BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473114
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29080.1 | Symbols: | Papain family cysteine protease | chr... 1476 0.0
AT1G29090.1 | Symbols: | Cysteine proteinases superfamily prot... 793 0.0
AT1G29110.1 | Symbols: | Cysteine proteinases superfamily prot... 353 2e-96
> AT1G29080.1 | Symbols: | Papain family cysteine protease | chr1:10157494-10158674
REVERSE LENGTH=1041
Length=1041
Score = 1476 bits (799), Expect = 0.0
Identities = 966/1046 (92%), Gaps = 13/1046 (1%)
Strand=Plus/Plus
Query 1 ATGGTCTTAGTAGAGTTTGTGT-TAGTTGTTTTAACCAT-TTTTTCCATGGATCTAAAGA 58
|||| ||| ||||||||||||| | |||||| ||||||| ||||| ||||||||||||||
Sbjct 1 ATGGACTTCGTAGAGTTTGTGTGT-GTTGTTCTAACCATATTTTT-CATGGATCTAAAGA 58
Query 59 TCTCCGAAGCCACATCTCGTGTCGCTTTGCACGAGCCA--A-CCATTTTTTATTACCACC 115
|||| ||||| |||||||||||||||||| || ||||| | ||||| || |||||||||
Sbjct 59 TCTCTGAAGCTACATCTCGTGTCGCTTTGTACAAGCCATCATCCATTGTTGATTACCACC 118
Query 116 AGAAATGGATGA-TAAATTTTTCTCGAGTTTATGATGATGAATTTGAGAAACAGATGAGG 174
|| ||||||||| | || ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 119 AGCAATGGATGATTCAA-TTTTCTCGAGTTTATGACGATGAATTTGAGAAACAGTTGAGG 177
Query 175 CTTGAAGTGTTCACGGAAAATTTGAAGTTCATTGAGAACTTCAATAATATGGGGAGTCAA 234
||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct 178 CTTCAAGTGCTCACGGAAAATTTGAAATTCATTGAGAGCTTCAATAATATGGGGAATCAA 237
Query 235 AGCTACAAACTTGGTGTCAACAAGTTCACGGATTGGACTAAAGAGGAGTTCCTTGCCACC 294
||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 238 AGCTACAAACTTGGTGTTAACGAGTTCACAGATTGGACTAAAGAGGAGTTCCTTGCCACC 297
Query 295 CACACCGGTCTCAGTGGCATTAATGTAACTTCACCTTTCGAAGTGGTTAATGAAACGACG 354
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| |
Sbjct 298 TACACCGGTCTCAGAGGCGTTAATGTAACTTCACCATTCGAAGTGGTTAATGAAACGAAG 357
Query 355 CCAGCTTGGAATTGGACCGTCAGTGATGTCCTTGGCACGACCAAAGATTGGAGAAACGAA 414
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 CCAGCTTGGAATTGGACCGTCAGTGATGTCCTTGGCACGAACAAAGATTGGAGAAACGAA 417
Query 415 GGAGCTGTAACACCTGTTAAATACCAAGGAGAATGTGGAGGTTGTTGGGCGTTCTCAGCG 474
||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||
Sbjct 418 GGAGCCGTAACACCTGTGAAATCCCAAGGAGAATGTGGAGGTTGTTGGGCATTCTCAGCG 477
Query 475 ATAGCAGCGATGGAAGGTTTGACAAAGATTGCCCGTGGAAACCTCATATCACTATCTGAA 534
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 ATAGCAGCGGTGGAAGGTCTGACAAAGATTGCCCGTGGAAACCTCATATCACTATCCGAA 537
Query 535 CAACAACTTCTAGATTGCGCCAGAGAGCAGAACAATGGTTGCAAGGGAGGAACA-ATGAT 593
