BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473113
Length=692
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29070.1 | Symbols: | Ribosomal protein L34 | chr1:10149791... 1002 0.0
> AT1G29070.1 | Symbols: | Ribosomal protein L34 | chr1:10149791-10151360
FORWARD LENGTH=772
Length=772
Score = 1002 bits (542), Expect = 0.0
Identities = 629/669 (94%), Gaps = 13/669 (2%)
Strand=Plus/Plus
Query 1 AAGAAGAGGGAACTTGAATGGCTTCCTTATCCACTTCCGTTGTTGCTTCGGCTTCGTCGC 60
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 77 AAGAAGTGGGAACTTGAATGGCTTCCTTATCCACTTCCGTTGTAGCTTCGGCTTCGTCGC 136
Query 61 GTTTATGGAATCCTGCTGCTTCCCACGGCATGATTTGCGTTCCTTCTGCTTCGCTTTCTC 120
||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 137 GTTTATGGAATCCTGCTGCCTCCAACGGCAAGATTTGCGTTCCTTCTGCTTCGCTTTCTC 196
Query 121 TGCGTACGGGTTCTAGAC-AATCTCCGTCGTCTTCTCTCCTCACCTCTTCCGCTTCTTCG 179
|||||||||||| ||||| | | ||||| |||| ||||| |||||||||||||||
Sbjct 197 TGCGTACGGGTTGTAGACGGA-GT---TCGTC--CTCT-CTCACTTCTTCCGCTTCTTCG 249
Query 180 CAATTGCTTCATTGCTCGTTTCTCTCCTCACCTCTTTCCCTAGCGTCTCCGTTTTCTGGT 239
|||||||||||||||||||||||||| || ||| |||||||||||||||| |||||||||
Sbjct 250 CAATTGCTTCATTGCTCGTTTCTCTCGTCGCCTGTTTCCCTAGCGTCTCCATTTTCTGGT 309
Query 240 TTGTCCATTGCGTTTGATCTCAGCAGTCAAACTAGTGGACTGAACAGCCAGAGACGCAGA 299
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 310 TTGTCCATTGCGTTTGATCTCAGCAGTCAAACTAGTGGACTGAATGGCCAGAGACGCAGA 369
Query 300 GGCCTTGTGGTGAGAGCTGGAAAAGCTGCTCTGTGTCAAACAAAGAGAAGCAGATCAAGA 359
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 370 GGCCTTGTGGTTAGAGCTGGAAAAGCTGCTCTGTGTCAAACTAAGAGAAGCAGATCAAGA 429
Query 360 AAATCTCTAGCTAGGACTCATGGTTTCCGTAGAAGGATGAGGACCACTAGTGGTAGAGCA 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 430 AAATCTCTAGCTAGGACTCATGGTTTCCGTAGAAGGATGAGGACCACTAGCGGTAGAGCA 489
Query 420 ACCATAAAGCGCCGACGTGCCAAGGGACGTTGGAACCTCTGTCCCAAGTCCAACCCTAGC 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 ACCATAAAGCGTCGACGTGCCAAGGGACGTTGGAACCTCTGTCCCAAGTCCAACCCTAGC 549
Query 480 AGCGGCAAACGGGCTTGAAGTTTGTTTCTCTCTTCAGTCTATCTGTAATCTTGTTTGATA 539
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 550 AGCGGCAAACGGGCTTGAAGTTTGTTTCTCTCTTCACTCTATCTGTAATCTTGTTTCATG 609
Query 540 TGCTTATTTTTATTCCGCCAGAAGATACAATGAGAAACATGGTTCGTTGAGCTCTTTTCT 599
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TGCTT-TTTTT---CCACCAGAAGATACAATGAGAAACATGGTTCGTTGAGCTCTTTTCT 665
Query 600 GTGTTT-AACTCTTTTGCATCCTTGATTCGTTTATAAATCAATGTTCTTGGAATCCATCA 658
| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 666 GCGTTTTAACTCTCTTGCATCCTTGATTCGTTTATAAATCAATGTTCTTGGAATTCATCA 725
Query 659 CAAGTACTA 667
|| ||||||
Sbjct 726 CATGTACTA 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33506176049
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5