAGGCCAATCTCAAGGGTGGGATTATATTAGAGATGG 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 783 CTCTTGGCATTGGTGGACTCACAAAGGCCAATCTCAAGGGTGGGATTATATTAGAGATGG 842
Query 840 GTCGTCTTTGGTGAGAGACATGAACCGTCTTGATGCTTTCTACAAAGGACTCAGTACTTG 899
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 843 GTCGTCTTTGGTGAGAGACATGAACCGTCTTGACGCTTTCTACAAAGGACTCAGTACTTG 902
Query 900 GGCTAGATGGGTTGATCAAAACGTCGATACTACCAAAACTCGAGTTTTCTTCCAAGGCAT 959
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 903 GGCTCGATGGGTTGATCAAAACGTCGATACGGCCAAAACTCGAGTTTTCTTCCAAGGCAT 962
Query 960 TTCTCCCACTCATTACGAGGGAAGGGAATGGAACGAGCCAAGGAAGAGTTGTAGTGGGCA 1019
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 963 TTCTCCCACTCATTACGAGGGAAGGGAATGGAACGAGCCGAGGAAGACTTGTAGTGGGCA 1022
Query 1020 AATGCAGCCGTTGGGTGGATCAAGTTACCCAAGTGGTCAGCCTCCATC-TGCGGGAGTTG 1078
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |
Sbjct 1023 AATGCAGCCGTTGGGTGGATCAAGTTACCCAAGTGGTCAGCCTCCATCCT-CAGGAGTAG 1081
Query 1079 TGTCCAAAGTGTTGAATTCGATGAAAAAGCCAGTGACCTTGCTCGATATCACCACTTTGT 1138
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1082 TGTCGAAAGTGTTGAGTTCGATGAAAAAGCCAGTGACCTTGCTCGATATCACAACTTTGT 1141
Query 1139 CCCAGTTGAGAAAAGATGCTCATCCTTCTTCTTACGGTGGCAATGGAGGAACAGATTGCA 1198
| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1142 CTCAGTTGAGAAAAGATGCTCATCCTTCTTCTTATGGTGGCGATGGAGGAACAGATTGCA 1201
Query 1199 GCCATTGGTGCCTCCCCGGGTTGCCAGATACTTGGAACCAACTTCTCTACGCAGCCCTTA 1258
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 1202 GCCATTGGTGCCTCCCAGGGTTGCCTGATACATGGAACCAACTTCTCTACGCAGCTCTTA 1261
Query 1259 CAATGTGAAGTAT-AAGAATCACAACTATAAAGAAAGTGCATAACACCTTTATTCTGTAA 1317
| ||||||||| | |||| | || | | |||||||||||||||||||||||||||||||
Sbjct 1262 CGATGTGAAGTGTTAAGA-T-ACTA--A-AAAGAAAGTGCATAACACCTTTATTCTGTAA 1316
Query 1318 ATGACATTCGTAAATCGTT-TAGTGTTGTGTGATGCAATAGaaaaaaagattcaaaaaca 1376
|||||||||||||||| || |||||||||||||||| |||||||| | |||| | || ||
Sbjct 1317 ATGACATTCGTAAATC-TTCTAGTGTTGTGTGATGCTATAGAAAACA-GATTTATAA-CA 1373
Query 1377 aaaGAGACATTCTCAGTATAAA-TAACACATTGATTTGGT 1415
|||||||||||||||||||||| |||||||||| ||||||
Sbjct 1374 AAAGAGACATTCTCAGTATAAAATAACACATTGGTTTGGT 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5