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 538 CAACAACTTCTAGATTGCACCAGAGAGCAGAACAATGGTTGCAAGGGAGGAACATTTG-T 596
Query 594 AGAA-GCTTTCAACTATATAGTAAAAAACGGAGGCGTTTCTTCAGAAAACGCATACCCTT 652
| || ||||||||||| ||| | ||| || ||||| ||||||||||||||| ||||||||
Sbjct 597 A-AATGCTTTCAACTACATAATTAAACACCGAGGCATTTCTTCAGAAAACGAATACCCTT 655
Query 653 ACCAAGTGAAAGAGGGCCCATGCCGGTCCAACGATATACCCGCCATAGTAATCAGAGGGT 712
||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||
Sbjct 656 ACCAAGTGAAAGAGGGCCCATGCCGGTCCAACGCTAGACCCGCCATACTAATCAGAGGGT 715
Query 713 TCGAAAACGTTCCAAGCAACAACGAACGTGCGTTACTCGAAGCCGTATCAAGACAACCTG 772
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 716 TCGAAAACGTTCCAAGCAACAACGAGCGTGCGTTACTCGAAGCCGTGTCAAGACAACCTG 775
Query 773 TCGCAGTGGACATTGACGCGAGTGAGACTGGTTTTATTCATTACTCAGGGGGAGTGTACA 832
||||||||| |||||| || |||||| | ||||| |||||||||| |||||||||||||
Sbjct 776 TCGCAGTGGCCATTGATGCCAGTGAGGCCGGTTTCGTTCATTACTCTGGGGGAGTGTACA 835
Query 833 ATGCGCGGGACTGTGGGACTAGCGTGAATCATGCAGTGACATTCGTTGGGTACGGTACGA 892
|||||||| ||||||||||||| || |||||||||||||| ||||||| ||||| ||||
Sbjct 836 ATGCGCGGAACTGTGGGACTAGTGTAAATCATGCAGTGACGCTCGTTGGCTACGGCACGA 895
Query 893 GCCAGGAAGGTATCAAGTACTGGTTGGCTAAGAACTCTTGGGGTAAGACTTGGGGAGAGA 952
||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCCCGGAAGGGATGAAGTACTGGTTGGCTAAGAACTCTTGGGGTAAGACTTGGGGAGAGA 955
Query 953 ATGGTTACATTAGGATTCGTAGAGATGTGGAGTGGCCTCAAGGCATGTGTGGTGTAGCTC 1012
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ATGGTTACATTAGAATTCGTAGAGATGTGGAGTGGCCTCAAGGCATGTGTGGTGTAGCTC 1015
Query 1013 AGTATGCTTCTTATCCGGTTGCGTAA 1038
||||||||||||||||||||||||||
Sbjct 1016 AGTATGCTTCTTATCCGGTTGCGTAA 1041
> AT1G29090.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:10162983-10164452 REVERSE LENGTH=1255
Length=1255
Score = 793 bits (429), Expect = 0.0
Identities = 843/1036 (81%), Gaps = 55/1036 (5%)
Strand=Plus/Plus
Query 32 TAACCATTTTTTCCATGGATCT-AAAGATCTC-CGAAGCCACATCTCGTGTCGCTTTGCA 89
|||| ||| |||||||| |||| |||| |||| | ||||||||||||||||| | || ||
Sbjct 126 TAACAATTCTTTCCATGAATCTAAAAG-TCTCTC-AAGCCACATCTCGTGTCACCTTCCA 183
Query 90 CGAGCCAACCATTTTTTATTACCACCAGAAATGGATGA-TAAATTTTTCTCGAGTTTATG 148
|||||| | | || | | |||| ||| ||||||||| | || |||||||||||
Sbjct 184 CGAGCCGATCGTTGCTGAACACCATCAGCAATGGATGACT-CGGTTCTCTCGAGTTTA-C 241
Query 149 A-TGATGAATTTGAGAAACAGATGAGGCTT-GAAGTGTTCACGGAAAATTTGAAGTTCAT 206
| ||| || | |||||||| |||| | || || ||||||| | |||| |||||||||||
Sbjct 242 AGTGACGAGCTCGAGAAACAAATGA-GATTCGATGTGTTCAAGAAAAACTTGAAGTTCAT 300
Query 207 TGAGAACTTCAATAA-TATGGGGAGTCA-AAGCTACAAACTTGGTGTCAACAAGTTCACG 264
|||||| || ||||| | ||||| | | || |||||| |||||||||||| |||| ||
Sbjct 301 TGAGAAATTTAATAAGAAAGGGGA-T-AGAACCTACAAGCTTGGTGTCAACGAGTTTGCG 358
Query 265 GATTGGACTAAAGAGGAGTTCCTTGCCACCCACACCGGTCTC-AGTGGCATTAATGTAAC 323
|||||||| | |||||| ||| ||||||| |||||||| ||| || || |||| | |
Sbjct 359 GATTGGACCAGAGAGGAATTCATTGCCACTCACACCGGCCTCAAG-GGGGTTAACGGGA- 416
Query 324 TT-CA-CCTTTCGAAGTGGTTAATGAAACGACGCCAGCTTGGAATTGGACCGTCAGTGAT 381
|| || ||| | ||| | || |||||| || || |||||||||||| |||||||||
Sbjct 417 TTCCATCCTCT-GAATTTGTCGATGAAATGATACCTTCTTGGAATTGGAATGTCAGTGAT 475
Query 382 GTC-CTTGG-C---ACGACCAAAGATTGGAGAAACGAAGGAGCTGTAACACCTGTTAAAT 436
||| | ||| | | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 476 GTCGC-TGGCCGTGA-GACCAAAGATTGGAGATACGAAGGAGCTGTAACACCTGTTAAAT 533
Query 437 ACCAAGGAGAATGTGGAGGTTGTTGGGCGTTCTCA-GCGATAGCAGCGATGGAAGGTTTG 495
||||||| |||||||| |||||||||| |||||| ||| | |||||| |||||||||||
Sbjct 534 ACCAAGGCCAATGTGGATGTTGTTGGGCATTCTCAAGCG-TCGCAGCGGTGGAAGGTTTG 592
Query 496 ACAAAGATTGCCCGTGGAAAC--C-TCA-TATCACTATCTGAACAACAACTTCTAGATTG 551
|||||||||| ||||||| | | | ||||| | |||||||||||||||||||||||
Sbjct 593 ACAAAGATTGT---TGGAAACAACCT-AGTATCATTGTCTGAACAACAACTTCTAGATTG 648
Query 552 CGCCAGAGAGCA-GAACAATGGTTGCAAGGGAGGAACAATGAT-AGAAGCTTTCAACTAT 609
|| |||||||| || ||| |||||||| || |||| |||| | ||| ||||||| ||||
Sbjct 649 CGACAGAGAGCGTGA-CAACGGTTGCAACGGTGGAATAATG-TCAGACGCTTTCAGCTAT 706
Query 610 ATAGTAAAAAACGGAGGCGTTTCTTCAGAAA-ACGCATACCCTTACCAAGTGAAAGAGGG 668
||| | |||||| ||||| || | ||||| | ||||||||||||||| | ||||||
Sbjct 707 ATAATCAAAAACCGAGGCATTGCCTCAGAGGCAT-CATACCCTTACCAAGCGGCAGAGGG 765
Query 669 CCCATGCCGGTCCAACGATATACCCGCC--ATAGTAATCAGAGGGTTCGAAAACGTTCCA 726
||||||||| ||| | | |||| || || | | ||||||||||| | | |||||||
Sbjct 766 GACATGCCGGTACAATGGGAAACCCTCCGCATGG-A-TCAGAGGGTTCCAGACCGTTCCA 823
Query 727 AGCAACAACGAACGTGCGTTACTCGAAGCCGTATC-AAGACAACCTGTCGCAGTGGACAT 785
||||||||||| ||||| || ||||| || ||||| ||| || |||||| ||||| |||
Sbjct 824 AGCAACAACGAGCGTGCATTGCTCGAGGCTGTATCCAAG-CAGCCTGTCTCAGTGTCCAT 882
Query 786 TGACGCG-AGTGAGACTGGTTTTATTCATTACTCAGGGGGAGTGTACAATGCGCGGGACT 844
||||||| | || | | ||||| || ||||||||||||||||||||| ||| || | |||
Sbjct 883 TGACGCGGA-TGGGCCCGGTTTCATGCATTACTCAGGGGGAGTGTACGATGAGCCGTACT 941
Query 845 GTGGGACTAGCGTGAATCATGCAGTGACATTCGTTGGGTACGGTACGAGCC-AGGAAGGT 903
||||||| | |||||| ||||||||||| |||||||| ||||| ||||||| || | ||
Sbjct 942 GTGGGACCAACGTGAACCATGCAGTGACGTTCGTTGGATACGGAACGAGCCCAG-AGGGG 1000
Query 904 ATCAAGTACTGGTTGGCTAAGAACTCTTGGGGTAAGACTTGGGGAGAGAATGGTTACATT 963
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1001 ATCAAGTACTGGCTGGCTAAGAACTCGTGGGGTGAGACTTGGGGAGAGAATGGTTACATT 1060
Query 964 AGGATTCGTAGAGATGTGG-AGTGGCCTCAAGGCATGTGTGGTGTAGCTCAGTATGCTTC 1022
||||| ||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 1061 AGGATCCGTAGAGATGTGGCA-TGGCCTCAAGGCATGTGTGGTGTGGCTCAGTATGCTTT 1119
Query 1023 TTATCCGGTTGCGTAA 1038
|||||||||||| |||
Sbjct 1120 TTATCCGGTTGCCTAA 1135
> AT1G29110.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:10171683-10173071 FORWARD LENGTH=1005
Length=1005
Score = 353 bits (191), Expect = 2e-96
Identities = 364/445 (82%), Gaps = 21/445 (5%)
Strand=Plus/Plus
Query 18 TGTGTTAGTTGTTTTAACCATTTTTTCCATGGATCTAAAGATCTC-CGAAGCCACATCTC 76
|||||| || | | |||||||| ||||||||||||||| |||||| | |||||| | |||
Sbjct 18 TGTGTTCGTGGCTCTAACCATTCTTTCCATGGATCTAAGGATCTCTC-AAGCCAGACCTC 76
Query 77 GTGTCGCTTTGCACGAGCCAA-CCATTTTTTATTACCACCAGA-AATGGATGA-TAAATT 133
|||| ||||| ||||| ||| | ||| || |||||||||| | ||||||||| | || |
Sbjct 77 ATGTCACTTTGAACGAG-CAATCAATTGTTGATTACCACCA-ACAATGGATGACTCAA-T 133
Query 134 TTTCTCGAGTTTATGATGATGAATTTGAGAAACAGATGAGGCTTGAAGTGTTCACGGAAA 193
| ||||||||||| | ||||||| |||||| | ||||||||| ||||||||| | |||
Sbjct 134 TCTCTCGAGTTTACAAGGATGAATCCGAGAAAGAAATGAGGCTTAAAGTGTTCAAGAAAA 193
Query 194 ATTTGAAGTTCATTGAGAACTTCAATAATATGGGGAGTCAAAGCTACAAACTTGGTGTCA 253
| ||||| |||||||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct 194 ACTTGAAATTCATTGAGAACTTCAATAATATGGGGAACCAAAGCTATACACTTGGTGTCA 253
Query 254 ACAAGTTCACGGATTGGACTAA-AGAGGAGTTCCTTGCCACCCACACCGGTCTCAGTGGC 312
|| ||||||||||||||| || ||| ||||||||||| ||||||||||| ||| | |
Sbjct 254 ACGAGTTCACGGATTGGAA-AACAGAAGAGTTCCTTGCGACCCACACCGGCCTCCGCG-- 310
Query 313 ATTAATGTAACTTCACCTTTC-GAAGTGGTTAATGAAACGACGCCAGCTTGGAATTGGAC 371
|||| |||||||||| | || ||| | ||||| |||||| |||| | |||||||||
Sbjct 311 -TTAACGTAACTTCAC-TATCCGAACTATTTAATAAAACGAAGCCATCAAGGAATTGGAA 368
Query 372 CGTCAGTGATGTC--CTTGGCA--CGAC--CAAAGATTGGAGAAACGAAGGAGCTGTAAC 425
| | |||||| || | ||| | ||| |||||| |||||| ||||||||||||||||
Sbjct 369 CATGAGTGATATCGACATGGAAGACGAAAGCAAAGACTGGAGAGACGAAGGAGCTGTAAC 428
Query 426 ACCTGTTAAATACCAAGGAGAATGT 450
|||||||||||| ||||||| ||||
Sbjct 429 ACCTGTTAAATATCAAGGAGCATGT 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5